RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 LYPD5Q6UWN5 251 aa10.18□□□□□ -0.78
CLN3-213ENST00000565047 C5orf17Q8NAS9 161 aa10.18□□□□□ -0.78
CLN3-213ENST00000565047 SGK494Q96LW2 274 aa10.18□□□□□ -0.78
CLN3-213ENST00000565047 TREM1Q9NP99 234 aa10.18□□□□□ -0.78
CLN3-213ENST00000565047 C11orf21Q9P2W6 132 aa10.18□□□□□ -0.78
CLN3-213ENST00000565047 SERTM2A0A1B0GWG4 89 aa10.17□□□□□ -0.78
CLN3-213ENST00000565047 TYMSP04818 313 aa10.17□□□□□ -0.78
CLN3-213ENST00000565047 SFTA3P0C7M3 94 aa10.17□□□□□ -0.78
CLN3-213ENST00000565047 TTC32Q5I0X7 151 aa10.17□□□□□ -0.78
CLN3-213ENST00000565047 Q6ZRN7 208 aaPredicted RBP10.17□□□□□ -0.78
CLN3-213ENST00000565047 C8orf49Q96NF6 230 aa10.17□□□□□ -0.78
CLN3-213ENST00000565047 ICOSQ9Y6W8 199 aa10.17□□□□□ -0.78
CLN3-213ENST00000565047 CXorf1O96002 111 aa10.16□□□□□ -0.78
CLN3-213ENST00000565047 CYTL1Q9NRR1 136 aa10.16□□□□□ -0.78
CLN3-213ENST00000565047 EPDR1Q9UM22 224 aa10.16□□□□□ -0.78
CLN3-213ENST00000565047 K7EQD1 137 aa10.15□□□□□ -0.78
CLN3-213ENST00000565047 M0R2P5 195 aa10.15□□□□□ -0.78
CLN3-213ENST00000565047 SUMO1P63165 101 aaKnown RBP10.15□□□□□ -0.78
CLN3-213ENST00000565047 MRPL23Q16540 153 aaKnown RBP10.15□□□□□ -0.78
CLN3-213ENST00000565047 INO80EQ8NBZ0 244 aaPredicted RBP10.15□□□□□ -0.78
CLN3-213ENST00000565047 OR2T35Q8NGX2 323 aa10.15□□□□□ -0.78
CLN3-213ENST00000565047 ACTR3CQ9C0K3 210 aaPredicted RBP10.15□□□□□ -0.78
CLN3-213ENST00000565047 TMEM167BQ9NRX6 74 aa10.15□□□□□ -0.78
CLN3-213ENST00000565047 NAGKQ9UJ70 344 aa10.15□□□□□ -0.78
CLN3-213ENST00000565047 PSG8Q9UQ74 426 aa10.15□□□□□ -0.78
CLN3-213ENST00000565047 TRAV4A0A0B4J268 109 aa10.14□□□□□ -0.79
CLN3-213ENST00000565047 A0A1W2PRE2 83 aa10.14□□□□□ -0.79
CLN3-213ENST00000565047 SIVA1O15304 175 aa10.14□□□□□ -0.79
CLN3-213ENST00000565047 FXYD6-FXYD2A0A087WZ82 144 aa10.13□□□□□ -0.79
CLN3-213ENST00000565047 TRGV4A0A0C4DH28 118 aa10.13□□□□□ -0.79
CLN3-213ENST00000565047 NXPH4O95158 308 aa10.13□□□□□ -0.79
CLN3-213ENST00000565047 LINC00315P59091 139 aa10.13□□□□□ -0.79
CLN3-213ENST00000565047 RGS21Q2M5E4 152 aa10.13□□□□□ -0.79
CLN3-213ENST00000565047 DPPA3Q6W0C5 159 aa10.13□□□□□ -0.79
CLN3-213ENST00000565047 NEGR1Q7Z3B1 354 aa10.13□□□□□ -0.79
CLN3-213ENST00000565047 TMEM75Q8N9X5 138 aa10.13□□□□□ -0.79
CLN3-213ENST00000565047 KCNS1Q96KK3 526 aa10.13□□□□□ -0.79
CLN3-213ENST00000565047 LINC00479Q96M42 142 aa10.13□□□□□ -0.79
CLN3-213ENST00000565047 SDF2L1Q9HCN8 221 aa10.13□□□□□ -0.79
CLN3-213ENST00000565047 PFN1P07737 140 aaKnown RBP10.12□□□□□ -0.79
CLN3-213ENST00000565047 FLI1Q01543 452 aaPredicted RBP10.12□□□□□ -0.79
CLN3-213ENST00000565047 CYB561D1Q8N8Q1 229 aa10.12□□□□□ -0.79
CLN3-213ENST00000565047 C9orf85Q96MD7 179 aa10.12□□□□□ -0.79
CLN3-213ENST00000565047 BORCS7-ASMTA0A0B4J1R7 106 aa10.11□□□□□ -0.79
CLN3-213ENST00000565047 CTXND1A0A1B0GTU2 59 aa10.11□□□□□ -0.79
CLN3-213ENST00000565047 C16orf90A8MZG2 172 aa10.11□□□□□ -0.79
CLN3-213ENST00000565047 TAAR5O14804 337 aa10.11□□□□□ -0.79
CLN3-213ENST00000565047 GCGP01275 180 aa10.11□□□□□ -0.79
CLN3-213ENST00000565047 ORM1P02763 201 aa10.11□□□□□ -0.79
CLN3-213ENST00000565047 RNASE3P12724 160 aaKnown RBP10.11□□□□□ -0.79
CLN3-213ENST00000565047 GYPEP15421 78 aa10.11□□□□□ -0.79
CLN3-213ENST00000565047 GATA1P15976 413 aaPredicted RBP10.11□□□□□ -0.79
CLN3-213ENST00000565047 KRTAP10-2P60368 255 aa10.11□□□□□ -0.79
CLN3-213ENST00000565047 OR4C5Q8NGB2 326 aa10.11□□□□□ -0.79
CLN3-213ENST00000565047 PTH2Q96A98 100 aa10.11□□□□□ -0.79
CLN3-213ENST00000565047 KRTAP4-5Q9BYR2 181 aa10.11□□□□□ -0.79
CLN3-213ENST00000565047 TNFRSF18Q9Y5U5 241 aa10.11□□□□□ -0.79
CLN3-213ENST00000565047 IGKV3D-20A0A0C4DH25 116 aa10.1□□□□□ -0.79
CLN3-213ENST00000565047 LOC100131303A0A0U1RQF7 123 aa10.1□□□□□ -0.79
CLN3-213ENST00000565047 FBLL1A6NHQ2 334 aaKnown RBP10.1□□□□□ -0.79
CLN3-213ENST00000565047 FAM74A7A6NL05 159 aa10.1□□□□□ -0.79
CLN3-213ENST00000565047 RS1O15537 224 aa10.1□□□□□ -0.79
CLN3-213ENST00000565047 CDK2AP2O75956 126 aa10.1□□□□□ -0.79
CLN3-213ENST00000565047 SMUG1Q53HV7 270 aa10.1□□□□□ -0.79
CLN3-213ENST00000565047 SPATA12Q7Z6I5 190 aa10.1□□□□□ -0.79
CLN3-213ENST00000565047 PRNTQ86SH4 94 aa10.1□□□□□ -0.79
CLN3-213ENST00000565047 NDFIP1Q9BT67 221 aa10.1□□□□□ -0.79
CLN3-213ENST00000565047 TRAV34A0A0B4J273 112 aa10.09□□□□□ -0.79
CLN3-213ENST00000565047 PGPEP1LA6NFU8 196 aa10.09□□□□□ -0.79
CLN3-213ENST00000565047 K7EQM0 130 aa10.09□□□□□ -0.79
CLN3-213ENST00000565047 SRIP30626 198 aa10.09□□□□□ -0.79
CLN3-213ENST00000565047 SAPCD1Q5SSQ6 148 aa10.09□□□□□ -0.79
CLN3-213ENST00000565047 CFAP126Q5VTH2 177 aa10.09□□□□□ -0.79
CLN3-213ENST00000565047 COX8CQ7Z4L0 72 aa10.09□□□□□ -0.79
CLN3-213ENST00000565047 WFDC10BQ8IUB3 73 aa10.09□□□□□ -0.79
CLN3-213ENST00000565047 C9JCJ5 164 aa10.08□□□□□ -0.8
CLN3-213ENST00000565047 SMLR1H3BR10 107 aa10.08□□□□□ -0.8
CLN3-213ENST00000565047 ARPC5O15511 151 aa10.08□□□□□ -0.8
CLN3-213ENST00000565047 DNAH10OSP0CZ25 163 aa10.08□□□□□ -0.8
CLN3-213ENST00000565047 CRIP1P50238 77 aa10.08□□□□□ -0.8
CLN3-213ENST00000565047 FGF8P55075 233 aaPredicted RBP10.08□□□□□ -0.8
CLN3-213ENST00000565047 TIRAPP58753 221 aa10.08□□□□□ -0.8
CLN3-213ENST00000565047 ZNF876PQ49A33 203 aa10.08□□□□□ -0.8
CLN3-213ENST00000565047 ARL2-SNX15V9GYD0 113 aa10.08□□□□□ -0.8
CLN3-213ENST00000565047 UBE2G2P60604 165 aa10.07□□□□□ -0.8
CLN3-213ENST00000565047 SLC25A29Q8N8R3 303 aa10.07□□□□□ -0.8
CLN3-213ENST00000565047 OR11H4Q8NGC9 324 aa10.07□□□□□ -0.8
CLN3-213ENST00000565047 FAT1Q14517 4588 aa10.06□□□□□ -0.8
CLN3-213ENST00000565047 DNAH8Q96JB1 4490 aa10.06□□□□□ -0.8
CLN3-213ENST00000565047 TRBV6-4A0A1B0GX49 114 aa10.06□□□□□ -0.8
CLN3-213ENST00000565047 PEX7O00628 323 aa10.06□□□□□ -0.8
CLN3-213ENST00000565047 CIDEAO60543 219 aa10.06□□□□□ -0.8
CLN3-213ENST00000565047 FHITP49789 147 aa10.06□□□□□ -0.8
CLN3-213ENST00000565047 ZNF506Q5JVG8 444 aa10.06□□□□□ -0.8
CLN3-213ENST00000565047 AKR1C8PQ5T2L2 129 aa10.06□□□□□ -0.8
CLN3-213ENST00000565047 Q86TA4 180 aa10.06□□□□□ -0.8
CLN3-213ENST00000565047 KCNRGQ8N5I3 272 aa10.06□□□□□ -0.8
CLN3-213ENST00000565047 HIST1H2BAQ96A08 127 aa10.06□□□□□ -0.8
CLN3-213ENST00000565047 TXNDC17Q9BRA2 123 aa10.06□□□□□ -0.8
CLN3-213ENST00000565047 NKX6-2Q9C056 277 aaPredicted RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 124.4 ms