RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 TMEM75Q8N9X5 138 aa11.36□□□□□ -0.59
USP40-212ENST00000473191 RAB24Q969Q5 203 aa11.36□□□□□ -0.59
USP40-212ENST00000473191 AQP10Q96PS8 301 aa11.36□□□□□ -0.59
USP40-212ENST00000473191 TREM1Q9NP99 234 aa11.36□□□□□ -0.59
USP40-212ENST00000473191 MRPL23Q16540 153 aaKnown RBP11.35□□□□□ -0.59
USP40-212ENST00000473191 FAM74A1Q5RGS3 127 aa11.35□□□□□ -0.59
USP40-212ENST00000473191 WFDC10BQ8IUB3 73 aa11.35□□□□□ -0.59
USP40-212ENST00000473191 IQCF2Q8IXL9 164 aa11.35□□□□□ -0.59
USP40-212ENST00000473191 OR2G3Q8NGZ4 309 aa11.35□□□□□ -0.59
USP40-212ENST00000473191 SPXQ9BT56 116 aa11.35□□□□□ -0.59
USP40-212ENST00000473191 MED28Q9H204 178 aa11.35□□□□□ -0.59
USP40-212ENST00000473191 TRAV21A0A0B4J279 112 aa11.34□□□□□ -0.59
USP40-212ENST00000473191 RNF222A6NCQ9 220 aa11.34□□□□□ -0.59
USP40-212ENST00000473191 CDK2AP2O75956 126 aa11.34□□□□□ -0.59
USP40-212ENST00000473191 IGLV2-11P01706 119 aa11.34□□□□□ -0.59
USP40-212ENST00000473191 GYPEP15421 78 aa11.34□□□□□ -0.59
USP40-212ENST00000473191 GCHFRP30047 84 aa11.34□□□□□ -0.59
USP40-212ENST00000473191 NEGR1Q7Z3B1 354 aa11.34□□□□□ -0.59
USP40-212ENST00000473191 SUN5Q8TC36 379 aa11.34□□□□□ -0.59
USP40-212ENST00000473191 TRAV4A0A0B4J268 109 aa11.33□□□□□ -0.6
USP40-212ENST00000473191 GGTLC3B5MD39 225 aa11.33□□□□□ -0.6
USP40-212ENST00000473191 TCRAP04437 139 aa11.33□□□□□ -0.6
USP40-212ENST00000473191 BTF3P20290 206 aaKnown RBP11.33□□□□□ -0.6
USP40-212ENST00000473191 SLAQ13239 276 aa11.33□□□□□ -0.6
USP40-212ENST00000473191 DPPA3Q6W0C5 159 aa11.33□□□□□ -0.6
USP40-212ENST00000473191 PSMG3Q9BT73 122 aaPredicted RBP11.33□□□□□ -0.6
USP40-212ENST00000473191 M0R2P5 195 aa11.32□□□□□ -0.6
USP40-212ENST00000473191 SRIP30626 198 aa11.32□□□□□ -0.6
USP40-212ENST00000473191 SUMO1P63165 101 aaKnown RBP11.32□□□□□ -0.6
USP40-212ENST00000473191 ZNF726P1Q15940 193 aa11.32□□□□□ -0.6
USP40-212ENST00000473191 RPL7L1Q6DKI1 246 aaKnown RBP11.32□□□□□ -0.6
USP40-212ENST00000473191 ARL6IP6Q8N6S5 226 aa11.32□□□□□ -0.6
USP40-212ENST00000473191 MAPKAPK5-AS1Q8N8E1 139 aa11.32□□□□□ -0.6
USP40-212ENST00000473191 OR4C5Q8NGB2 326 aa11.32□□□□□ -0.6
USP40-212ENST00000473191 LINC00479Q96M42 142 aa11.32□□□□□ -0.6
USP40-212ENST00000473191 G3V3Q6 166 aa11.31□□□□□ -0.6
USP40-212ENST00000473191 DNAH10OSP0CZ25 163 aa11.31□□□□□ -0.6
USP40-212ENST00000473191 C5orf17Q8NAS9 161 aa11.31□□□□□ -0.6
USP40-212ENST00000473191 SDF2L1Q9HCN8 221 aa11.31□□□□□ -0.6
USP40-212ENST00000473191 PSG8Q9UQ74 426 aa11.31□□□□□ -0.6
USP40-212ENST00000473191 IGHV3-73A0A0B4J1V6 119 aa11.3□□□□□ -0.6
USP40-212ENST00000473191 C9JCJ5 164 aa11.3□□□□□ -0.6
USP40-212ENST00000473191 GCGP01275 180 aa11.3□□□□□ -0.6
USP40-212ENST00000473191 PRNTQ86SH4 94 aa11.3□□□□□ -0.6
USP40-212ENST00000473191 ASB13Q8WXK3 278 aa11.3□□□□□ -0.6
USP40-212ENST00000473191 EPDR1Q9UM22 224 aa11.3□□□□□ -0.6
USP40-212ENST00000473191 TRAV34A0A0B4J273 112 aa11.29□□□□□ -0.6
USP40-212ENST00000473191 GIPP09681 153 aaPredicted RBP11.29□□□□□ -0.6
USP40-212ENST00000473191 FXYD6-FXYD2A0A087WZ82 144 aa11.28□□□□□ -0.6
USP40-212ENST00000473191 PGPEP1LA6NFU8 196 aa11.28□□□□□ -0.6
USP40-212ENST00000473191 CXorf1O96002 111 aa11.28□□□□□ -0.6
USP40-212ENST00000473191 RNASE3P12724 160 aaKnown RBP11.28□□□□□ -0.6
USP40-212ENST00000473191 GATA1P15976 413 aaPredicted RBP11.28□□□□□ -0.6
USP40-212ENST00000473191 SERF2P84101 59 aa11.28□□□□□ -0.6
USP40-212ENST00000473191 FLI1Q01543 452 aaPredicted RBP11.28□□□□□ -0.6
USP40-212ENST00000473191 PCNPQ8WW12 178 aaKnown RBP11.28□□□□□ -0.6
USP40-212ENST00000473191 ACTR3CQ9C0K3 210 aaPredicted RBP11.28□□□□□ -0.6
USP40-212ENST00000473191 TNFSF18Q9UNG2 199 aa11.28□□□□□ -0.6
USP40-212ENST00000473191 LY96Q9Y6Y9 160 aa11.28□□□□□ -0.6
USP40-212ENST00000473191 PFDN1O60925 122 aa11.27□□□□□ -0.61
USP40-212ENST00000473191 ORM1P02763 201 aa11.27□□□□□ -0.61
USP40-212ENST00000473191 FGF8P55075 233 aaPredicted RBP11.27□□□□□ -0.61
USP40-212ENST00000473191 UBE2G2P60604 165 aa11.27□□□□□ -0.61
USP40-212ENST00000473191 ZNF876PQ49A33 203 aa11.27□□□□□ -0.61
USP40-212ENST00000473191 CFAP126Q5VTH2 177 aa11.27□□□□□ -0.61
USP40-212ENST00000473191 SLC25A29Q8N8R3 303 aa11.27□□□□□ -0.61
USP40-212ENST00000473191 KCNS1Q96KK3 526 aa11.27□□□□□ -0.61
USP40-212ENST00000473191 C9orf85Q96MD7 179 aa11.27□□□□□ -0.61
USP40-212ENST00000473191 IGKV3D-20A0A0C4DH25 116 aa11.26□□□□□ -0.61
USP40-212ENST00000473191 MBP02144 154 aa11.26□□□□□ -0.61
USP40-212ENST00000473191 PFN1P07737 140 aaKnown RBP11.26□□□□□ -0.61
USP40-212ENST00000473191 AKAP14Q86UN6 197 aa11.26□□□□□ -0.61
USP40-212ENST00000473191 CYB561D1Q8N8Q1 229 aa11.26□□□□□ -0.61
USP40-212ENST00000473191 NDFIP1Q9BT67 221 aa11.26□□□□□ -0.61
USP40-212ENST00000473191 TMEM167BQ9NRX6 74 aa11.26□□□□□ -0.61
USP40-212ENST00000473191 SERTM2A0A1B0GWG4 89 aa11.25□□□□□ -0.61
USP40-212ENST00000473191 SMLR1H3BR10 107 aa11.25□□□□□ -0.61
USP40-212ENST00000473191 TAAR5O14804 337 aa11.25□□□□□ -0.61
USP40-212ENST00000473191 RS1O15537 224 aa11.25□□□□□ -0.61
USP40-212ENST00000473191 ZNF506Q5JVG8 444 aa11.25□□□□□ -0.61
USP40-212ENST00000473191 Q6ZSN1 163 aa11.25□□□□□ -0.61
USP40-212ENST00000473191 NHLRC2Q8NBF2 726 aa11.25□□□□□ -0.61
USP40-212ENST00000473191 INO80EQ8NBZ0 244 aaPredicted RBP11.25□□□□□ -0.61
USP40-212ENST00000473191 OR2T35Q8NGX2 323 aa11.25□□□□□ -0.61
USP40-212ENST00000473191 TXNDC17Q9BRA2 123 aa11.25□□□□□ -0.61
USP40-212ENST00000473191 A0A087WTM6 91 aa11.24□□□□□ -0.61
USP40-212ENST00000473191 FBLL1A6NHQ2 334 aaKnown RBP11.24□□□□□ -0.61
USP40-212ENST00000473191 SMUG1Q53HV7 270 aa11.24□□□□□ -0.61
USP40-212ENST00000473191 Q8N1X5 172 aa11.24□□□□□ -0.61
USP40-212ENST00000473191 CYTL1Q9NRR1 136 aa11.24□□□□□ -0.61
USP40-212ENST00000473191 MSRB1Q9NZV6 116 aa11.24□□□□□ -0.61
USP40-212ENST00000473191 Q9UF83 564 aa11.24□□□□□ -0.61
USP40-212ENST00000473191 ARL2-SNX15V9GYD0 113 aa11.24□□□□□ -0.61
USP40-212ENST00000473191 A0A1W2PRE2 83 aa11.23□□□□□ -0.61
USP40-212ENST00000473191 K7EQM0 130 aa11.23□□□□□ -0.61
USP40-212ENST00000473191 CRIP1P50238 77 aa11.23□□□□□ -0.61
USP40-212ENST00000473191 JPT2Q9H910 190 aa11.23□□□□□ -0.61
USP40-212ENST00000473191 SCRT2Q9NQ03 307 aa11.23□□□□□ -0.61
USP40-212ENST00000473191 CTXND1A0A1B0GTU2 59 aa11.22□□□□□ -0.61
USP40-212ENST00000473191 FAM74A7A6NL05 159 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 1371.8 ms