RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 TEX36Q5VZQ5 186 aa4.84□□□□□ -1.63
VPS13D-209ENST00000487188 LYPD2Q6UXB3 125 aa4.84□□□□□ -1.63
VPS13D-209ENST00000487188 IGHV3OR16-13A0A075B7E8 117 aa4.84□□□□□ -1.63
VPS13D-209ENST00000487188 IGHV3-74A0A0B4J1X5 117 aa4.84□□□□□ -1.63
VPS13D-209ENST00000487188 LINC01548A6NM66 108 aa4.84□□□□□ -1.63
VPS13D-209ENST00000487188 SUMO2P61956 95 aaKnown RBP4.84□□□□□ -1.63
VPS13D-209ENST00000487188 TRPT1Q86TN4 253 aaKnown RBP4.84□□□□□ -1.63
VPS13D-209ENST00000487188 DYNAPQ8N1N2 210 aa4.84□□□□□ -1.63
VPS13D-209ENST00000487188 SLC50A1Q9BRV3 221 aa4.84□□□□□ -1.63
VPS13D-209ENST00000487188 MALRD1Q5VYJ5 2156 aa4.84□□□□□ -1.63
VPS13D-209ENST00000487188 RAI1Q7Z5J4 1906 aaPredicted RBP4.84□□□□□ -1.63
VPS13D-209ENST00000487188 PCSK5Q92824 1860 aa4.84□□□□□ -1.63
VPS13D-209ENST00000487188 CACNA1BQ00975 2339 aa4.84□□□□□ -1.64
VPS13D-209ENST00000487188 IGLV3-9A0A075B6K5 115 aa4.84□□□□□ -1.64
VPS13D-209ENST00000487188 TRAV17A0A0B4J275 112 aa4.84□□□□□ -1.64
VPS13D-209ENST00000487188 IGHV3-66A0A0C4DH42 116 aa4.84□□□□□ -1.64
VPS13D-209ENST00000487188 SRD5A1P18405 259 aa4.84□□□□□ -1.64
VPS13D-209ENST00000487188 ZNF56Q15929 161 aa4.84□□□□□ -1.64
VPS13D-209ENST00000487188 C2orf82Q6UX34 121 aa4.84□□□□□ -1.64
VPS13D-209ENST00000487188 AJUBAQ96IF1 538 aa4.84□□□□□ -1.64
VPS13D-209ENST00000487188 CITED1Q99966 193 aa4.84□□□□□ -1.64
VPS13D-209ENST00000487188 ZNF256Q9Y2P7 627 aaPredicted RBP4.84□□□□□ -1.64
VPS13D-209ENST00000487188 PHLDA3Q9Y5J5 127 aa4.84□□□□□ -1.64
VPS13D-209ENST00000487188 WT1P19544 449 aaPredicted RBP4.83□□□□□ -1.64
VPS13D-209ENST00000487188 RNF182Q8N6D2 247 aa4.83□□□□□ -1.64
VPS13D-209ENST00000487188 SPEGQ15772 3267 aa4.83□□□□□ -1.64
VPS13D-209ENST00000487188 C17orf100A8MU93 164 aa4.83□□□□□ -1.64
VPS13D-209ENST00000487188 COX6CP09669 75 aa4.83□□□□□ -1.64
VPS13D-209ENST00000487188 Q8N1Y9 231 aa4.83□□□□□ -1.64
VPS13D-209ENST00000487188 DEFB104AQ8WTQ1 72 aa4.83□□□□□ -1.64
VPS13D-209ENST00000487188 BAALCQ8WXS3 180 aa4.83□□□□□ -1.64
VPS13D-209ENST00000487188 LINC01546A6NGU7 62 aa4.83□□□□□ -1.64
VPS13D-209ENST00000487188 F5H697 171 aa4.83□□□□□ -1.64
VPS13D-209ENST00000487188 FOXC1Q12948 553 aa4.83□□□□□ -1.64
VPS13D-209ENST00000487188 FAM57AQ8TBR7 257 aa4.83□□□□□ -1.64
VPS13D-209ENST00000487188 CFC1BP0CG36 223 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 CFC1P0CG37 223 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 LOXP28300 417 aaPredicted RBP4.82□□□□□ -1.64
VPS13D-209ENST00000487188 SRSF2Q01130 221 aaKnown RBP4.82□□□□□ -1.64
VPS13D-209ENST00000487188 LINC01620Q4KN68 170 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 NRACQ8N912 160 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 C8orf31Q8N9H6 132 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 TOMM6Q96B49 74 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 GPR179Q6PRD1 2367 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 IGLV2-18A0A075B6J9 118 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 IGHV3-49A0A0A0MS15 119 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 CENPVL3A0A0U1RRI6 287 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 NBR2O15453 112 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 CRLF1O75462 422 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 IGHG3P01860 377 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 PRSS2P07478 247 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 C14orf178Q8N769 122 aaPredicted RBP4.82□□□□□ -1.64
VPS13D-209ENST00000487188 NEXN-AS1Q8NBZ9 246 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 CNFNQ9BYD5 112 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 DKK4Q9UBT3 224 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 IGHV3-64A0A075B6Q5 118 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.82□□□□□ -1.64
VPS13D-209ENST00000487188 A0A0J9YY99 117 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 A4D1N5 150 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 C11orf86A6NJI1 115 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 TMEM178BH3BS89 294 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 TIMM23O14925 209 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 MRPS12O15235 138 aaKnown RBP4.82□□□□□ -1.64
VPS13D-209ENST00000487188 NHLRC4P0CG21 123 aaPredicted RBP4.82□□□□□ -1.64
VPS13D-209ENST00000487188 C9orf153Q5TBE3 101 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 Q6ZQT7 251 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 RPL39LQ96EH5 51 aaKnown RBP4.82□□□□□ -1.64
VPS13D-209ENST00000487188 SPRY4Q9C004 299 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 DPH3P1Q9H4G8 78 aa4.82□□□□□ -1.64
VPS13D-209ENST00000487188 PRAC2D3DTV9 90 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 CD7P09564 240 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 TMEM101Q96IK0 257 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 TMEM126AQ9H061 195 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 UBTD1Q9HAC8 227 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 TP53TG1Q9Y2A0 90 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 ACACAQ13085 2346 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 BUB1B-PAK6H3BSN5 160 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 PPP1R17O96001 155 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 CD59P13987 128 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 Q6Q795 121 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 RASL10AQ92737 203 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 ARRDC1-AS1Q9H2J1 176 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 ASPMQ8IZT6 3477 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 POLEQ07864 2286 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 IGKV3D-20A0A0C4DH25 116 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 TEX49A0A1B0GTD5 131 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 J3QQQ9 107 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 FAM27E3Q08E93 113 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 ZNF474Q6S9Z5 364 aaPredicted RBP4.81□□□□□ -1.64
VPS13D-209ENST00000487188 C16orf92Q96LL3 132 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 CTSZQ9UBR2 303 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 OTOGLQ3ZCN5 2332 aa4.81□□□□□ -1.64
VPS13D-209ENST00000487188 SPRY2O43597 315 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 DUSP14O95147 198 aaKnown RBP4.8□□□□□ -1.64
VPS13D-209ENST00000487188 CRYGBP07316 175 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 ID1P41134 155 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 PMVKQ15126 192 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 MRGPRG-AS1Q2M3A8 158 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 TNFRSF18Q9Y5U5 241 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 CRIP2P52943 208 aaPredicted RBP4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms