RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	TP53TG3	Q9ULZ0	132 aa		7.33	□□□□□ -1.24
CPSF7-221	ENST00000543545	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	7.33	□□□□□ -1.24
CPSF7-221	ENST00000543545	PRKDC	P78527	4128 aa	Known RBP	7.32	□□□□□ -1.24
CPSF7-221	ENST00000543545	TMEM189	A5PLL7	270 aa		7.32	□□□□□ -1.24
CPSF7-221	ENST00000543545	SNURFL	B1AK76	121 aa		7.32	□□□□□ -1.24
CPSF7-221	ENST00000543545		B4DEV8	164 aa		7.32	□□□□□ -1.24
CPSF7-221	ENST00000543545		P01737	135 aa		7.32	□□□□□ -1.24
CPSF7-221	ENST00000543545	S100A4	P26447	101 aa	Known RBP	7.32	□□□□□ -1.24
CPSF7-221	ENST00000543545	LCE2D	Q5TA82	110 aa	Predicted RBP	7.32	□□□□□ -1.24
CPSF7-221	ENST00000543545	ZNF493	Q6ZR52	646 aa		7.32	□□□□□ -1.24
CPSF7-221	ENST00000543545		Q8NAQ8	132 aa		7.32	□□□□□ -1.24
CPSF7-221	ENST00000543545	TMEM263	Q8WUH6	116 aa	Known RBP	7.32	□□□□□ -1.24
CPSF7-221	ENST00000543545	LINC00467	Q9BRT7	94 aa		7.32	□□□□□ -1.24
CPSF7-221	ENST00000543545	C11orf21	Q9P2W6	132 aa		7.32	□□□□□ -1.24
CPSF7-221	ENST00000543545	NAT8	Q9UHE5	227 aa		7.32	□□□□□ -1.24
CPSF7-221	ENST00000543545	LY96	Q9Y6Y9	160 aa		7.32	□□□□□ -1.24
CPSF7-221	ENST00000543545	IGKV3D-20	A0A0C4DH25	116 aa		7.31	□□□□□ -1.24
CPSF7-221	ENST00000543545	TMEM218	A2RU14	115 aa		7.31	□□□□□ -1.24
CPSF7-221	ENST00000543545	GRIFIN	A4D1Z8	144 aa		7.31	□□□□□ -1.24
CPSF7-221	ENST00000543545		F8W036	122 aa		7.31	□□□□□ -1.24
CPSF7-221	ENST00000543545	ERVFC1-1	P60608	527 aa		7.31	□□□□□ -1.24
CPSF7-221	ENST00000543545	ZNF415	Q09FC8	603 aa		7.31	□□□□□ -1.24
CPSF7-221	ENST00000543545	ADIRF	Q15847	76 aa		7.31	□□□□□ -1.24
CPSF7-221	ENST00000543545	NBEAL2	Q6ZNJ1	2754 aa		7.31	□□□□□ -1.24
CPSF7-221	ENST00000543545	OR2D3	Q8NGH3	330 aa		7.31	□□□□□ -1.24
CPSF7-221	ENST00000543545	NOP10	Q9NPE3	64 aa	Known RBP	7.31	□□□□□ -1.24
CPSF7-221	ENST00000543545	GSN-AS1	Q9NRJ2	163 aa		7.31	□□□□□ -1.24
CPSF7-221	ENST00000543545	MDFIC	Q9P1T7	246 aa		7.31	□□□□□ -1.24
CPSF7-221	ENST00000543545	HUWE1	Q7Z6Z7	4374 aa	Known RBP	7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545	CXorf65	A6NEN9	183 aa		7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545	KRBOX1	C9JBD0	128 aa		7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545		K7EN84	100 aa		7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545	TYMS	P04818	313 aa		7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545	SPART-AS1	P0CW21	52 aa		7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545	ASIP	P42127	132 aa		7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545	RPL19	P84098	196 aa	Known RBP	7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545	TDRG1	Q3Y452	100 aa		7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545	LINC01551	Q86U37	167 aa		7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545	NUDT10	Q8NFP7	164 aa		7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545	RNASE8	Q8TDE3	154 aa	Known RBP	7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545	NUDT11	Q96G61	164 aa		7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545	RNASE7	Q9H1E1	156 aa	Known RBP	7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545	C11orf68	Q9H3H3	251 aa	Known RBP	7.3	□□□□□ -1.24
CPSF7-221	ENST00000543545	IGHV3-16	A0A0C4DH30	117 aa		7.29	□□□□□ -1.24
CPSF7-221	ENST00000543545	XKRY2	A2RUG3	117 aa		7.29	□□□□□ -1.24
CPSF7-221	ENST00000543545	C19orf71	A6NCJ1	209 aa		7.29	□□□□□ -1.24
CPSF7-221	ENST00000543545	GATC	O43716	136 aa	Known RBP	7.29	□□□□□ -1.24
CPSF7-221	ENST00000543545	RPS20	P60866	119 aa	Known RBP	7.29	□□□□□ -1.24
CPSF7-221	ENST00000543545	RPL23	P62829	140 aa	Known RBP	7.29	□□□□□ -1.24
CPSF7-221	ENST00000543545	LINC01559	Q495D7	138 aa		7.29	□□□□□ -1.24
CPSF7-221	ENST00000543545	IBA57	Q5T440	356 aa	Known RBP	7.29	□□□□□ -1.24
CPSF7-221	ENST00000543545	FAM222A	Q5U5X8	452 aa		7.29	□□□□□ -1.24
CPSF7-221	ENST00000543545	C15orf54	Q8N8G6	183 aa		7.29	□□□□□ -1.24
CPSF7-221	ENST00000543545	C11orf45	Q8TAV5	145 aa		7.29	□□□□□ -1.24
CPSF7-221	ENST00000543545	TRGV1	A0A0A0MS02	117 aa		7.28	□□□□□ -1.24
CPSF7-221	ENST00000543545	DEFB130B	P0DP73	79 aa		7.28	□□□□□ -1.24
CPSF7-221	ENST00000543545	DEFB130A	P0DP74	79 aa		7.28	□□□□□ -1.24
CPSF7-221	ENST00000543545	TCL1A	P56279	114 aa		7.28	□□□□□ -1.24
CPSF7-221	ENST00000543545	C11orf72	Q8NBR9	251 aa		7.28	□□□□□ -1.24
CPSF7-221	ENST00000543545	SPX	Q9BT56	116 aa		7.28	□□□□□ -1.24
CPSF7-221	ENST00000543545	TPPP3	Q9BW30	176 aa		7.28	□□□□□ -1.24
CPSF7-221	ENST00000543545	RPP21	Q9H633	154 aa	Known RBP	7.28	□□□□□ -1.24
CPSF7-221	ENST00000543545	DKK2	Q9UBU2	259 aa		7.28	□□□□□ -1.24
CPSF7-221	ENST00000543545	TEX48	A0A1B0GUV7	120 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	GAGE12B	A1L429	117 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	PLAC8L1	A1L4L8	177 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	LYRM9	A8MSI8	78 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545		H3BVH4	76 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	GAGE7	O76087	117 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	ARMS2	P0C7Q2	107 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	GAGE12F	P0CL80	117 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	GAGE12G	P0CL81	117 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	GAGE12I	P0CL82	117 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	GZMB	P10144	247 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	NANOS2	P60321	138 aa	Known RBP	7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	DAD1	P61803	113 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	DAZ2	Q13117	558 aa	Known RBP	7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	NDUFA5	Q16718	116 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	FAM231D	Q6ZW35	169 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	SLC7A5P1	Q8MH63	180 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	OR10G8	Q8NGN5	311 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	ISOC2	Q96AB3	205 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	OSTC	Q9NRP0	149 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	MRPL16	Q9NX20	251 aa	Known RBP	7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	CELA1	Q9UNI1	258 aa		7.27	□□□□□ -1.25
CPSF7-221	ENST00000543545	TRGV2	A0A075B6R0	118 aa		7.26	□□□□□ -1.25
CPSF7-221	ENST00000543545		M0R2P5	195 aa		7.26	□□□□□ -1.25
CPSF7-221	ENST00000543545	SST	P61278	116 aa		7.26	□□□□□ -1.25
CPSF7-221	ENST00000543545	PNRC1	Q12796	327 aa	Predicted RBP	7.26	□□□□□ -1.25
CPSF7-221	ENST00000543545		Q6ZTI0	123 aa		7.26	□□□□□ -1.25
CPSF7-221	ENST00000543545	SFRP2	Q96HF1	295 aa		7.26	□□□□□ -1.25
CPSF7-221	ENST00000543545	SEC11C	Q9BY50	192 aa		7.26	□□□□□ -1.25
CPSF7-221	ENST00000543545	EDA2R	Q9HAV5	297 aa		7.26	□□□□□ -1.25
CPSF7-221	ENST00000543545	PHLDA3	Q9Y5J5	127 aa		7.26	□□□□□ -1.25
CPSF7-221	ENST00000543545	MUC21	A0A0G2JKD1	596 aa		7.25	□□□□□ -1.25
CPSF7-221	ENST00000543545	MUC21	A0A140T8X8	626 aa		7.25	□□□□□ -1.25
CPSF7-221	ENST00000543545		A8MWL6	223 aa		7.25	□□□□□ -1.25
CPSF7-221	ENST00000543545	SPINK4	O60575	86 aa		7.25	□□□□□ -1.25
CPSF7-221	ENST00000543545	RNASE3	P12724	160 aa	Known RBP	7.25	□□□□□ -1.25
CPSF7-221	ENST00000543545	HTN3	P15516	51 aa		7.25	□□□□□ -1.25

Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms