RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 M0R2Z0 102 aa11.11□□□□□ -0.63
CHMP4A-207ENST00000533523 RPL35P42766 123 aaKnown RBP11.11□□□□□ -0.63
CHMP4A-207ENST00000533523 ERCC8Q13216 396 aa11.11□□□□□ -0.63
CHMP4A-207ENST00000533523 TMEM75Q8N9X5 138 aa11.11□□□□□ -0.63
CHMP4A-207ENST00000533523 SGK494Q96LW2 274 aa11.11□□□□□ -0.63
CHMP4A-207ENST00000533523 VGLL1Q99990 258 aa11.11□□□□□ -0.63
CHMP4A-207ENST00000533523 KLF12Q9Y4X4 402 aa11.11□□□□□ -0.63
CHMP4A-207ENST00000533523 DMBT1Q9UGM3 2413 aaPredicted RBP11.11□□□□□ -0.63
CHMP4A-207ENST00000533523 VPS13BQ7Z7G8 4022 aa11.11□□□□□ -0.63
CHMP4A-207ENST00000533523 IGLV2-11P01706 119 aa11.1□□□□□ -0.63
CHMP4A-207ENST00000533523 S100A9P06702 114 aaKnown RBP11.1□□□□□ -0.63
CHMP4A-207ENST00000533523 UBE2G1P62253 170 aa11.1□□□□□ -0.63
CHMP4A-207ENST00000533523 TMEM183BQ1AE95 376 aa11.1□□□□□ -0.63
CHMP4A-207ENST00000533523 C15orf53Q8NAA6 179 aa11.1□□□□□ -0.63
CHMP4A-207ENST00000533523 FMC1Q96HJ9 113 aa11.1□□□□□ -0.63
CHMP4A-207ENST00000533523 SMIM7Q9BQ49 75 aa11.1□□□□□ -0.63
CHMP4A-207ENST00000533523 ZNF727A8MUV8 499 aa11.09□□□□□ -0.63
CHMP4A-207ENST00000533523 NPIPB6E9PJ23 425 aa11.09□□□□□ -0.63
CHMP4A-207ENST00000533523 CRXO43186 299 aaPredicted RBP11.09□□□□□ -0.63
CHMP4A-207ENST00000533523 ADCYAP1P18509 176 aa11.09□□□□□ -0.63
CHMP4A-207ENST00000533523 TSPOP30536 169 aa11.09□□□□□ -0.63
CHMP4A-207ENST00000533523 CDKN1BP46527 198 aa11.09□□□□□ -0.63
CHMP4A-207ENST00000533523 TAS2R60P59551 318 aa11.09□□□□□ -0.63
CHMP4A-207ENST00000533523 FLI1Q01543 452 aaPredicted RBP11.09□□□□□ -0.63
CHMP4A-207ENST00000533523 C9orf47Q6ZRZ4 202 aa11.09□□□□□ -0.63
CHMP4A-207ENST00000533523 Q86TA4 180 aa11.09□□□□□ -0.63
CHMP4A-207ENST00000533523 TMEM256Q8N2U0 113 aa11.09□□□□□ -0.63
CHMP4A-207ENST00000533523 AGPAT4-IT1Q9H0P7 198 aa11.09□□□□□ -0.63
CHMP4A-207ENST00000533523 PSG8Q9UQ74 426 aa11.09□□□□□ -0.63
CHMP4A-207ENST00000533523 TRBV6-1A0A0K0K1D8 114 aa11.08□□□□□ -0.64
CHMP4A-207ENST00000533523 FBLL1A6NHQ2 334 aaKnown RBP11.08□□□□□ -0.64
CHMP4A-207ENST00000533523 F8W036 122 aa11.08□□□□□ -0.64
CHMP4A-207ENST00000533523 TNP2Q05952 138 aa11.08□□□□□ -0.64
CHMP4A-207ENST00000533523 FAM74A3Q4VXF1 159 aa11.08□□□□□ -0.64
CHMP4A-207ENST00000533523 CENPWQ5EE01 88 aa11.08□□□□□ -0.64
CHMP4A-207ENST00000533523 TMEM78Q5T7P6 136 aa11.08□□□□□ -0.64
CHMP4A-207ENST00000533523 PRNTQ86SH4 94 aa11.08□□□□□ -0.64
CHMP4A-207ENST00000533523 Q8TAT8 98 aa11.08□□□□□ -0.64
CHMP4A-207ENST00000533523 TRBV20OR9-2A0A075B6H5 130 aa11.07□□□□□ -0.64
CHMP4A-207ENST00000533523 TRAV12-2A0A075B6T6 113 aa11.07□□□□□ -0.64
CHMP4A-207ENST00000533523 ZNF138P52744 262 aa11.07□□□□□ -0.64
CHMP4A-207ENST00000533523 FAM3BP58499 235 aaPredicted RBP11.07□□□□□ -0.64
CHMP4A-207ENST00000533523 BAGE2Q86Y30 109 aa11.07□□□□□ -0.64
CHMP4A-207ENST00000533523 LINC00477Q96M19 166 aa11.07□□□□□ -0.64
CHMP4A-207ENST00000533523 ODF3Q96PU9 254 aa11.07□□□□□ -0.64
CHMP4A-207ENST00000533523 C20orf144Q9BQM9 153 aa11.07□□□□□ -0.64
CHMP4A-207ENST00000533523 SEC11CQ9BY50 192 aa11.07□□□□□ -0.64
CHMP4A-207ENST00000533523 ZNF705GA8MUZ8 300 aaPredicted RBP11.06□□□□□ -0.64
CHMP4A-207ENST00000533523 KRBOX1C9JBD0 128 aa11.06□□□□□ -0.64
CHMP4A-207ENST00000533523 C9JCJ5 164 aa11.06□□□□□ -0.64
CHMP4A-207ENST00000533523 LTAP01374 205 aa11.06□□□□□ -0.64
CHMP4A-207ENST00000533523 CT45A10P0DMU9 189 aa11.06□□□□□ -0.64
CHMP4A-207ENST00000533523 LEPP41159 167 aa11.06□□□□□ -0.64
CHMP4A-207ENST00000533523 GNG4P50150 75 aa11.06□□□□□ -0.64
CHMP4A-207ENST00000533523 MAPKAPK5-AS1Q8N8E1 139 aa11.06□□□□□ -0.64
CHMP4A-207ENST00000533523 LINC01587Q99440 93 aa11.06□□□□□ -0.64
CHMP4A-207ENST00000533523 ZNF492Q9P255 531 aa11.06□□□□□ -0.64
CHMP4A-207ENST00000533523 PGPEP1LA6NFU8 196 aa11.05□□□□□ -0.64
CHMP4A-207ENST00000533523 CDK2AP2O75956 126 aa11.05□□□□□ -0.64
CHMP4A-207ENST00000533523 NUDT3O95989 172 aa11.05□□□□□ -0.64
CHMP4A-207ENST00000533523 DEFB130BP0DP73 79 aa11.05□□□□□ -0.64
CHMP4A-207ENST00000533523 DEFB130AP0DP74 79 aa11.05□□□□□ -0.64
CHMP4A-207ENST00000533523 TMEM241Q24JQ0 296 aa11.05□□□□□ -0.64
CHMP4A-207ENST00000533523 C10orf91Q5T1B1 145 aa11.05□□□□□ -0.64
CHMP4A-207ENST00000533523 C6orf223Q8N319 242 aa11.05□□□□□ -0.64
CHMP4A-207ENST00000533523 TVP23CQ96ET8 276 aa11.05□□□□□ -0.64
CHMP4A-207ENST00000533523 NAT8Q9UHE5 227 aa11.05□□□□□ -0.64
CHMP4A-207ENST00000533523 NBDYA0A0U1RRE5 68 aa11.04□□□□□ -0.64
CHMP4A-207ENST00000533523 LYRM9A8MSI8 78 aa11.04□□□□□ -0.64
CHMP4A-207ENST00000533523 F5H768 121 aa11.04□□□□□ -0.64
CHMP4A-207ENST00000533523 H7BYZ3 331 aa11.04□□□□□ -0.64
CHMP4A-207ENST00000533523 ATP6V1G1O75348 118 aa11.04□□□□□ -0.64
CHMP4A-207ENST00000533523 IGLV2-8P01709 118 aa11.04□□□□□ -0.64
CHMP4A-207ENST00000533523 PRM2P04554 102 aa11.04□□□□□ -0.64
CHMP4A-207ENST00000533523 NHLRC2Q8NBF2 726 aa11.04□□□□□ -0.64
CHMP4A-207ENST00000533523 C8orf49Q96NF6 230 aa11.04□□□□□ -0.64
CHMP4A-207ENST00000533523 NDFIP1Q9BT67 221 aa11.04□□□□□ -0.64
CHMP4A-207ENST00000533523 ZFP30Q9Y2G7 519 aa11.04□□□□□ -0.64
CHMP4A-207ENST00000533523 CARHSP1Q9Y2V2 147 aaKnown RBP11.04□□□□□ -0.64
CHMP4A-207ENST00000533523 SAPCD1Q5SSQ6 148 aa11.03□□□□□ -0.64
CHMP4A-207ENST00000533523 TMEM183AQ8IXX5 376 aa11.03□□□□□ -0.64
CHMP4A-207ENST00000533523 OCC1Q8TAD7 63 aa11.03□□□□□ -0.64
CHMP4A-207ENST00000533523 C16orf74Q96GX8 76 aa11.03□□□□□ -0.64
CHMP4A-207ENST00000533523 SDF2L1Q9HCN8 221 aa11.03□□□□□ -0.64
CHMP4A-207ENST00000533523 LENEPQ9Y5L5 61 aa11.03□□□□□ -0.64
CHMP4A-207ENST00000533523 LY96Q9Y6Y9 160 aa11.03□□□□□ -0.64
CHMP4A-207ENST00000533523 MGST1P10620 155 aaKnown RBP11.02□□□□□ -0.65
CHMP4A-207ENST00000533523 RPL23P62829 140 aaKnown RBP11.02□□□□□ -0.65
CHMP4A-207ENST00000533523 GFI1BQ5VTD9 330 aa11.02□□□□□ -0.65
CHMP4A-207ENST00000533523 ZNF493Q6ZR52 646 aa11.02□□□□□ -0.65
CHMP4A-207ENST00000533523 LINC01551Q86U37 167 aa11.02□□□□□ -0.65
CHMP4A-207ENST00000533523 ZNRF2Q8NHG8 242 aa11.02□□□□□ -0.65
CHMP4A-207ENST00000533523 SMIM12Q96EX1 92 aa11.02□□□□□ -0.65
CHMP4A-207ENST00000533523 FAM19A4Q96LR4 140 aa11.02□□□□□ -0.65
CHMP4A-207ENST00000533523 MLST8Q9BVC4 326 aa11.02□□□□□ -0.65
CHMP4A-207ENST00000533523 TRBV7-9A0A0J9YWB2 115 aa11.01□□□□□ -0.65
CHMP4A-207ENST00000533523 K7EN84 100 aa11.01□□□□□ -0.65
CHMP4A-207ENST00000533523 CRISP2P16562 243 aa11.01□□□□□ -0.65
CHMP4A-207ENST00000533523 ADIRFQ15847 76 aa11.01□□□□□ -0.65
CHMP4A-207ENST00000533523 SMUG1Q53HV7 270 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 179.2 ms