RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 TMEM189A5PLL7 270 aa8.79□□□□□ -1
SHMT2-209ENST00000553949 FAM74A3Q4VXF1 159 aa8.79□□□□□ -1
SHMT2-209ENST00000553949 SOHLH1Q5JUK2 328 aa8.79□□□□□ -1
SHMT2-209ENST00000553949 UQCC3Q6UW78 93 aa8.79□□□□□ -1
SHMT2-209ENST00000553949 KCNS1Q96KK3 526 aa8.79□□□□□ -1
SHMT2-209ENST00000553949 EDA2RQ9HAV5 297 aa8.79□□□□□ -1
SHMT2-209ENST00000553949 SDF2L1Q9HCN8 221 aa8.79□□□□□ -1
SHMT2-209ENST00000553949 TRGV11A0A075B6L2 103 aa8.78□□□□□ -1
SHMT2-209ENST00000553949 IGKV3D-20A0A0C4DH25 116 aa8.78□□□□□ -1
SHMT2-209ENST00000553949 K7EN84 100 aa8.78□□□□□ -1
SHMT2-209ENST00000553949 GNRH2O43555 120 aa8.78□□□□□ -1
SHMT2-209ENST00000553949 ORM1P02763 201 aa8.78□□□□□ -1
SHMT2-209ENST00000553949 TYMSP04818 313 aa8.78□□□□□ -1
SHMT2-209ENST00000553949 SFTA3P0C7M3 94 aa8.78□□□□□ -1
SHMT2-209ENST00000553949 OR5I1Q13606 314 aa8.78□□□□□ -1
SHMT2-209ENST00000553949 C11orf72Q8NBR9 251 aa8.78□□□□□ -1
SHMT2-209ENST00000553949 BIN3Q9NQY0 253 aa8.78□□□□□ -1
SHMT2-209ENST00000553949 LY96Q9Y6Y9 160 aa8.78□□□□□ -1
SHMT2-209ENST00000553949 KRBOX1C9JBD0 128 aa8.77□□□□□ -1.01
SHMT2-209ENST00000553949 M0R036 132 aa8.77□□□□□ -1.01
SHMT2-209ENST00000553949 TMEM241Q24JQ0 296 aa8.77□□□□□ -1.01
SHMT2-209ENST00000553949 LINC01559Q495D7 138 aa8.77□□□□□ -1.01
SHMT2-209ENST00000553949 IBA57Q5T440 356 aaKnown RBP8.77□□□□□ -1.01
SHMT2-209ENST00000553949 LINC01551Q86U37 167 aa8.77□□□□□ -1.01
SHMT2-209ENST00000553949 DAZAP1Q96EP5 407 aaKnown RBP8.77□□□□□ -1.01
SHMT2-209ENST00000553949 GSN-AS1Q9NRJ2 163 aa8.77□□□□□ -1.01
SHMT2-209ENST00000553949 MDFICQ9P1T7 246 aa8.77□□□□□ -1.01
SHMT2-209ENST00000553949 IGHV3-16A0A0C4DH30 117 aa8.76□□□□□ -1.01
SHMT2-209ENST00000553949 C19orf71A6NCJ1 209 aa8.76□□□□□ -1.01
SHMT2-209ENST00000553949 SNURFLB1AK76 121 aa8.76□□□□□ -1.01
SHMT2-209ENST00000553949 B4DEV8 164 aa8.76□□□□□ -1.01
SHMT2-209ENST00000553949 TCL1AP56279 114 aa8.76□□□□□ -1.01
SHMT2-209ENST00000553949 ZNF415Q09FC8 603 aa8.76□□□□□ -1.01
SHMT2-209ENST00000553949 NOP10Q9NPE3 64 aaKnown RBP8.76□□□□□ -1.01
SHMT2-209ENST00000553949 DKK2Q9UBU2 259 aa8.76□□□□□ -1.01
SHMT2-209ENST00000553949 NAT8Q9UHE5 227 aa8.76□□□□□ -1.01
SHMT2-209ENST00000553949 CELA1Q9UNI1 258 aa8.76□□□□□ -1.01
SHMT2-209ENST00000553949 TIMM8BQ9Y5J9 83 aaPredicted RBP8.76□□□□□ -1.01
SHMT2-209ENST00000553949 TMSB15BA0A087X1C1 80 aa8.75□□□□□ -1.01
SHMT2-209ENST00000553949 P01737 135 aa8.75□□□□□ -1.01
SHMT2-209ENST00000553949 SPART-AS1P0CW21 52 aa8.75□□□□□ -1.01
SHMT2-209ENST00000553949 DAZ2Q13117 558 aaKnown RBP8.75□□□□□ -1.01
SHMT2-209ENST00000553949 FAM222AQ5U5X8 452 aa8.75□□□□□ -1.01
SHMT2-209ENST00000553949 IL17DQ8TAD2 202 aa8.75□□□□□ -1.01
SHMT2-209ENST00000553949 TMEM218A2RU14 115 aa8.74□□□□□ -1.01
SHMT2-209ENST00000553949 GRIFINA4D1Z8 144 aa8.74□□□□□ -1.01
SHMT2-209ENST00000553949 CXorf65A6NEN9 183 aa8.74□□□□□ -1.01
SHMT2-209ENST00000553949 LYRM9A8MSI8 78 aa8.74□□□□□ -1.01
SHMT2-209ENST00000553949 ASIPP42127 132 aa8.74□□□□□ -1.01
SHMT2-209ENST00000553949 RPL23P62829 140 aaKnown RBP8.74□□□□□ -1.01
SHMT2-209ENST00000553949 RPL19P84098 196 aaKnown RBP8.74□□□□□ -1.01
SHMT2-209ENST00000553949 ZNF575Q86XF7 245 aa8.74□□□□□ -1.01
SHMT2-209ENST00000553949 NUDT10Q8NFP7 164 aa8.74□□□□□ -1.01
SHMT2-209ENST00000553949 C11orf45Q8TAV5 145 aa8.74□□□□□ -1.01
SHMT2-209ENST00000553949 NUDT11Q96G61 164 aa8.74□□□□□ -1.01
SHMT2-209ENST00000553949 RNASE7Q9H1E1 156 aaKnown RBP8.74□□□□□ -1.01
SHMT2-209ENST00000553949 STAB2Q8WWQ8 2551 aa8.74□□□□□ -1.01
SHMT2-209ENST00000553949 TGP01266 2768 aa8.74□□□□□ -1.01
SHMT2-209ENST00000553949 TEX48A0A1B0GUV7 120 aa8.73□□□□□ -1.01
SHMT2-209ENST00000553949 RNASE3P12724 160 aaKnown RBP8.73□□□□□ -1.01
SHMT2-209ENST00000553949 S100A4P26447 101 aaKnown RBP8.73□□□□□ -1.01
SHMT2-209ENST00000553949 ERVFC1-1P60608 527 aa8.73□□□□□ -1.01
SHMT2-209ENST00000553949 ADIRFQ15847 76 aa8.73□□□□□ -1.01
SHMT2-209ENST00000553949 DNLZQ5SXM8 178 aa8.73□□□□□ -1.01
SHMT2-209ENST00000553949 FAM231DQ6ZW35 169 aa8.73□□□□□ -1.01
SHMT2-209ENST00000553949 OR2D3Q8NGH3 330 aa8.73□□□□□ -1.01
SHMT2-209ENST00000553949 SPXQ9BT56 116 aa8.73□□□□□ -1.01
SHMT2-209ENST00000553949 H3BVH4 76 aa8.72□□□□□ -1.01
SHMT2-209ENST00000553949 SPINK4O60575 86 aa8.72□□□□□ -1.01
SHMT2-209ENST00000553949 CXCL1P09341 107 aa8.72□□□□□ -1.01
SHMT2-209ENST00000553949 ADCYAP1P18509 176 aa8.72□□□□□ -1.01
SHMT2-209ENST00000553949 NANOS2P60321 138 aaKnown RBP8.72□□□□□ -1.01
SHMT2-209ENST00000553949 RPS20P60866 119 aaKnown RBP8.72□□□□□ -1.01
SHMT2-209ENST00000553949 C12orf74Q32Q52 190 aa8.72□□□□□ -1.01
SHMT2-209ENST00000553949 Q6ZTI0 123 aa8.72□□□□□ -1.01
SHMT2-209ENST00000553949 ISOC2Q96AB3 205 aa8.72□□□□□ -1.01
SHMT2-209ENST00000553949 C9orf85Q96MD7 179 aa8.72□□□□□ -1.01
SHMT2-209ENST00000553949 WWC2-AS2Q96NR7 200 aa8.72□□□□□ -1.01
SHMT2-209ENST00000553949 RPP21Q9H633 154 aaKnown RBP8.72□□□□□ -1.01
SHMT2-209ENST00000553949 IL36BQ9NZH7 164 aa8.72□□□□□ -1.01
SHMT2-209ENST00000553949 TRGV1A0A0A0MS02 117 aa8.71□□□□□ -1.02
SHMT2-209ENST00000553949 F8W036 122 aa8.71□□□□□ -1.02
SHMT2-209ENST00000553949 M0R2P5 195 aa8.71□□□□□ -1.02
SHMT2-209ENST00000553949 ARMS2P0C7Q2 107 aa8.71□□□□□ -1.02
SHMT2-209ENST00000553949 DEFB130BP0DP73 79 aa8.71□□□□□ -1.02
SHMT2-209ENST00000553949 DEFB130AP0DP74 79 aa8.71□□□□□ -1.02
SHMT2-209ENST00000553949 LGALS9BQ3B8N2 356 aa8.71□□□□□ -1.02
SHMT2-209ENST00000553949 LINC00612Q8N6U2 182 aa8.71□□□□□ -1.02
SHMT2-209ENST00000553949 OSTCQ9NRP0 149 aa8.71□□□□□ -1.02
SHMT2-209ENST00000553949 MRPL16Q9NX20 251 aaKnown RBP8.71□□□□□ -1.02
SHMT2-209ENST00000553949 GAGE12BA1L429 117 aa8.7□□□□□ -1.02
SHMT2-209ENST00000553949 XKRY2A2RUG3 117 aa8.7□□□□□ -1.02
SHMT2-209ENST00000553949 GATCO43716 136 aaKnown RBP8.7□□□□□ -1.02
SHMT2-209ENST00000553949 GAGE7O76087 117 aa8.7□□□□□ -1.02
SHMT2-209ENST00000553949 GAGE12FP0CL80 117 aa8.7□□□□□ -1.02
SHMT2-209ENST00000553949 GAGE12GP0CL81 117 aa8.7□□□□□ -1.02
SHMT2-209ENST00000553949 GAGE12IP0CL82 117 aa8.7□□□□□ -1.02
SHMT2-209ENST00000553949 MED14OSP0DP75 135 aa8.7□□□□□ -1.02
SHMT2-209ENST00000553949 GZMBP10144 247 aa8.7□□□□□ -1.02
SHMT2-209ENST00000553949 DAD1P61803 113 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 126.3 ms