RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 SSSCA1O60232 199 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 GGCTO75223 188 aaKnown RBP1.05□□□□□ -2.24
LIMA1-209ENST00000552008 ZNF737O75373 536 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 HYPMO75409 117 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 DEDDO75618 318 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 ADAP1O75689 374 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 IGKV1D-12P01611 117 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 C1QBP02746 253 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 ORM1P02763 201 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 CRYGDP07320 174 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 SAA2P0DJI9 122 aaPredicted RBP1.05□□□□□ -2.24
LIMA1-209ENST00000552008 OR13C7P0DN81 318 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 RPL7P18124 248 aaKnown RBP1.05□□□□□ -2.24
LIMA1-209ENST00000552008 ATP6V0CP27449 155 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 G0S2P27469 103 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 G6PCP35575 357 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 INSL3P51460 131 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 ZNF137PP52743 207 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 TPPP2P59282 170 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 B2MP61769 119 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 UBE2G1P62253 170 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 RHOBP62745 196 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 UBA52P62987 128 aaKnown RBP1.05□□□□□ -2.24
LIMA1-209ENST00000552008 QRFPP83859 136 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 PSG9Q00887 426 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 PRCDQ00LT1 54 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 SMAGPQ0VAQ4 97 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 PPP1R1AQ13522 171 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 COTL1Q14019 142 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 ZNF345Q14585 488 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 INSL4Q14641 139 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 FXYD3Q14802 87 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 KHDC3LQ587J8 217 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 CLLU1Q5K131 121 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 C1orf194Q5T5A4 169 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 SPATA31B1PQ5VZV4 182 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 UNQ5815/PRO19632Q6UWF5 114 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 ZNF833PQ6ZTB9 187 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 SCXQ7RTU7 201 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 BPIFA4PQ86YQ2 179 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 BOD1L2Q8IYS8 172 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 OR8I2Q8N0Y5 310 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 OR4C16Q8NGL9 310 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 OR10D4PQ8NGN7 298 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 OR5H6Q8NGV6 325 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 TMEM167AQ8TBQ9 72 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 DYNLRB2Q8TF09 96 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 PPP1R1CQ8WVI7 109 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 B9D2Q9BPU9 175 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 FXYD6Q9H0Q3 95 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 MANBALQ9NQG1 85 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 TMEM167BQ9NRX6 74 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 C19orf12Q9NSK7 152 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 RABAC1Q9UI14 185 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 TNFSF18Q9UNG2 199 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 LINC00588Q9Y4M8 146 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 LSM5Q9Y4Y9 91 aaKnown RBP1.05□□□□□ -2.24
LIMA1-209ENST00000552008 HSPB11Q9Y547 144 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 V9GYH0 126 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 PDE4DIPQ5VU43 2346 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 ZNF106Q9H2Y7 1883 aaKnown RBP1.05□□□□□ -2.24
LIMA1-209ENST00000552008 CHD5Q8TDI0 1954 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 PCDH15Q96QU1 1955 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 CEP290O15078 2479 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 CHD7Q9P2D1 2997 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 PCNX2A6NKB5 2137 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 RANBP2P49792 3224 aaKnown RBP1.04□□□□□ -2.24
LIMA1-209ENST00000552008 TECTAO75443 2155 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 OBSL1O75147 1896 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 TRAV14DV4A0A0A6YYC5 116 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 TEX50A0A1B0GTY4 177 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 CLPSL1A2RUU4 121 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 LINC00862A6NCI5 91 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 PPP5D1E7EU14 171 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 F8W036 122 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 LYNX1G3V0Z9 82 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 C3orf84H3BNL1 204 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 I3L521 148 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 PITX3O75364 302 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 NDUFS6O75380 124 aaKnown RBP1.04□□□□□ -2.24
LIMA1-209ENST00000552008 BRI3O95415 125 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 MPC2O95563 127 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 HLA-DRB1P01911 266 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 MT-ND4LP03901 98 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 OR5G3P0C626 314 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 SMIM17P0DL12 118 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 LYNX1P0DP58 116 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 CCL3L1P16619 93 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 FGF7P21781 194 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 OR10J1P30954 320 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 REG1BP48304 166 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 UBE2G2P60604 165 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 RPS20P60866 119 aaKnown RBP1.04□□□□□ -2.24
LIMA1-209ENST00000552008 YPEL3P61236 119 aaPredicted RBP1.04□□□□□ -2.24
LIMA1-209ENST00000552008 SLC38A11Q08AI6 406 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 RPL39P5Q59GN2 51 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 NMSQ5H8A3 153 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 PSMG4Q5JS54 123 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 SAPCD1Q5SSQ6 148 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 FAM201AQ5SY85 155 aa1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms