RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ONECUT1Q9UBC0 465 aa7.4□□□□□ -1.22
SYNE1-230ENST00000495090 ZGRF1Q86YA3 2104 aa7.4□□□□□ -1.22
SYNE1-230ENST00000495090 PRSS29PA6NIE9 313 aa7.4□□□□□ -1.23
SYNE1-230ENST00000495090 IGHV3-23P01764 117 aa7.4□□□□□ -1.23
SYNE1-230ENST00000495090 RPL32P62910 135 aaKnown RBP7.4□□□□□ -1.23
SYNE1-230ENST00000495090 C2orf66Q6UXQ4 117 aa7.4□□□□□ -1.23
SYNE1-230ENST00000495090 ZFP2Q6ZN57 461 aa7.4□□□□□ -1.23
SYNE1-230ENST00000495090 RNF182Q8N6D2 247 aa7.4□□□□□ -1.23
SYNE1-230ENST00000495090 DPH3P1Q9H4G8 78 aa7.4□□□□□ -1.23
SYNE1-230ENST00000495090 MSRB2Q9Y3D2 182 aa7.4□□□□□ -1.23
SYNE1-230ENST00000495090 TRAV8-2A0A0B4J237 113 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 A0A0J9YY99 117 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 HES1Q14469 280 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 PIP4P1Q86T03 277 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 C10orf126Q8N4M7 172 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 GLMPQ8WWB7 406 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 PLEKHB2Q96CS7 222 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 VKORC1Q9BQB6 163 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 PRRC2CQ9Y520 2896 aaKnown RBP7.39□□□□□ -1.23
SYNE1-230ENST00000495090 RNF223E7ERA6 249 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 TCL1BO95988 128 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 SRD5A1P18405 259 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 ASIPP42127 132 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 ZFAND6Q6FIF0 208 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 POM121L12Q8N7R1 296 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 FAM110DQ8TAY7 271 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-230ENST00000495090 RNF183Q96D59 192 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 LINC01600Q96MT4 127 aa7.39□□□□□ -1.23
SYNE1-230ENST00000495090 CLPSL1A2RUU4 121 aa7.38□□□□□ -1.23
SYNE1-230ENST00000495090 H3BVH4 76 aa7.38□□□□□ -1.23
SYNE1-230ENST00000495090 PRTN3P24158 256 aa7.38□□□□□ -1.23
SYNE1-230ENST00000495090 CITED1Q99966 193 aa7.38□□□□□ -1.23
SYNE1-230ENST00000495090 ANAPC13Q9BS18 74 aa7.38□□□□□ -1.23
SYNE1-230ENST00000495090 ZDBF2Q9HCK1 2354 aa7.38□□□□□ -1.23
SYNE1-230ENST00000495090 TNRC18O15417 2968 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-230ENST00000495090 IGHV7-81A0A0B4J1V7 117 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 IGHV3-30P01768 117 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 IGHV3-30-5P0DP03 117 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 GAGE5Q13069 117 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 GAGE6Q13070 117 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 TEX29Q8N6K0 151 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 SLC25A29Q8N8R3 303 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 PTH2Q96A98 100 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 KLK15Q9H2R5 256 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 U3KQE9 123 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 IGLV4-69A0A075B6H9 119 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 C11orf86A6NJI1 115 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 CLEC3BP05452 202 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 CRYGDP07320 174 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 CFC1BP0CG36 223 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 CFC1P0CG37 223 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 C15orf32Q32M92 178 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 MINOS1Q5TGZ0 78 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 ANKRD29Q8N6D5 301 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 MINOS1-NBL1R4GNA1 71 aa7.37□□□□□ -1.23
SYNE1-230ENST00000495090 SPENQ96T58 3664 aaKnown RBP7.36□□□□□ -1.23
SYNE1-230ENST00000495090 GPR179Q6PRD1 2367 aa7.36□□□□□ -1.23
SYNE1-230ENST00000495090 C9orf139Q6ZV77 190 aa7.36□□□□□ -1.23
SYNE1-230ENST00000495090 TMEM141Q96I45 108 aa7.36□□□□□ -1.23
SYNE1-230ENST00000495090 METTL26Q96S19 204 aa7.36□□□□□ -1.23
SYNE1-230ENST00000495090 PRO1854Q9UHT4 67 aa7.36□□□□□ -1.23
SYNE1-230ENST00000495090 TRAV21A0A0B4J279 112 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 IGIPA6NJ69 53 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 LYNX1G3V0Z9 82 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 RHODO00212 210 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 CD3EP07766 207 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 P0DMU3 169 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 FAM231AP0DMU4 169 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 FAM231CP0DMU5 169 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 LYNX1P0DP58 116 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 PMVKQ15126 192 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 Q6Q795 121 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 ITLN2Q8WWU7 325 aaPredicted RBP7.35□□□□□ -1.23
SYNE1-230ENST00000495090 RPL39LQ96EH5 51 aaKnown RBP7.35□□□□□ -1.23
SYNE1-230ENST00000495090 LINC00477Q96M19 166 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 TIMM17AQ99595 171 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 SPANXA1Q9NS26 97 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 CUL9Q8IWT3 2517 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 IGHV4OR15-8A0A075B7B6 117 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 IGHV3OR16-8A0A075B7F1 116 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 A0A087WW49 117 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 SLC25A20O43772 301 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 NXPH4O95158 308 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 SCGB1C2P0DMR2 95 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 PRR9Q5T870 116 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 GPHB5Q86YW7 130 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 Q8N9W7 124 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 KLHL30-AS1Q8NEE0 82 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 TIMD4Q96H15 378 aa7.35□□□□□ -1.23
SYNE1-230ENST00000495090 ZZEF1O43149 2961 aa7.34□□□□□ -1.23
SYNE1-230ENST00000495090 TRBV7-1A0A0A6YYK4 115 aa7.34□□□□□ -1.23
SYNE1-230ENST00000495090 A0A0B4J2C4 111 aa7.34□□□□□ -1.23
SYNE1-230ENST00000495090 IGHV3-35A0A0C4DH35 117 aa7.34□□□□□ -1.23
SYNE1-230ENST00000495090 TRBV7-9A0A0J9YWB2 115 aa7.34□□□□□ -1.23
SYNE1-230ENST00000495090 VMO1Q7Z5L0 202 aa7.34□□□□□ -1.23
SYNE1-230ENST00000495090 ZFAND2AQ8N6M9 145 aa7.34□□□□□ -1.23
SYNE1-230ENST00000495090 CCDC140Q96MF4 163 aa7.34□□□□□ -1.23
SYNE1-230ENST00000495090 AMELXQ99217 191 aa7.34□□□□□ -1.23
SYNE1-230ENST00000495090 PHLDA3Q9Y5J5 127 aa7.34□□□□□ -1.23
SYNE1-230ENST00000495090 LOC400499M0QZD8 3231 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms