RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 Q6ZSN1 163 aa3.48□□□□□ -1.85
USH1C-210ENST00000534556 TMUB2Q71RG4 321 aa3.48□□□□□ -1.85
USH1C-210ENST00000534556 PRNTQ86SH4 94 aa3.48□□□□□ -1.85
USH1C-210ENST00000534556 C15orf53Q8NAA6 179 aa3.48□□□□□ -1.85
USH1C-210ENST00000534556 C5orf17Q8NAS9 161 aa3.48□□□□□ -1.85
USH1C-210ENST00000534556 GNPNAT1Q96EK6 184 aaPredicted RBP3.48□□□□□ -1.85
USH1C-210ENST00000534556 ACTR3CQ9C0K3 210 aaPredicted RBP3.48□□□□□ -1.85
USH1C-210ENST00000534556 TREM1Q9NP99 234 aa3.48□□□□□ -1.85
USH1C-210ENST00000534556 PSG8Q9UQ74 426 aa3.48□□□□□ -1.85
USH1C-210ENST00000534556 BORCS7-ASMTA0A0B4J1R7 106 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 IGKV3D-20A0A0C4DH25 116 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 NBDYA0A0U1RRE5 68 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 A0A1B0GV50 99 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 A0A1W2PRE2 83 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 MAP1LC3B2A6NCE7 125 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 PGPEP1LA6NFU8 196 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 BCL2L11O43521 198 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 GCGP01275 180 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 MBP02144 154 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 CRYBA4P53673 196 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 FLI1Q01543 452 aaPredicted RBP3.47□□□□□ -1.85
USH1C-210ENST00000534556 TNP2Q05952 138 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 ZNF415Q09FC8 603 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 ZNF345Q14585 488 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 UBE2DNLQ8IWF7 75 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 CYB561D1Q8N8Q1 229 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 ZNF680Q8NEM1 530 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 CMTM2Q8TAZ6 248 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 MBD3L1Q8WWY6 194 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 RASL10AQ92737 203 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 ZC2HC1AQ96GY0 325 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 C9orf85Q96MD7 179 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 ARPC5LQ9BPX5 153 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 MAP1LC3BQ9GZQ8 125 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 JPT2Q9H910 190 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 TMEM167BQ9NRX6 74 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 NAGKQ9UJ70 344 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 TNFRSF18Q9Y5U5 241 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 ARL2-SNX15V9GYD0 113 aa3.47□□□□□ -1.85
USH1C-210ENST00000534556 TRGV2A0A075B6R0 118 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 TRAV21A0A0B4J279 112 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 PRSS29PA6NIE9 313 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 H3BNG1 76 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 PEX7O00628 323 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 TAAR5O14804 337 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 PAGE4O60829 102 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 SEC11BP0C7V7 166 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 AKR1C8PQ5T2L2 129 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 FAM159AQ6UWV7 190 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 Q6ZRN7 208 aaPredicted RBP3.46□□□□□ -1.86
USH1C-210ENST00000534556 COX8CQ7Z4L0 72 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 Q86TA4 180 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 IQCF2Q8IXL9 164 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 FAM213BQ8TBF2 198 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 ATG101Q9BSB4 218 aa3.46□□□□□ -1.86
USH1C-210ENST00000534556 FAT1Q14517 4588 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 hCG_2014768A0A024R1R8 64 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 TRGV11A0A075B6L2 103 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 IGHV3-73A0A0B4J1V6 119 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 A0A0D9SG52 128 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 SCO2A0A1W2PP80 73 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 GRIFINA4D1Z8 144 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 KRBOX1C9JBD0 128 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 K7EQD1 137 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 RS1O15537 224 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 PAX4O43316 350 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 SH2D1AO60880 128 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 PFN1P07737 140 aaKnown RBP3.45□□□□□ -1.86
USH1C-210ENST00000534556 GATA1P15976 413 aaPredicted RBP3.45□□□□□ -1.86
USH1C-210ENST00000534556 FUSP35637 526 aaKnown RBP eCLIP3.45□□□□□ -1.86
USH1C-210ENST00000534556 SMUG1Q53HV7 270 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 ZNF506Q5JVG8 444 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 FAM74A1Q5RGS3 127 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 CFAP126Q5VTH2 177 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 UFSP1Q6NVU6 142 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 LYPD5Q6UWN5 251 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 TCTE3Q8IZS6 198 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 NHLRC2Q8NBF2 726 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 SPXQ9BT56 116 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 UPK3BQ9BT76 320 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 DERL1Q9BUN8 251 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 MLST8Q9BVC4 326 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 ZNF471Q9BX82 626 aaPredicted RBP3.45□□□□□ -1.86
USH1C-210ENST00000534556 SAMD10Q9BYL1 202 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 KRTAP4-5Q9BYR2 181 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 Q9H8V8 135 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 PRO0255Q9UI72 69 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 HHLA3Q9XRX5 114 aa3.45□□□□□ -1.86
USH1C-210ENST00000534556 MRPS16Q9Y3D3 137 aaKnown RBP3.45□□□□□ -1.86
USH1C-210ENST00000534556 SRRM2Q9UQ35 2752 aaKnown RBP3.44□□□□□ -1.86
USH1C-210ENST00000534556 TRAV4A0A0B4J268 109 aa3.44□□□□□ -1.86
USH1C-210ENST00000534556 TRBV6-1A0A0K0K1D8 114 aa3.44□□□□□ -1.86
USH1C-210ENST00000534556 SERTM2A0A1B0GWG4 89 aa3.44□□□□□ -1.86
USH1C-210ENST00000534556 C9JCJ5 164 aa3.44□□□□□ -1.86
USH1C-210ENST00000534556 M0R036 132 aa3.44□□□□□ -1.86
USH1C-210ENST00000534556 M0R2P5 195 aa3.44□□□□□ -1.86
USH1C-210ENST00000534556 NXPH4O95158 308 aa3.44□□□□□ -1.86
USH1C-210ENST00000534556 LTAP01374 205 aa3.44□□□□□ -1.86
USH1C-210ENST00000534556 IFNA7P01567 189 aa3.44□□□□□ -1.86
USH1C-210ENST00000534556 IGLV2-8P01709 118 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms