RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CDC34P49427 236 aaPredicted RBP6.42□□□□□ -1.38
USP3-208ENST00000558285 FAM78BQ5VT40 261 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 MRPL54Q6P161 138 aaKnown RBP6.42□□□□□ -1.38
USP3-208ENST00000558285 EBLN2Q6P2I7 272 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 KCNS1Q96KK3 526 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 SLC39A9Q9NUM3 307 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 HIGD1AQ9Y241 93 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 TRAV9-2A0A087WT02 112 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 GAGE12BA1L429 117 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 ISLRO14498 428 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 NUPR1O60356 82 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 OR7C2O60412 319 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 CA1P00915 261 aaPredicted RBP6.42□□□□□ -1.38
USP3-208ENST00000558285 APOHP02749 345 aaPredicted RBP6.42□□□□□ -1.38
USP3-208ENST00000558285 ZNF688P0C7X2 276 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 ORM2P19652 201 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 LINC00310P59036 64 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 ZNF90Q03938 601 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 DEFB135Q30KP9 77 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 PSMG4Q5JS54 123 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 LCN15Q6UWW0 184 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 TMEM14EPQ6UXP3 125 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 GTF2H5Q6ZYL4 71 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 APRG1Q8IVJ8 170 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 RNF183Q96D59 192 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 GNB1LQ9BYB4 327 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 TP53TG3Q9ULZ0 132 aa6.42□□□□□ -1.38
USP3-208ENST00000558285 MPDU1O75352 247 aa6.41□□□□□ -1.38
USP3-208ENST00000558285 HINT1P49773 126 aaPredicted RBP6.41□□□□□ -1.38
USP3-208ENST00000558285 KRTDAPP60985 99 aa6.41□□□□□ -1.38
USP3-208ENST00000558285 ZNF726P1Q15940 193 aa6.41□□□□□ -1.38
USP3-208ENST00000558285 OR1L4Q8NGR5 311 aa6.41□□□□□ -1.38
USP3-208ENST00000558285 SSBP4Q9BWG4 385 aaPredicted RBP6.41□□□□□ -1.38
USP3-208ENST00000558285 EDA2RQ9HAV5 297 aa6.41□□□□□ -1.38
USP3-208ENST00000558285 ST20Q9HBF5 79 aa6.41□□□□□ -1.38
USP3-208ENST00000558285 CLEC5AQ9NY25 188 aa6.41□□□□□ -1.38
USP3-208ENST00000558285 LY96Q9Y6Y9 160 aa6.41□□□□□ -1.38
USP3-208ENST00000558285 PRKDCP78527 4128 aaKnown RBP6.41□□□□□ -1.38
USP3-208ENST00000558285 NUPR2A6NF83 97 aa6.4□□□□□ -1.38
USP3-208ENST00000558285 TAX1BP3O14907 124 aa6.4□□□□□ -1.38
USP3-208ENST00000558285 COX7A2P2O60397 106 aa6.4□□□□□ -1.38
USP3-208ENST00000558285 LINC00869P0C866 280 aa6.4□□□□□ -1.38
USP3-208ENST00000558285 SLC38A11Q08AI6 406 aa6.4□□□□□ -1.38
USP3-208ENST00000558285 FFAR4Q5NUL3 377 aa6.4□□□□□ -1.38
USP3-208ENST00000558285 FAM162BQ5T6X4 162 aa6.4□□□□□ -1.38
USP3-208ENST00000558285 DCANP1Q8TF63 244 aa6.4□□□□□ -1.38
USP3-208ENST00000558285 BORCS7Q96B45 105 aa6.4□□□□□ -1.38
USP3-208ENST00000558285 SFRP2Q96HF1 295 aa6.4□□□□□ -1.38
USP3-208ENST00000558285 OVOL2Q9BRP0 275 aa6.4□□□□□ -1.38
USP3-208ENST00000558285 RSG1Q9BU20 258 aa6.4□□□□□ -1.38
USP3-208ENST00000558285 MRPL18Q9H0U6 180 aaKnown RBP6.4□□□□□ -1.38
USP3-208ENST00000558285 SLC25A22Q9H936 323 aa6.4□□□□□ -1.38
USP3-208ENST00000558285 KLK5Q9Y337 293 aaPredicted RBP6.4□□□□□ -1.38
USP3-208ENST00000558285 IGKV1D-37A0A075B6S9 117 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 PRSS46E5RG02 174 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 ZNF324O75467 553 aaPredicted RBP6.39□□□□□ -1.39
USP3-208ENST00000558285 CST7O76096 145 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 DUSP14O95147 198 aaKnown RBP6.39□□□□□ -1.39
USP3-208ENST00000558285 CASC10Q5T4H9 136 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 FOXI2Q6ZQN5 318 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 UHRF2Q96PU4 802 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 PMCHL2Q9BQD1 86 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 WDR61Q9GZS3 305 aaKnown RBP6.39□□□□□ -1.39
USP3-208ENST00000558285 IL36BQ9NZH7 164 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 AMTP48728 403 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 PAX9P55771 341 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 PLP1P60201 277 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 TRPT1Q86TN4 253 aaKnown RBP6.39□□□□□ -1.39
USP3-208ENST00000558285 BPIFA4PQ86YQ2 179 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 FER1L6-AS1Q8NA97 138 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 OR11H2Q8NH07 326 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 SHANK2-AS3Q9BTD1 123 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 RETNQ9HD89 108 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 X6R8D5 127 aa6.39□□□□□ -1.39
USP3-208ENST00000558285 TEX48A0A1B0GUV7 120 aa6.38□□□□□ -1.39
USP3-208ENST00000558285 OR10J4P0C629 311 aa6.38□□□□□ -1.39
USP3-208ENST00000558285 STAG3L3P0CL85 134 aa6.38□□□□□ -1.39
USP3-208ENST00000558285 HLA-DRB4P13762 266 aa6.38□□□□□ -1.39
USP3-208ENST00000558285 MIFP14174 115 aa6.38□□□□□ -1.39
USP3-208ENST00000558285 SEC11AP67812 179 aa6.38□□□□□ -1.39
USP3-208ENST00000558285 OR5A1Q8NGJ0 315 aa6.38□□□□□ -1.39
USP3-208ENST00000558285 OR10G8Q8NGN5 311 aa6.38□□□□□ -1.39
USP3-208ENST00000558285 SLC25A39Q9BZJ4 359 aaPredicted RBP6.38□□□□□ -1.39
USP3-208ENST00000558285 C11orf68Q9H3H3 251 aaKnown RBP6.38□□□□□ -1.39
USP3-208ENST00000558285 RFNGQ9Y644 331 aa6.38□□□□□ -1.39
USP3-208ENST00000558285 HLA-DRB4X5D2U9 266 aa6.38□□□□□ -1.39
USP3-208ENST00000558285 GRIFINA4D1Z8 144 aa6.37□□□□□ -1.39
USP3-208ENST00000558285 TMEM189A5PLL7 270 aa6.37□□□□□ -1.39
USP3-208ENST00000558285 HLA-DQA1P01909 254 aa6.37□□□□□ -1.39
USP3-208ENST00000558285 C3orf79P0CE67 100 aa6.37□□□□□ -1.39
USP3-208ENST00000558285 C10orf113Q5VZT2 155 aa6.37□□□□□ -1.39
USP3-208ENST00000558285 RASL11AQ6T310 242 aa6.37□□□□□ -1.39
USP3-208ENST00000558285 SLC50A1Q9BRV3 221 aa6.37□□□□□ -1.39
USP3-208ENST00000558285 IGKV1OR2-108A0A075B7D4 117 aa6.36□□□□□ -1.39
USP3-208ENST00000558285 SMIM9A6NGZ8 99 aa6.36□□□□□ -1.39
USP3-208ENST00000558285 KNCNA6PVL3 124 aa6.36□□□□□ -1.39
USP3-208ENST00000558285 PMS2P5A8MQ11 134 aa6.36□□□□□ -1.39
USP3-208ENST00000558285 C11orf94C9JXX5 98 aa6.36□□□□□ -1.39
USP3-208ENST00000558285 H3BRN7 92 aa6.36□□□□□ -1.39
USP3-208ENST00000558285 BVES-AS1Q5T3Y7 98 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms