RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TREM1Q9NP99 234 aa11.7□□□□□ -0.54
VPS9D1-203ENST00000563798 LY96Q9Y6Y9 160 aa11.7□□□□□ -0.54
VPS9D1-203ENST00000563798 TRAV8-1A0A0A6YYK1 113 aa11.69□□□□□ -0.54
VPS9D1-203ENST00000563798 C9JCJ5 164 aa11.69□□□□□ -0.54
VPS9D1-203ENST00000563798 TYMSP04818 313 aa11.69□□□□□ -0.54
VPS9D1-203ENST00000563798 DNAH10OSP0CZ25 163 aa11.69□□□□□ -0.54
VPS9D1-203ENST00000563798 TIRAPP58753 221 aa11.69□□□□□ -0.54
VPS9D1-203ENST00000563798 OR4C5Q8NGB2 326 aa11.69□□□□□ -0.54
VPS9D1-203ENST00000563798 PCNPQ8WW12 178 aaKnown RBP11.69□□□□□ -0.54
VPS9D1-203ENST00000563798 AQP10Q96PS8 301 aa11.69□□□□□ -0.54
VPS9D1-203ENST00000563798 TXNDC17Q9BRA2 123 aa11.69□□□□□ -0.54
VPS9D1-203ENST00000563798 NAGKQ9UJ70 344 aa11.69□□□□□ -0.54
VPS9D1-203ENST00000563798 ALG5Q9Y673 324 aa11.69□□□□□ -0.54
VPS9D1-203ENST00000563798 ARL14EPLP0DKL9 152 aa11.68□□□□□ -0.54
VPS9D1-203ENST00000563798 CDC34P49427 236 aaPredicted RBP11.68□□□□□ -0.54
VPS9D1-203ENST00000563798 ERVFC1-1P60608 527 aa11.68□□□□□ -0.54
VPS9D1-203ENST00000563798 CDPF1Q6NVV7 123 aa11.68□□□□□ -0.54
VPS9D1-203ENST00000563798 SH2D6Q7Z4S9 175 aa11.68□□□□□ -0.54
VPS9D1-203ENST00000563798 C5orf17Q8NAS9 161 aa11.68□□□□□ -0.54
VPS9D1-203ENST00000563798 SDF2L1Q9HCN8 221 aa11.68□□□□□ -0.54
VPS9D1-203ENST00000563798 RPH3ALQ9UNE2 315 aa11.68□□□□□ -0.54
VPS9D1-203ENST00000563798 F6UZH7 168 aa11.67□□□□□ -0.54
VPS9D1-203ENST00000563798 EREGO14944 169 aa11.67□□□□□ -0.54
VPS9D1-203ENST00000563798 CIDEAO60543 219 aa11.67□□□□□ -0.54
VPS9D1-203ENST00000563798 TCRAP04437 139 aa11.67□□□□□ -0.54
VPS9D1-203ENST00000563798 GNG5P63218 68 aa11.67□□□□□ -0.54
VPS9D1-203ENST00000563798 SERF2P84101 59 aa11.67□□□□□ -0.54
VPS9D1-203ENST00000563798 WFDC10BQ8IUB3 73 aa11.67□□□□□ -0.54
VPS9D1-203ENST00000563798 RAB24Q969Q5 203 aa11.67□□□□□ -0.54
VPS9D1-203ENST00000563798 TNFRSF18Q9Y5U5 241 aa11.67□□□□□ -0.54
VPS9D1-203ENST00000563798 HMGB3O15347 200 aaKnown RBP11.66□□□□□ -0.54
VPS9D1-203ENST00000563798 MBP02144 154 aa11.66□□□□□ -0.54
VPS9D1-203ENST00000563798 GATA1P15976 413 aaPredicted RBP11.66□□□□□ -0.54
VPS9D1-203ENST00000563798 EVI2AP22794 236 aa11.66□□□□□ -0.54
VPS9D1-203ENST00000563798 ASB13Q8WXK3 278 aa11.66□□□□□ -0.54
VPS9D1-203ENST00000563798 PTH2Q96A98 100 aa11.66□□□□□ -0.54
VPS9D1-203ENST00000563798 NDFIP1Q9BT67 221 aa11.66□□□□□ -0.54
VPS9D1-203ENST00000563798 BATF3Q9NR55 127 aa11.66□□□□□ -0.54
VPS9D1-203ENST00000563798 MSRB1Q9NZV6 116 aa11.66□□□□□ -0.54
VPS9D1-203ENST00000563798 IGLV2-11P01706 119 aa11.65□□□□□ -0.54
VPS9D1-203ENST00000563798 ATP6V0CP27449 155 aa11.65□□□□□ -0.54
VPS9D1-203ENST00000563798 GCHFRP30047 84 aa11.65□□□□□ -0.54
VPS9D1-203ENST00000563798 HSD17B11Q8NBQ5 300 aa11.65□□□□□ -0.54
VPS9D1-203ENST00000563798 SCRT2Q9NQ03 307 aa11.65□□□□□ -0.54
VPS9D1-203ENST00000563798 A0A087WTM6 91 aa11.64□□□□□ -0.55
VPS9D1-203ENST00000563798 FBLL1A6NHQ2 334 aaKnown RBP11.64□□□□□ -0.55
VPS9D1-203ENST00000563798 K7EQM0 130 aa11.64□□□□□ -0.55
VPS9D1-203ENST00000563798 TAAR5O14804 337 aa11.64□□□□□ -0.55
VPS9D1-203ENST00000563798 PTTG1O95997 202 aa11.64□□□□□ -0.55
VPS9D1-203ENST00000563798 ZNF80P51504 273 aaPredicted RBP11.64□□□□□ -0.55
VPS9D1-203ENST00000563798 C10orf126Q8N4M7 172 aa11.64□□□□□ -0.55
VPS9D1-203ENST00000563798 TMEM167BQ9NRX6 74 aa11.64□□□□□ -0.55
VPS9D1-203ENST00000563798 C11orf21Q9P2W6 132 aa11.64□□□□□ -0.55
VPS9D1-203ENST00000563798 TNFSF18Q9UNG2 199 aa11.64□□□□□ -0.55
VPS9D1-203ENST00000563798 PSG8Q9UQ74 426 aa11.64□□□□□ -0.55
VPS9D1-203ENST00000563798 LOC100131303A0A0U1RQF7 123 aa11.63□□□□□ -0.55
VPS9D1-203ENST00000563798 RS1O15537 224 aa11.63□□□□□ -0.55
VPS9D1-203ENST00000563798 PFN1P07737 140 aaKnown RBP11.63□□□□□ -0.55
VPS9D1-203ENST00000563798 C9orf85Q96MD7 179 aa11.63□□□□□ -0.55
VPS9D1-203ENST00000563798 MED28Q9H204 178 aa11.63□□□□□ -0.55
VPS9D1-203ENST00000563798 EPDR1Q9UM22 224 aa11.63□□□□□ -0.55
VPS9D1-203ENST00000563798 BOLA1Q9Y3E2 137 aa11.63□□□□□ -0.55
VPS9D1-203ENST00000563798 TRBV6-4A0A1B0GX49 114 aa11.62□□□□□ -0.55
VPS9D1-203ENST00000563798 GGTLC3B5MD39 225 aa11.62□□□□□ -0.55
VPS9D1-203ENST00000563798 CXorf1O96002 111 aa11.62□□□□□ -0.55
VPS9D1-203ENST00000563798 SUMO1P63165 101 aaKnown RBP11.62□□□□□ -0.55
VPS9D1-203ENST00000563798 FLI1Q01543 452 aaPredicted RBP11.62□□□□□ -0.55
VPS9D1-203ENST00000563798 ZNF876PQ49A33 203 aa11.62□□□□□ -0.55
VPS9D1-203ENST00000563798 CFAP126Q5VTH2 177 aa11.62□□□□□ -0.55
VPS9D1-203ENST00000563798 TMEM75Q8N9X5 138 aa11.62□□□□□ -0.55
VPS9D1-203ENST00000563798 SGK494Q96LW2 274 aa11.62□□□□□ -0.55
VPS9D1-203ENST00000563798 GCGP01275 180 aa11.61□□□□□ -0.55
VPS9D1-203ENST00000563798 CRYGDP07320 174 aa11.61□□□□□ -0.55
VPS9D1-203ENST00000563798 GIPP09681 153 aaPredicted RBP11.61□□□□□ -0.55
VPS9D1-203ENST00000563798 SMUG1Q53HV7 270 aa11.61□□□□□ -0.55
VPS9D1-203ENST00000563798 Q5BKY6 102 aa11.61□□□□□ -0.55
VPS9D1-203ENST00000563798 SAPCD1Q5SSQ6 148 aa11.61□□□□□ -0.55
VPS9D1-203ENST00000563798 CYB561D1Q8N8Q1 229 aa11.61□□□□□ -0.55
VPS9D1-203ENST00000563798 SLC25A29Q8N8R3 303 aa11.61□□□□□ -0.55
VPS9D1-203ENST00000563798 ACTR3CQ9C0K3 210 aaPredicted RBP11.61□□□□□ -0.55
VPS9D1-203ENST00000563798 IGHV3-38A0A0C4DH36 116 aa11.6□□□□□ -0.55
VPS9D1-203ENST00000563798 A0A1W2PRE2 83 aa11.6□□□□□ -0.55
VPS9D1-203ENST00000563798 LINC01556Q5JQF7 62 aa11.6□□□□□ -0.55
VPS9D1-203ENST00000563798 DPPA3Q6W0C5 159 aa11.6□□□□□ -0.55
VPS9D1-203ENST00000563798 SH3BGRL3Q9H299 93 aa11.6□□□□□ -0.55
VPS9D1-203ENST00000563798 RNASE3P12724 160 aaKnown RBP11.59□□□□□ -0.55
VPS9D1-203ENST00000563798 XGP55808 180 aa11.59□□□□□ -0.55
VPS9D1-203ENST00000563798 RHOHQ15669 191 aa11.59□□□□□ -0.55
VPS9D1-203ENST00000563798 ZFP69Q49AA0 526 aa11.59□□□□□ -0.55
VPS9D1-203ENST00000563798 PIK3CD-AS1Q5SR53 167 aa11.59□□□□□ -0.55
VPS9D1-203ENST00000563798 NHLRC2Q8NBF2 726 aa11.59□□□□□ -0.55
VPS9D1-203ENST00000563798 PRADC1Q9BSG0 188 aa11.59□□□□□ -0.55
VPS9D1-203ENST00000563798 RNF222A6NCQ9 220 aa11.58□□□□□ -0.56
VPS9D1-203ENST00000563798 IBA57-AS1B1ANH7 110 aa11.58□□□□□ -0.56
VPS9D1-203ENST00000563798 PPT1P50897 306 aa11.58□□□□□ -0.56
VPS9D1-203ENST00000563798 PRNTQ86SH4 94 aa11.58□□□□□ -0.56
VPS9D1-203ENST00000563798 PGPEP1LA6NFU8 196 aa11.57□□□□□ -0.56
VPS9D1-203ENST00000563798 MGST1P10620 155 aaKnown RBP11.57□□□□□ -0.56
VPS9D1-203ENST00000563798 FUSP35637 526 aaKnown RBP eCLIP11.57□□□□□ -0.56
VPS9D1-203ENST00000563798 ZNF506Q5JVG8 444 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 139.7 ms