RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 KCNIP4Q6PIL6 250 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 OR10G8Q8NGN5 311 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 HIST1H2BHQ93079 126 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 ODF3Q96PU9 254 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 HIST1H2BNQ99877 126 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 HIST1H2BMQ99879 126 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 IGKV2-40A0A087WW87 121 aaPredicted RBP10.23□□□□□ -0.77
SHMT2-217ENST00000555116 IGKV2D-40P01614 121 aaPredicted RBP10.23□□□□□ -0.77
SHMT2-217ENST00000555116 KIR3DS1Q14943 382 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 C9orf47Q6ZRZ4 202 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 FRZBQ92765 325 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 AGPAT4-IT1Q9H0P7 198 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 STARD9Q9P2P6 4700 aa10.22□□□□□ -0.77
SHMT2-217ENST00000555116 FAM3BP58499 235 aaPredicted RBP10.22□□□□□ -0.77
SHMT2-217ENST00000555116 FAM19A4Q96LR4 140 aa10.22□□□□□ -0.77
SHMT2-217ENST00000555116 LINC00477Q96M19 166 aa10.22□□□□□ -0.77
SHMT2-217ENST00000555116 OTORQ9NRC9 128 aa10.22□□□□□ -0.77
SHMT2-217ENST00000555116 PEX7O00628 323 aa10.21□□□□□ -0.77
SHMT2-217ENST00000555116 IGLV2-8P01709 118 aa10.21□□□□□ -0.77
SHMT2-217ENST00000555116 TYMSP04818 313 aa10.21□□□□□ -0.77
SHMT2-217ENST00000555116 TSPOP30536 169 aa10.21□□□□□ -0.77
SHMT2-217ENST00000555116 NANOS2P60321 138 aaKnown RBP10.21□□□□□ -0.77
SHMT2-217ENST00000555116 OR5I1Q13606 314 aa10.21□□□□□ -0.77
SHMT2-217ENST00000555116 C11orf45Q8TAV5 145 aa10.21□□□□□ -0.77
SHMT2-217ENST00000555116 VGLL1Q99990 258 aa10.21□□□□□ -0.77
SHMT2-217ENST00000555116 TENM2Q9NT68 2774 aa10.21□□□□□ -0.78
SHMT2-217ENST00000555116 TRGC1P0CF51 173 aa10.21□□□□□ -0.78
SHMT2-217ENST00000555116 LEPP41159 167 aa10.21□□□□□ -0.78
SHMT2-217ENST00000555116 TAS2R60P59551 318 aa10.21□□□□□ -0.78
SHMT2-217ENST00000555116 LINC00479Q96M42 142 aa10.21□□□□□ -0.78
SHMT2-217ENST00000555116 TMEM208Q9BTX3 173 aa10.21□□□□□ -0.78
SHMT2-217ENST00000555116 PGPA6NDG6 321 aa10.2□□□□□ -0.78
SHMT2-217ENST00000555116 DIRC3C9JPN6 131 aa10.2□□□□□ -0.78
SHMT2-217ENST00000555116 GCGP01275 180 aa10.2□□□□□ -0.78
SHMT2-217ENST00000555116 CSN1S1P47710 185 aa10.2□□□□□ -0.78
SHMT2-217ENST00000555116 GFI1BQ5VTD9 330 aa10.2□□□□□ -0.78
SHMT2-217ENST00000555116 CELA1Q9UNI1 258 aa10.2□□□□□ -0.78
SHMT2-217ENST00000555116 RBAKDNA6NC62 111 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 ZNF705GA8MUZ8 300 aaPredicted RBP10.19□□□□□ -0.78
SHMT2-217ENST00000555116 PRM2P04554 102 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 ERVFC1-1P60608 527 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 RRN3P1Q2M238 152 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 TMEM256Q8N2U0 113 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 BTF3L4Q96K17 158 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 C20orf144Q9BQM9 153 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 EPDR1Q9UM22 224 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 TMEM189A5PLL7 270 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 SLC25A5P05141 298 aaKnown RBP10.19□□□□□ -0.78
SHMT2-217ENST00000555116 CRISP2P16562 243 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 ARL6IP6Q8N6S5 226 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 LINC01587Q99440 93 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 OSTCQ9NRP0 149 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 IL36BQ9NZH7 164 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 ZNF492Q9P255 531 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 V9GYV3 84 aa10.19□□□□□ -0.78
SHMT2-217ENST00000555116 KLLNB2CW77 178 aa10.18□□□□□ -0.78
SHMT2-217ENST00000555116 J3KRW8 73 aa10.18□□□□□ -0.78
SHMT2-217ENST00000555116 GNG5P63218 68 aa10.18□□□□□ -0.78
SHMT2-217ENST00000555116 PYY3Q5JQD4 70 aa10.18□□□□□ -0.78
SHMT2-217ENST00000555116 TMEM78Q5T7P6 136 aa10.18□□□□□ -0.78
SHMT2-217ENST00000555116 ZFAND2AQ8N6M9 145 aa10.18□□□□□ -0.78
SHMT2-217ENST00000555116 KLF12Q9Y4X4 402 aa10.18□□□□□ -0.78
SHMT2-217ENST00000555116 TRAV34A0A0B4J273 112 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 AZU1P20160 251 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 ZNF138P52744 262 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 EMP1P54849 157 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 CEMP1Q6PRD7 247 aaPredicted RBP10.17□□□□□ -0.78
SHMT2-217ENST00000555116 C5orf17Q8NAS9 161 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 OR10D4PQ8NGN7 298 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 Q8TAT8 98 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 CMTM2Q8TAZ6 248 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 PHLDA1Q8WV24 401 aaPredicted RBP10.17□□□□□ -0.78
SHMT2-217ENST00000555116 RNASE7Q9H1E1 156 aaKnown RBP10.17□□□□□ -0.78
SHMT2-217ENST00000555116 TRAV9-1A0A075B6T8 112 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 TRAV12-3A0A0B4J271 114 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 NUPR2A6NF83 97 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 MGST1P10620 155 aaKnown RBP10.17□□□□□ -0.78
SHMT2-217ENST00000555116 TMEM183BQ1AE95 376 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 C12orf74Q32Q52 190 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 BAGE2Q86Y30 109 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 HIST3H2BBQ8N257 126 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 NHLRC2Q8NBF2 726 aa10.17□□□□□ -0.78
SHMT2-217ENST00000555116 TRBV7-9A0A0J9YWB2 115 aa10.16□□□□□ -0.78
SHMT2-217ENST00000555116 C7orf71A4D174 169 aa10.16□□□□□ -0.78
SHMT2-217ENST00000555116 PRR9Q5T870 116 aa10.16□□□□□ -0.78
SHMT2-217ENST00000555116 ATG101Q9BSB4 218 aa10.16□□□□□ -0.78
SHMT2-217ENST00000555116 DKK2Q9UBU2 259 aa10.16□□□□□ -0.78
SHMT2-217ENST00000555116 RPH3ALQ9UNE2 315 aa10.16□□□□□ -0.78
SHMT2-217ENST00000555116 PLAC8L1A1L4L8 177 aa10.15□□□□□ -0.78
SHMT2-217ENST00000555116 IBA57Q5T440 356 aaKnown RBP10.15□□□□□ -0.78
SHMT2-217ENST00000555116 FAM222AQ5U5X8 452 aa10.15□□□□□ -0.78
SHMT2-217ENST00000555116 GOLT1AQ6ZVE7 132 aa10.15□□□□□ -0.78
SHMT2-217ENST00000555116 IFITM10A6NMD0 228 aa10.15□□□□□ -0.79
SHMT2-217ENST00000555116 TSTD3H0UI37 97 aa10.15□□□□□ -0.79
SHMT2-217ENST00000555116 ZNF324O75467 553 aaPredicted RBP10.15□□□□□ -0.79
SHMT2-217ENST00000555116 TCRAP04437 139 aa10.15□□□□□ -0.79
SHMT2-217ENST00000555116 SPART-AS1P0CW21 52 aa10.15□□□□□ -0.79
SHMT2-217ENST00000555116 RNASE4P34096 147 aaKnown RBP10.15□□□□□ -0.79
SHMT2-217ENST00000555116 PKIAP61925 76 aa10.15□□□□□ -0.79
SHMT2-217ENST00000555116 UBE2G1P62253 170 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms