RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 FXYD6-FXYD2A0A087WZ82 144 aa13.33□□□□□ -0.28
USP40-217ENST00000496298 BORCS7-ASMTA0A0B4J1R7 106 aa13.33□□□□□ -0.28
USP40-217ENST00000496298 GNRH2O43555 120 aa13.33□□□□□ -0.28
USP40-217ENST00000496298 RGS21Q2M5E4 152 aa13.33□□□□□ -0.28
USP40-217ENST00000496298 C8orf49Q96NF6 230 aa13.33□□□□□ -0.28
USP40-217ENST00000496298 GGTLC3B5MD39 225 aa13.32□□□□□ -0.28
USP40-217ENST00000496298 F6UZH7 168 aa13.32□□□□□ -0.28
USP40-217ENST00000496298 IGLV2-11P01706 119 aa13.32□□□□□ -0.28
USP40-217ENST00000496298 SUMO1P63165 101 aaKnown RBP13.32□□□□□ -0.28
USP40-217ENST00000496298 MRPL23Q16540 153 aaKnown RBP13.32□□□□□ -0.28
USP40-217ENST00000496298 ZNF479Q96JC4 524 aa13.32□□□□□ -0.28
USP40-217ENST00000496298 KCNS1Q96KK3 526 aa13.32□□□□□ -0.28
USP40-217ENST00000496298 NAGKQ9UJ70 344 aa13.32□□□□□ -0.28
USP40-217ENST00000496298 EPDR1Q9UM22 224 aa13.32□□□□□ -0.28
USP40-217ENST00000496298 K7EQM0 130 aa13.31□□□□□ -0.28
USP40-217ENST00000496298 M0R2P5 195 aa13.31□□□□□ -0.28
USP40-217ENST00000496298 TYMSP04818 313 aa13.31□□□□□ -0.28
USP40-217ENST00000496298 ZNF726P1Q15940 193 aa13.31□□□□□ -0.28
USP40-217ENST00000496298 SGK494Q96LW2 274 aa13.31□□□□□ -0.28
USP40-217ENST00000496298 NDFIP1Q9BT67 221 aa13.31□□□□□ -0.28
USP40-217ENST00000496298 PSG8Q9UQ74 426 aa13.31□□□□□ -0.28
USP40-217ENST00000496298 RYR1P21817 5038 aa13.3□□□□□ -0.28
USP40-217ENST00000496298 TRAV4A0A0B4J268 109 aa13.3□□□□□ -0.28
USP40-217ENST00000496298 TRGV4A0A0C4DH28 118 aa13.3□□□□□ -0.28
USP40-217ENST00000496298 A0A1W2PRE2 83 aa13.3□□□□□ -0.28
USP40-217ENST00000496298 FBLL1A6NHQ2 334 aaKnown RBP13.3□□□□□ -0.28
USP40-217ENST00000496298 SFTA3P0C7M3 94 aa13.3□□□□□ -0.28
USP40-217ENST00000496298 ZNF80P51504 273 aaPredicted RBP13.3□□□□□ -0.28
USP40-217ENST00000496298 LYPD5Q6UWN5 251 aa13.3□□□□□ -0.28
USP40-217ENST00000496298 SDF2L1Q9HCN8 221 aa13.3□□□□□ -0.28
USP40-217ENST00000496298 CTXND1A0A1B0GTU2 59 aa13.29□□□□□ -0.28
USP40-217ENST00000496298 FLI1Q01543 452 aaPredicted RBP13.29□□□□□ -0.28
USP40-217ENST00000496298 ZNF575Q86XF7 245 aa13.29□□□□□ -0.28
USP40-217ENST00000496298 CYB561D1Q8N8Q1 229 aa13.29□□□□□ -0.28
USP40-217ENST00000496298 TMEM75Q8N9X5 138 aa13.29□□□□□ -0.28
USP40-217ENST00000496298 C11orf21Q9P2W6 132 aa13.29□□□□□ -0.28
USP40-217ENST00000496298 TAAR5O14804 337 aa13.28□□□□□ -0.28
USP40-217ENST00000496298 SIVA1O15304 175 aa13.28□□□□□ -0.28
USP40-217ENST00000496298 NEGR1Q7Z3B1 354 aa13.28□□□□□ -0.28
USP40-217ENST00000496298 CYTL1Q9NRR1 136 aa13.28□□□□□ -0.28
USP40-217ENST00000496298 K7EQD1 137 aa13.27□□□□□ -0.29
USP40-217ENST00000496298 NXPH4O95158 308 aa13.27□□□□□ -0.29
USP40-217ENST00000496298 ORM1P02763 201 aa13.27□□□□□ -0.29
USP40-217ENST00000496298 SAPCD1Q5SSQ6 148 aa13.27□□□□□ -0.29
USP40-217ENST00000496298 OR4C5Q8NGB2 326 aa13.27□□□□□ -0.29
USP40-217ENST00000496298 KRTAP17-1Q9BYP8 105 aa13.27□□□□□ -0.29
USP40-217ENST00000496298 GCGP01275 180 aa13.26□□□□□ -0.29
USP40-217ENST00000496298 PFN1P07737 140 aaKnown RBP13.26□□□□□ -0.29
USP40-217ENST00000496298 SMUG1Q53HV7 270 aa13.26□□□□□ -0.29
USP40-217ENST00000496298 PRNTQ86SH4 94 aa13.25□□□□□ -0.29
USP40-217ENST00000496298 PTH2Q96A98 100 aa13.25□□□□□ -0.29
USP40-217ENST00000496298 ARPC5O15511 151 aa13.24□□□□□ -0.29
USP40-217ENST00000496298 GYPEP15421 78 aa13.24□□□□□ -0.29
USP40-217ENST00000496298 SRIP30626 198 aa13.24□□□□□ -0.29
USP40-217ENST00000496298 AKR1C8PQ5T2L2 129 aa13.24□□□□□ -0.29
USP40-217ENST00000496298 Q6ZRN7 208 aaPredicted RBP13.24□□□□□ -0.29
USP40-217ENST00000496298 C9orf85Q96MD7 179 aa13.24□□□□□ -0.29
USP40-217ENST00000496298 NKX6-2Q9C056 277 aaPredicted RBP13.24□□□□□ -0.29
USP40-217ENST00000496298 C9JCJ5 164 aa13.23□□□□□ -0.29
USP40-217ENST00000496298 CIDEAO60543 219 aa13.23□□□□□ -0.29
USP40-217ENST00000496298 GATA1P15976 413 aaPredicted RBP13.23□□□□□ -0.29
USP40-217ENST00000496298 LINC00315P59091 139 aa13.23□□□□□ -0.29
USP40-217ENST00000496298 ZFP69Q49AA0 526 aa13.23□□□□□ -0.29
USP40-217ENST00000496298 PCNPQ8WW12 178 aaKnown RBP13.23□□□□□ -0.29
USP40-217ENST00000496298 LINC00479Q96M42 142 aa13.23□□□□□ -0.29
USP40-217ENST00000496298 FAM74A7A6NL05 159 aa13.22□□□□□ -0.29
USP40-217ENST00000496298 C16orf90A8MZG2 172 aa13.22□□□□□ -0.29
USP40-217ENST00000496298 ZNF876PQ49A33 203 aa13.22□□□□□ -0.29
USP40-217ENST00000496298 TXNDC17Q9BRA2 123 aa13.22□□□□□ -0.29
USP40-217ENST00000496298 K7EP13 123 aa13.21□□□□□ -0.29
USP40-217ENST00000496298 RS1O15537 224 aa13.21□□□□□ -0.29
USP40-217ENST00000496298 IFNA7P01567 189 aa13.21□□□□□ -0.29
USP40-217ENST00000496298 RNASE3P12724 160 aaKnown RBP13.21□□□□□ -0.29
USP40-217ENST00000496298 FGF8P55075 233 aaPredicted RBP13.21□□□□□ -0.29
USP40-217ENST00000496298 UBE2G2P60604 165 aa13.21□□□□□ -0.29
USP40-217ENST00000496298 ZNF345Q14585 488 aa13.21□□□□□ -0.29
USP40-217ENST00000496298 DPPA3Q6W0C5 159 aa13.21□□□□□ -0.29
USP40-217ENST00000496298 SH2D6Q7Z4S9 175 aa13.21□□□□□ -0.29
USP40-217ENST00000496298 HIST1H2BAQ96A08 127 aa13.21□□□□□ -0.29
USP40-217ENST00000496298 ARL2-SNX15V9GYD0 113 aa13.21□□□□□ -0.29
USP40-217ENST00000496298 LRP1BQ9NZR2 4599 aa13.21□□□□□ -0.29
USP40-217ENST00000496298 TRAV34A0A0B4J273 112 aa13.2□□□□□ -0.3
USP40-217ENST00000496298 PEX7O00628 323 aa13.2□□□□□ -0.3
USP40-217ENST00000496298 PPT1P50897 306 aa13.2□□□□□ -0.3
USP40-217ENST00000496298 TIRAPP58753 221 aa13.2□□□□□ -0.3
USP40-217ENST00000496298 CFAP126Q5VTH2 177 aa13.2□□□□□ -0.3
USP40-217ENST00000496298 COX8CQ7Z4L0 72 aa13.2□□□□□ -0.3
USP40-217ENST00000496298 KCNRGQ8N5I3 272 aa13.2□□□□□ -0.3
USP40-217ENST00000496298 IGKV3D-20A0A0C4DH25 116 aa13.19□□□□□ -0.3
USP40-217ENST00000496298 LOC100131303A0A0U1RQF7 123 aa13.19□□□□□ -0.3
USP40-217ENST00000496298 MAP1LC3B2A6NCE7 125 aa13.19□□□□□ -0.3
USP40-217ENST00000496298 PGPEP1LA6NFU8 196 aa13.19□□□□□ -0.3
USP40-217ENST00000496298 FABP5P3A8MUU1 101 aa13.19□□□□□ -0.3
USP40-217ENST00000496298 SMLR1H3BR10 107 aa13.19□□□□□ -0.3
USP40-217ENST00000496298 MAP1LC3BQ9GZQ8 125 aa13.19□□□□□ -0.3
USP40-217ENST00000496298 HSPG2P98160 4391 aa13.18□□□□□ -0.3
USP40-217ENST00000496298 HMSDA8MTL9 139 aa13.18□□□□□ -0.3
USP40-217ENST00000496298 CDK2AP2O75956 126 aa13.18□□□□□ -0.3
USP40-217ENST00000496298 DNAH10OSP0CZ25 163 aa13.18□□□□□ -0.3
USP40-217ENST00000496298 FHITP49789 147 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms