RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 FAM223BA6NKX1 122 aa13.18□□□□□ -0.3
SHOX-204ENST00000554971 FAM223AQ8IWN6 122 aa13.18□□□□□ -0.3
SHOX-204ENST00000554971 MAP1LC3CQ9BXW4 147 aa13.18□□□□□ -0.3
SHOX-204ENST00000554971 LYZL1Q6UWQ5 148 aa13.17□□□□□ -0.3
SHOX-204ENST00000554971 C4orf3Q8WVX3 66 aa13.17□□□□□ -0.3
SHOX-204ENST00000554971 DUX3Q96PT4 197 aa13.17□□□□□ -0.3
SHOX-204ENST00000554971 TMEM191AQ9H0A3 160 aa13.17□□□□□ -0.3
SHOX-204ENST00000554971 AP5S1Q9NUS5 200 aa13.17□□□□□ -0.3
SHOX-204ENST00000554971 IGKV2-40A0A087WW87 121 aaPredicted RBP13.17□□□□□ -0.3
SHOX-204ENST00000554971 FABP5P3A8MUU1 101 aa13.17□□□□□ -0.3
SHOX-204ENST00000554971 IGKV2D-40P01614 121 aaPredicted RBP13.17□□□□□ -0.3
SHOX-204ENST00000554971 ATP5G2Q06055 141 aa13.17□□□□□ -0.3
SHOX-204ENST00000554971 COL5A1-AS1Q5SY13 56 aa13.17□□□□□ -0.3
SHOX-204ENST00000554971 FAM104BQ5XKR9 115 aa13.17□□□□□ -0.3
SHOX-204ENST00000554971 SPATA12Q7Z6I5 190 aa13.17□□□□□ -0.3
SHOX-204ENST00000554971 METTL26Q96S19 204 aa13.17□□□□□ -0.3
SHOX-204ENST00000554971 ST20Q9HBF5 79 aa13.17□□□□□ -0.3
SHOX-204ENST00000554971 HNRNPA3P51991 378 aaKnown RBP13.16□□□□□ -0.3
SHOX-204ENST00000554971 Q6ZN92 141 aa13.16□□□□□ -0.3
SHOX-204ENST00000554971 RAX2Q96IS3 184 aa13.16□□□□□ -0.3
SHOX-204ENST00000554971 CCDC140Q96MF4 163 aa13.16□□□□□ -0.3
SHOX-204ENST00000554971 U3KQE9 123 aa13.16□□□□□ -0.3
SHOX-204ENST00000554971 TRBV12-3P01733 135 aa13.15□□□□□ -0.3
SHOX-204ENST00000554971 FA2HQ7L5A8 372 aa13.15□□□□□ -0.3
SHOX-204ENST00000554971 USMG5Q96IX5 58 aa13.15□□□□□ -0.3
SHOX-204ENST00000554971 ASCL2Q99929 193 aa13.15□□□□□ -0.3
SHOX-204ENST00000554971 CNFNQ9BYD5 112 aa13.15□□□□□ -0.3
SHOX-204ENST00000554971 PPP1R14DQ9NXH3 145 aa13.15□□□□□ -0.3
SHOX-204ENST00000554971 LGALS1P09382 135 aaKnown RBP13.15□□□□□ -0.3
SHOX-204ENST00000554971 IGLC6P0CF74 106 aa13.15□□□□□ -0.3
SHOX-204ENST00000554971 ORMDL3Q8N138 153 aa13.15□□□□□ -0.3
SHOX-204ENST00000554971 FER1L6-AS1Q8NA97 138 aa13.15□□□□□ -0.3
SHOX-204ENST00000554971 PRSS3P2Q8NHM4 247 aa13.15□□□□□ -0.3
SHOX-204ENST00000554971 A0A0G2JLM5 398 aa13.14□□□□□ -0.31
SHOX-204ENST00000554971 OR4C46A6NHA9 309 aa13.14□□□□□ -0.31
SHOX-204ENST00000554971 CLEC19AQ6UXS0 136 aa13.14□□□□□ -0.31
SHOX-204ENST00000554971 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.14□□□□□ -0.31
SHOX-204ENST00000554971 OR10AG1Q8NH19 301 aa13.14□□□□□ -0.31
SHOX-204ENST00000554971 VGLL1Q99990 258 aa13.14□□□□□ -0.31
SHOX-204ENST00000554971 FHL3Q13643 280 aa13.13□□□□□ -0.31
SHOX-204ENST00000554971 LINC01559Q495D7 138 aa13.13□□□□□ -0.31
SHOX-204ENST00000554971 TPPP3Q9BW30 176 aa13.13□□□□□ -0.31
SHOX-204ENST00000554971 LAMTOR2Q9Y2Q5 125 aa13.13□□□□□ -0.31
SHOX-204ENST00000554971 M0QZ24 198 aa13.13□□□□□ -0.31
SHOX-204ENST00000554971 PPBPP02775 128 aa13.13□□□□□ -0.31
SHOX-204ENST00000554971 TSPOP30536 169 aa13.13□□□□□ -0.31
SHOX-204ENST00000554971 HIST1H1AQ02539 215 aaPredicted RBP13.13□□□□□ -0.31
SHOX-204ENST00000554971 OR11H1Q8NG94 326 aa13.13□□□□□ -0.31
SHOX-204ENST00000554971 MS4A6AQ9H2W1 248 aa13.13□□□□□ -0.31
SHOX-204ENST00000554971 IGHV4OR15-8A0A075B7B6 117 aa13.12□□□□□ -0.31
SHOX-204ENST00000554971 A0A087WW49 117 aa13.12□□□□□ -0.31
SHOX-204ENST00000554971 HSBP1L1C9JCN9 74 aa13.12□□□□□ -0.31
SHOX-204ENST00000554971 IGLL1P15814 213 aa13.12□□□□□ -0.31
SHOX-204ENST00000554971 GAGE1Q13065 139 aa13.12□□□□□ -0.31
SHOX-204ENST00000554971 CCL24O00175 119 aa13.11□□□□□ -0.31
SHOX-204ENST00000554971 PRELID3AQ96N28 172 aa13.11□□□□□ -0.31
SHOX-204ENST00000554971 ZNF80P51504 273 aaPredicted RBP13.11□□□□□ -0.31
SHOX-204ENST00000554971 LINC01545Q5VT33 79 aa13.11□□□□□ -0.31
SHOX-204ENST00000554971 ATOH7Q8N100 152 aa13.11□□□□□ -0.31
SHOX-204ENST00000554971 LENEPQ9Y5L5 61 aa13.1□□□□□ -0.31
SHOX-204ENST00000554971 D6R8Y8 96 aa13.09□□□□□ -0.31
SHOX-204ENST00000554971 C9orf47Q6ZRZ4 202 aa13.09□□□□□ -0.31
SHOX-204ENST00000554971 OR1N2Q8NGR9 330 aa13.09□□□□□ -0.31
SHOX-204ENST00000554971 PEF1Q9UBV8 284 aaKnown RBP13.09□□□□□ -0.31
SHOX-204ENST00000554971 MEGF8Q7Z7M0 2845 aa13.09□□□□□ -0.31
SHOX-204ENST00000554971 TMSB15BA0A087X1C1 80 aa13.09□□□□□ -0.31
SHOX-204ENST00000554971 IGHV3-35A0A0C4DH35 117 aa13.09□□□□□ -0.31
SHOX-204ENST00000554971 TMEM213A2RRL7 107 aa13.09□□□□□ -0.31
SHOX-204ENST00000554971 ORM1P02763 201 aa13.09□□□□□ -0.31
SHOX-204ENST00000554971 CSN3P07498 182 aa13.09□□□□□ -0.31
SHOX-204ENST00000554971 ZNF138P52744 262 aa13.09□□□□□ -0.31
SHOX-204ENST00000554971 TWIST1Q15672 202 aa13.09□□□□□ -0.31
SHOX-204ENST00000554971 MRPL51Q4U2R6 128 aaKnown RBP13.09□□□□□ -0.31
SHOX-204ENST00000554971 PRR31Q5SQ13 230 aa13.09□□□□□ -0.31
SHOX-204ENST00000554971 TMEM78Q5T7P6 136 aa13.09□□□□□ -0.31
SHOX-204ENST00000554971 Q8TAT8 98 aa13.09□□□□□ -0.31
SHOX-204ENST00000554971 HLA-DMBP28068 263 aa13.08□□□□□ -0.32
SHOX-204ENST00000554971 SLURP1P55000 103 aa13.08□□□□□ -0.32
SHOX-204ENST00000554971 LINC00482Q8N8I6 264 aa13.08□□□□□ -0.32
SHOX-204ENST00000554971 SIGLEC8Q9NYZ4 499 aa13.08□□□□□ -0.32
SHOX-204ENST00000554971 NDUFA4O00483 81 aa13.07□□□□□ -0.32
SHOX-204ENST00000554971 MAJINQ3KP22 176 aa13.07□□□□□ -0.32
SHOX-204ENST00000554971 ZNF575Q86XF7 245 aa13.07□□□□□ -0.32
SHOX-204ENST00000554971 AMN1Q8IY45 258 aa13.07□□□□□ -0.32
SHOX-204ENST00000554971 DPF1Q92782 380 aa13.07□□□□□ -0.32
SHOX-204ENST00000554971 LINC01619G3V211 115 aa13.07□□□□□ -0.32
SHOX-204ENST00000554971 PF4P02776 101 aa13.07□□□□□ -0.32
SHOX-204ENST00000554971 HOXD3P31249 432 aaPredicted RBP13.07□□□□□ -0.32
SHOX-204ENST00000554971 CKS2P33552 79 aa13.07□□□□□ -0.32
SHOX-204ENST00000554971 IGFL4Q6B9Z1 124 aa13.07□□□□□ -0.32
SHOX-204ENST00000554971 LINC00173Q6ZV60 143 aa13.07□□□□□ -0.32
SHOX-204ENST00000554971 AGPAT4-IT1Q9H0P7 198 aa13.07□□□□□ -0.32
SHOX-204ENST00000554971 IGHV3OR16-8A0A075B7F1 116 aa13.06□□□□□ -0.32
SHOX-204ENST00000554971 TRAV8-2A0A0B4J237 113 aa13.06□□□□□ -0.32
SHOX-204ENST00000554971 LINC01546A6NGU7 62 aa13.06□□□□□ -0.32
SHOX-204ENST00000554971 ZNF25P17030 456 aaPredicted RBP13.06□□□□□ -0.32
SHOX-204ENST00000554971 IFI27P40305 119 aaPredicted RBP13.06□□□□□ -0.32
SHOX-204ENST00000554971 PMCHL2Q9BQD1 86 aa13.06□□□□□ -0.32
SHOX-204ENST00000554971 SORL1Q92673 2214 aa13.06□□□□□ -0.32
SHOX-204ENST00000554971 PRAC2D3DTV9 90 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms