RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 COX19Q49B96 90 aa4.48□□□□□ -1.69
SYNE2-225ENST00000557060 OR10J3Q5JRS4 329 aa4.48□□□□□ -1.69
SYNE2-225ENST00000557060 FAM209BQ5JX69 171 aa4.48□□□□□ -1.69
SYNE2-225ENST00000557060 C9orf139Q6ZV77 190 aa4.48□□□□□ -1.69
SYNE2-225ENST00000557060 GFRA4Q9GZZ7 299 aa4.48□□□□□ -1.69
SYNE2-225ENST00000557060 U3KQE9 123 aa4.48□□□□□ -1.69
SYNE2-225ENST00000557060 A0A087X0K7 114 aa4.48□□□□□ -1.69
SYNE2-225ENST00000557060 C3orf79P0CE67 100 aa4.48□□□□□ -1.69
SYNE2-225ENST00000557060 SPINK13Q1W4C9 94 aa4.48□□□□□ -1.69
SYNE2-225ENST00000557060 TCTEX1D4Q5JR98 221 aa4.48□□□□□ -1.69
SYNE2-225ENST00000557060 LRRC75A-AS1Q8N1F1 130 aa4.48□□□□□ -1.69
SYNE2-225ENST00000557060 OR8A1Q8NGG7 326 aa4.48□□□□□ -1.69
SYNE2-225ENST00000557060 H3BUA1 57 aa4.47□□□□□ -1.69
SYNE2-225ENST00000557060 LINC00614P0C842 121 aa4.47□□□□□ -1.69
SYNE2-225ENST00000557060 PAFAH1B2P68402 229 aa4.47□□□□□ -1.69
SYNE2-225ENST00000557060 LGALS1P09382 135 aaKnown RBP4.47□□□□□ -1.69
SYNE2-225ENST00000557060 DEFA6Q01524 100 aa4.47□□□□□ -1.69
SYNE2-225ENST00000557060 BATFQ16520 125 aa4.47□□□□□ -1.69
SYNE2-225ENST00000557060 RASL11AQ6T310 242 aa4.47□□□□□ -1.69
SYNE2-225ENST00000557060 Q6ZSV7 163 aa4.47□□□□□ -1.69
SYNE2-225ENST00000557060 FA2HQ7L5A8 372 aa4.47□□□□□ -1.69
SYNE2-225ENST00000557060 URB1-AS1Q96HZ7 61 aa4.47□□□□□ -1.69
SYNE2-225ENST00000557060 PRELID3AQ96N28 172 aa4.47□□□□□ -1.69
SYNE2-225ENST00000557060 C18orf15Q96N68 181 aa4.47□□□□□ -1.69
SYNE2-225ENST00000557060 TP73-AS1Q9UF72 201 aa4.47□□□□□ -1.69
SYNE2-225ENST00000557060 AKAP9Q99996 3911 aa4.46□□□□□ -1.69
SYNE2-225ENST00000557060 KNCNA6PVL3 124 aa4.46□□□□□ -1.69
SYNE2-225ENST00000557060 FSHBP01225 129 aa4.46□□□□□ -1.69
SYNE2-225ENST00000557060 DDTP30046 118 aa4.46□□□□□ -1.69
SYNE2-225ENST00000557060 ANXA2RQ3ZCQ2 193 aa4.46□□□□□ -1.69
SYNE2-225ENST00000557060 MRPL51Q4U2R6 128 aaKnown RBP4.46□□□□□ -1.69
SYNE2-225ENST00000557060 EBLN2Q6P2I7 272 aa4.46□□□□□ -1.69
SYNE2-225ENST00000557060 ZNF705AQ6ZN79 300 aaPredicted RBP4.46□□□□□ -1.69
SYNE2-225ENST00000557060 KLK9Q9UKQ9 250 aa4.46□□□□□ -1.69
SYNE2-225ENST00000557060 IGHV1-24A0A0C4DH33 117 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 FAM231BA6NCW3 169 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 C2orf70A6NJV1 201 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 NPYP01303 97 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 MGPP08493 103 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 SNRPD3P62318 126 aaKnown RBP4.46□□□□□ -1.7
SYNE2-225ENST00000557060 FAM74A4Q5TZK3 123 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 REC114Q7Z4M0 266 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 ZNF575Q86XF7 245 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 APRG1Q8IVJ8 170 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 DLX4Q92988 240 aaPredicted RBP4.46□□□□□ -1.7
SYNE2-225ENST00000557060 VAMP8Q9BV40 100 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 AP5S1Q9NUS5 200 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 PHLDA3Q9Y5J5 127 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 TRBV6-1A0A0K0K1D8 114 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 SOCS3O14543 225 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 LEPROTL1O95214 131 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 CD7P09564 240 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 CD28P10747 220 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 PKIAP61925 76 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 C9orf47Q6ZRZ4 202 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 ORMDL3Q8N138 153 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 ZFAND2AQ8N6M9 145 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 C14orf178Q8N769 122 aaPredicted RBP4.46□□□□□ -1.7
SYNE2-225ENST00000557060 DYNLRB2Q8TF09 96 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 DCANP1Q8TF63 244 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 UBE2E2Q96LR5 201 aa4.46□□□□□ -1.7
SYNE2-225ENST00000557060 MAST4O15021 2626 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 IGHV3OR16-12A0A075B7B8 117 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 ELANEP08246 267 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 ID1P41134 155 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 DEFB131AP59861 70 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 NSUN5P1Q3KNT7 163 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 FAM104BQ5XKR9 115 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 Q6AWC8 147 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 TMEM61Q8N0U2 210 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 OR1N2Q8NGR9 330 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 C14orf144Q96I85 54 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 CITED2Q99967 270 aaPredicted RBP4.45□□□□□ -1.7
SYNE2-225ENST00000557060 A0A087WWL8 130 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 RBAKDNA6NC62 111 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 OVOL1O14753 267 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 KLK9Q2XQG4 91 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 SPATA12Q7Z6I5 190 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 LINC00477Q96M19 166 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 JPT2Q9H910 190 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 SIGLEC8Q9NYZ4 499 aa4.45□□□□□ -1.7
SYNE2-225ENST00000557060 F5H697 171 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 IGLC6P0CF74 106 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 RAB4AP20338 218 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 FAM159AQ6UWV7 190 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 TRAV21A0A0B4J279 112 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 LINC01619G3V211 115 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 RPS20P60866 119 aaKnown RBP4.44□□□□□ -1.7
SYNE2-225ENST00000557060 ADAMTSL5Q6ZMM2 481 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 SMIM15Q7Z3B0 74 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 NEGR1Q7Z3B1 354 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 hDV102S1A0JD36 115 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 TCAPO15273 167 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 SNAI2O43623 268 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 BTF3P20290 206 aaKnown RBP4.44□□□□□ -1.7
SYNE2-225ENST00000557060 CTRLP40313 264 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 ASIPP42127 132 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 KRTAP1-1Q07627 177 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 KLF5Q13887 457 aaPredicted RBP4.44□□□□□ -1.7
SYNE2-225ENST00000557060 SPATA45Q537H7 98 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms