RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 COL27A1Q8IZC6 1860 aaPredicted RBP1.45□□□□□ -2.18
HMGB1-208ENST00000490788 SEC16AO15027 2179 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 BAZ2AQ9UIF9 1905 aaKnown RBP1.44□□□□□ -2.18
HMGB1-208ENST00000490788 RP1P56715 2156 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 NSG1A0A0A6YYJ2 146 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 TRBV9A0A0B4J1U6 114 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 TRAV1-1A0A0B4J248 108 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 RBAKDNA6NC62 111 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 A8MWL6 223 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 H3BMG7 143 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 J3QQQ9 107 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 FCN1O00602 326 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 CXCL13O43927 109 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 DEDDO75618 318 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 DHRS3O75911 302 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 ARL6IP5O75915 188 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 DPM2O94777 84 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 C1orf105O95561 183 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 CPSF4O95639 269 aaKnown RBP1.44□□□□□ -2.18
HMGB1-208ENST00000490788 NAPSAO96009 420 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 IGHMP01871 453 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 STATHP02808 62 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 COX8AP10176 69 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 BCL2P10415 239 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 PFN2P35080 140 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 OPRK1P41145 380 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 LEPP41159 167 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 PTGDSP41222 190 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 EFNB2P52799 333 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 FOXA3P55318 350 aaPredicted RBP1.44□□□□□ -2.18
HMGB1-208ENST00000490788 FXYD6P3P58550 94 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 KRTAP10-1P60331 282 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 RPL38P63173 70 aaKnown RBP1.44□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF90Q03938 601 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 SSBP1Q04837 148 aaKnown RBP1.44□□□□□ -2.18
HMGB1-208ENST00000490788 CD164Q04900 197 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF816Q0VGE8 651 aaPredicted RBP1.44□□□□□ -2.18
HMGB1-208ENST00000490788 IL15RAQ13261 267 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 PMVKQ15126 192 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 ELOCQ15369 112 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 SPRNQ5BIV9 151 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 DMKNQ6E0U4 476 aaPredicted RBP1.44□□□□□ -2.18
HMGB1-208ENST00000490788 NOXRED1Q6NXP6 359 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 EBLN2Q6P2I7 272 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 Q6Q795 121 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 AMTNQ6UX39 209 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 IGFL3Q6UXB1 125 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 TMEM136Q6ZRR5 245 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 CYP2G1PQ6ZSU1 146 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 Q8N9L7 120 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 NFAM1Q8NET5 270 aaPredicted RBP1.44□□□□□ -2.18
HMGB1-208ENST00000490788 OR2A1Q8NGT9 310 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 OR10J6PQ8NGY7 276 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 C10orf105Q8TEF2 133 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 TSKUQ8WUA8 353 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 IL1F10Q8WWZ1 152 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 LSM10Q969L4 123 aaKnown RBP1.44□□□□□ -2.18
HMGB1-208ENST00000490788 UBE2E3Q969T4 207 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 ADAT3Q96EY9 351 aaPredicted RBP1.44□□□□□ -2.18
HMGB1-208ENST00000490788 LINC00526Q96FQ7 95 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 DPH3Q96FX2 82 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 FAM19A4Q96LR4 140 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 SCGB3A2Q96PL1 93 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 AGMATQ9BSE5 352 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 MRPL32Q9BYC8 188 aaKnown RBP1.44□□□□□ -2.18
HMGB1-208ENST00000490788 PBOV1Q9GZY1 135 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 VSIRQ9H7M9 311 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 KCNIP2Q9NS61 270 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 SPANXCQ9NY87 97 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 RABAC1Q9UI14 185 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 KLF12Q9Y4X4 402 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 MYH9P35579 1960 aaKnown RBP1.44□□□□□ -2.18
HMGB1-208ENST00000490788 HERC1Q15751 4861 aa1.44□□□□□ -2.18
HMGB1-208ENST00000490788 DYNC2H1Q8NCM8 4307 aaKnown RBP1.44□□□□□ -2.18
HMGB1-208ENST00000490788 ABCA13Q86UQ4 5058 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 MYH10P35580 1976 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 TRAV2A0A0B4J234 112 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 IGHV5-10-1A0A0J9YXX1 117 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 LOC107986453A0A1B0GWG9 222 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 C2orf70A6NJV1 201 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 IGLL5B9A064 214 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 H7C1H1 209 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 J3QRE1 110 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 M0R2P5 195 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 OVOL1O14753 267 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 FFAR1O14842 300 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF861PO60384 105 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 PITX3O75364 302 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 NDUFB2O95178 105 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 SLC25A14O95258 325 aaPredicted RBP1.43□□□□□ -2.18
HMGB1-208ENST00000490788 NDUFC2O95298 119 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 P01737 135 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 TRACP01848 142 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 APCSP02743 223 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 FGF1P05230 155 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 CD7P09564 240 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 ASAH2BP0C7U1 165 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 FGF6P10767 208 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 HMGA1P17096 107 aaKnown RBP1.43□□□□□ -2.18
HMGB1-208ENST00000490788 FKBP2P26885 142 aaKnown RBP1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms