RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 LINC00173Q6ZV60 143 aa11.96□□□□□ -0.5
USH1C-204ENST00000526313 FA2HQ7L5A8 372 aa11.96□□□□□ -0.5
USH1C-204ENST00000526313 SPATA12Q7Z6I5 190 aa11.96□□□□□ -0.5
USH1C-204ENST00000526313 LAMTOR2Q9Y2Q5 125 aa11.96□□□□□ -0.5
USH1C-204ENST00000526313 SELENOKQ9Y6D0 94 aa11.96□□□□□ -0.5
USH1C-204ENST00000526313 KLLNB2CW77 178 aa11.95□□□□□ -0.5
USH1C-204ENST00000526313 K7EQG2 157 aa11.95□□□□□ -0.5
USH1C-204ENST00000526313 KLHDC1Q8N7A1 406 aa11.95□□□□□ -0.5
USH1C-204ENST00000526313 DUX5Q96PT3 197 aa11.95□□□□□ -0.5
USH1C-204ENST00000526313 SYS1-DBNDD2H3BUS1 97 aa11.95□□□□□ -0.5
USH1C-204ENST00000526313 NPYP01303 97 aa11.95□□□□□ -0.5
USH1C-204ENST00000526313 KRTAP1-1Q07627 177 aa11.95□□□□□ -0.5
USH1C-204ENST00000526313 MIEN1Q9BRT3 115 aa11.95□□□□□ -0.5
USH1C-204ENST00000526313 LINC01546A6NGU7 62 aa11.94□□□□□ -0.5
USH1C-204ENST00000526313 MED14OSP0DP75 135 aa11.94□□□□□ -0.5
USH1C-204ENST00000526313 ODF3Q96PU9 254 aa11.94□□□□□ -0.5
USH1C-204ENST00000526313 HSPB8Q9UJY1 196 aa11.94□□□□□ -0.5
USH1C-204ENST00000526313 A0A096LNJ9 63 aa11.93□□□□□ -0.5
USH1C-204ENST00000526313 SMKR1H3BMG3 65 aa11.93□□□□□ -0.5
USH1C-204ENST00000526313 TCF21O43680 179 aa11.93□□□□□ -0.5
USH1C-204ENST00000526313 FOXC2Q99958 501 aa11.93□□□□□ -0.5
USH1C-204ENST00000526313 SCRT2Q9NQ03 307 aa11.93□□□□□ -0.5
USH1C-204ENST00000526313 RNASE4P34096 147 aaKnown RBP11.93□□□□□ -0.5
USH1C-204ENST00000526313 KIR3DS1Q14943 382 aa11.93□□□□□ -0.5
USH1C-204ENST00000526313 TCTEX1D4Q5JR98 221 aa11.93□□□□□ -0.5
USH1C-204ENST00000526313 ADAMTSL5Q6ZMM2 481 aa11.93□□□□□ -0.5
USH1C-204ENST00000526313 WFDC3Q8IUB2 231 aa11.93□□□□□ -0.5
USH1C-204ENST00000526313 LOC389332A0A1B0GUA5 103 aa11.92□□□□□ -0.5
USH1C-204ENST00000526313 EVI2AP22794 236 aa11.92□□□□□ -0.5
USH1C-204ENST00000526313 ANXA2RQ3ZCQ2 193 aa11.92□□□□□ -0.5
USH1C-204ENST00000526313 SPATA45Q537H7 98 aa11.92□□□□□ -0.5
USH1C-204ENST00000526313 PET117Q6UWS5 81 aa11.92□□□□□ -0.5
USH1C-204ENST00000526313 C18orf65Q6ZTR6 163 aa11.92□□□□□ -0.5
USH1C-204ENST00000526313 DEFB125Q8N687 156 aa11.92□□□□□ -0.5
USH1C-204ENST00000526313 ZNF747Q9BV97 191 aa11.92□□□□□ -0.5
USH1C-204ENST00000526313 H3BVH4 76 aa11.92□□□□□ -0.5
USH1C-204ENST00000526313 J3KRW8 73 aa11.92□□□□□ -0.5
USH1C-204ENST00000526313 GAS8-AS1O95177 125 aa11.92□□□□□ -0.5
USH1C-204ENST00000526313 NCR2O95944 276 aa11.92□□□□□ -0.5
USH1C-204ENST00000526313 TRAV9-2A0A087WT02 112 aa11.91□□□□□ -0.5
USH1C-204ENST00000526313 A0A0J9YX75 114 aa11.91□□□□□ -0.5
USH1C-204ENST00000526313 PRSS47A8MTI9 375 aa11.91□□□□□ -0.5
USH1C-204ENST00000526313 Q6ZSV7 163 aa11.91□□□□□ -0.5
USH1C-204ENST00000526313 C4orf3Q8WVX3 66 aa11.91□□□□□ -0.5
USH1C-204ENST00000526313 MAP1LC3CQ9BXW4 147 aa11.91□□□□□ -0.5
USH1C-204ENST00000526313 C20orf202A1L168 122 aa11.9□□□□□ -0.5
USH1C-204ENST00000526313 CD5LO43866 347 aa11.9□□□□□ -0.5
USH1C-204ENST00000526313 TNFRSF6BO95407 300 aa11.9□□□□□ -0.5
USH1C-204ENST00000526313 SNRPD3P62318 126 aaKnown RBP11.9□□□□□ -0.5
USH1C-204ENST00000526313 SMIM15Q7Z3B0 74 aa11.9□□□□□ -0.5
USH1C-204ENST00000526313 DNAJC9-AS1A6NH13 148 aa11.9□□□□□ -0.5
USH1C-204ENST00000526313 ZNF688P0C7X2 276 aa11.9□□□□□ -0.5
USH1C-204ENST00000526313 ASIPP42127 132 aa11.9□□□□□ -0.5
USH1C-204ENST00000526313 SPANXN1Q5VSR9 72 aa11.9□□□□□ -0.5
USH1C-204ENST00000526313 WFDC12Q8WWY7 111 aa11.9□□□□□ -0.5
USH1C-204ENST00000526313 TLN2Q9Y4G6 2542 aa11.89□□□□□ -0.51
USH1C-204ENST00000526313 HELZ2Q9BYK8 2649 aaKnown RBP11.89□□□□□ -0.51
USH1C-204ENST00000526313 LINC01619G3V211 115 aa11.89□□□□□ -0.51
USH1C-204ENST00000526313 IGLC3P0DOY3 106 aa11.89□□□□□ -0.51
USH1C-204ENST00000526313 PSMG4Q5JS54 123 aa11.89□□□□□ -0.51
USH1C-204ENST00000526313 ATOH7Q8N100 152 aa11.89□□□□□ -0.51
USH1C-204ENST00000526313 MAP1LC3AQ9H492 121 aa11.89□□□□□ -0.51
USH1C-204ENST00000526313 AKAP9Q99996 3911 aa11.89□□□□□ -0.51
USH1C-204ENST00000526313 FLNAP21333 2647 aaKnown RBP11.89□□□□□ -0.51
USH1C-204ENST00000526313 EREGO14944 169 aa11.89□□□□□ -0.51
USH1C-204ENST00000526313 RNASE3P12724 160 aaKnown RBP11.89□□□□□ -0.51
USH1C-204ENST00000526313 TFPI2P48307 235 aa11.89□□□□□ -0.51
USH1C-204ENST00000526313 SLURP1P55000 103 aa11.89□□□□□ -0.51
USH1C-204ENST00000526313 LINC01545Q5VT33 79 aa11.89□□□□□ -0.51
USH1C-204ENST00000526313 NRACQ8N912 160 aa11.89□□□□□ -0.51
USH1C-204ENST00000526313 DEFB136Q30KP8 78 aa11.88□□□□□ -0.51
USH1C-204ENST00000526313 MAJINQ3KP22 176 aa11.88□□□□□ -0.51
USH1C-204ENST00000526313 MRPL52Q86TS9 123 aaKnown RBP11.88□□□□□ -0.51
USH1C-204ENST00000526313 ESM1Q9NQ30 184 aa11.88□□□□□ -0.51
USH1C-204ENST00000526313 CCDC168Q8NDH2 2452 aa11.88□□□□□ -0.51
USH1C-204ENST00000526313 IGLV2-18A0A075B6J9 118 aa11.87□□□□□ -0.51
USH1C-204ENST00000526313 OR4C46A6NHA9 309 aa11.87□□□□□ -0.51
USH1C-204ENST00000526313 GNRH2O43555 120 aa11.87□□□□□ -0.51
USH1C-204ENST00000526313 NXPH4O95158 308 aa11.87□□□□□ -0.51
USH1C-204ENST00000526313 GATA1P15976 413 aaPredicted RBP11.87□□□□□ -0.51
USH1C-204ENST00000526313 LEPP41159 167 aa11.87□□□□□ -0.51
USH1C-204ENST00000526313 ZNF705AQ6ZN79 300 aaPredicted RBP11.87□□□□□ -0.51
USH1C-204ENST00000526313 OR11H1Q8NG94 326 aa11.87□□□□□ -0.51
USH1C-204ENST00000526313 NXT2Q9NPJ8 142 aaKnown RBP11.87□□□□□ -0.51
USH1C-204ENST00000526313 M0R143 59 aa11.87□□□□□ -0.51
USH1C-204ENST00000526313 HBDP02042 147 aa11.87□□□□□ -0.51
USH1C-204ENST00000526313 OR1N2Q8NGR9 330 aa11.87□□□□□ -0.51
USH1C-204ENST00000526313 OR2K2Q8NGT1 345 aa11.87□□□□□ -0.51
USH1C-204ENST00000526313 MYO9AB2RTY4 2548 aa11.86□□□□□ -0.51
USH1C-204ENST00000526313 TRAV2A0A0B4J234 112 aa11.86□□□□□ -0.51
USH1C-204ENST00000526313 IGLL1P15814 213 aa11.86□□□□□ -0.51
USH1C-204ENST00000526313 S100A4P26447 101 aaKnown RBP11.86□□□□□ -0.51
USH1C-204ENST00000526313 NUTF2P61970 127 aaKnown RBP11.86□□□□□ -0.51
USH1C-204ENST00000526313 MRAP2Q96G30 205 aa11.86□□□□□ -0.51
USH1C-204ENST00000526313 UQCR10Q9UDW1 63 aa11.86□□□□□ -0.51
USH1C-204ENST00000526313 C7orf71A4D174 169 aa11.86□□□□□ -0.51
USH1C-204ENST00000526313 FOXI2Q6ZQN5 318 aa11.86□□□□□ -0.51
USH1C-204ENST00000526313 Q8N8P6 123 aa11.86□□□□□ -0.51
USH1C-204ENST00000526313 SNHG12Q9BXW3 62 aa11.86□□□□□ -0.51
USH1C-204ENST00000526313 PHLDA3Q9Y5J5 127 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms