RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 IGHV3-73A0A0B4J1V6 119 aa11.92□□□□□ -0.5
SHH-205ENST00000472308 OR10J4P0C629 311 aa11.92□□□□□ -0.5
SHH-205ENST00000472308 BCAP31P51572 246 aa11.92□□□□□ -0.5
SHH-205ENST00000472308 COX11Q9Y6N1 276 aa11.92□□□□□ -0.5
SHH-205ENST00000472308 FGF7P21781 194 aa11.91□□□□□ -0.5
SHH-205ENST00000472308 TOR2AQ5JU69 321 aa11.91□□□□□ -0.5
SHH-205ENST00000472308 OR51M1Q9H341 326 aa11.91□□□□□ -0.5
SHH-205ENST00000472308 LSM5Q9Y4Y9 91 aaKnown RBP11.91□□□□□ -0.5
SHH-205ENST00000472308 LENEPQ9Y5L5 61 aa11.91□□□□□ -0.5
SHH-205ENST00000472308 C5orf51A6NDU8 294 aa11.9□□□□□ -0.5
SHH-205ENST00000472308 CCSO14618 274 aa11.9□□□□□ -0.5
SHH-205ENST00000472308 LINC00694P0DN24 101 aa11.9□□□□□ -0.5
SHH-205ENST00000472308 ASIPP42127 132 aa11.9□□□□□ -0.5
SHH-205ENST00000472308 MITD1Q8WV92 249 aa11.9□□□□□ -0.5
SHH-205ENST00000472308 IGSF23A1L1A6 192 aa11.89□□□□□ -0.51
SHH-205ENST00000472308 GGTLC3B5MD39 225 aa11.89□□□□□ -0.51
SHH-205ENST00000472308 ZNF876PQ49A33 203 aa11.89□□□□□ -0.51
SHH-205ENST00000472308 PAXXQ9BUH6 204 aa11.89□□□□□ -0.51
SHH-205ENST00000472308 NPCDR1Q9BY65 106 aa11.89□□□□□ -0.51
SHH-205ENST00000472308 IGKV2D-24A0A075B6R9 120 aa11.88□□□□□ -0.51
SHH-205ENST00000472308 DIRC3C9JPN6 131 aa11.88□□□□□ -0.51
SHH-205ENST00000472308 S100A11P31949 105 aa11.88□□□□□ -0.51
SHH-205ENST00000472308 CSN1S1P47710 185 aa11.88□□□□□ -0.51
SHH-205ENST00000472308 SULT1A1P50225 295 aa11.88□□□□□ -0.51
SHH-205ENST00000472308 RANP62826 216 aaKnown RBP11.88□□□□□ -0.51
SHH-205ENST00000472308 MRPS26Q9BYN8 205 aaKnown RBP11.88□□□□□ -0.51
SHH-205ENST00000472308 RPH3ALQ9UNE2 315 aa11.88□□□□□ -0.51
SHH-205ENST00000472308 TMBIM6P55061 237 aa11.87□□□□□ -0.51
SHH-205ENST00000472308 TMED6Q8WW62 240 aa11.87□□□□□ -0.51
SHH-205ENST00000472308 RMI2Q96E14 147 aa11.87□□□□□ -0.51
SHH-205ENST00000472308 BCL7BQ9BQE9 202 aa11.87□□□□□ -0.51
SHH-205ENST00000472308 SDF2L1Q9HCN8 221 aa11.87□□□□□ -0.51
SHH-205ENST00000472308 LYRM2Q9NU23 88 aaPredicted RBP11.87□□□□□ -0.51
SHH-205ENST00000472308 CIDEAO60543 219 aa11.86□□□□□ -0.51
SHH-205ENST00000472308 BTCP35070 178 aa11.86□□□□□ -0.51
SHH-205ENST00000472308 Q6ZRU5 148 aa11.86□□□□□ -0.51
SHH-205ENST00000472308 TMEM252Q8N6L7 170 aa11.86□□□□□ -0.51
SHH-205ENST00000472308 TVP23CQ96ET8 276 aa11.86□□□□□ -0.51
SHH-205ENST00000472308 Q9UF83 564 aa11.86□□□□□ -0.51
SHH-205ENST00000472308 TRAV8-1A0A0A6YYK1 113 aa11.85□□□□□ -0.51
SHH-205ENST00000472308 TRAV21A0A0B4J279 112 aa11.85□□□□□ -0.51
SHH-205ENST00000472308 F6UZH7 168 aa11.85□□□□□ -0.51
SHH-205ENST00000472308 H3BMQ9 156 aa11.85□□□□□ -0.51
SHH-205ENST00000472308 MGST1P10620 155 aaKnown RBP11.85□□□□□ -0.51
SHH-205ENST00000472308 INPP1P49441 399 aa11.85□□□□□ -0.51
SHH-205ENST00000472308 GAGE12JA6NER3 117 aa11.84□□□□□ -0.51
SHH-205ENST00000472308 GAGE1Q13065 139 aa11.84□□□□□ -0.51
SHH-205ENST00000472308 GAGE4Q13068 117 aa11.84□□□□□ -0.51
SHH-205ENST00000472308 GAGE5Q13069 117 aa11.84□□□□□ -0.51
SHH-205ENST00000472308 GAGE13Q4V321 117 aa11.84□□□□□ -0.51
SHH-205ENST00000472308 ASB13Q8WXK3 278 aa11.84□□□□□ -0.51
SHH-205ENST00000472308 ATP5SQ99766 215 aa11.84□□□□□ -0.51
SHH-205ENST00000472308 NAP1L6A6NFF2 107 aa11.83□□□□□ -0.52
SHH-205ENST00000472308 PANO1I0J062 215 aa11.83□□□□□ -0.52
SHH-205ENST00000472308 HBG1P69891 147 aa11.83□□□□□ -0.52
SHH-205ENST00000472308 HBG2P69892 147 aa11.83□□□□□ -0.52
SHH-205ENST00000472308 ZNF506Q5JVG8 444 aa11.83□□□□□ -0.52
SHH-205ENST00000472308 ATRAIDQ6UW56 229 aa11.83□□□□□ -0.52
SHH-205ENST00000472308 STX12Q86Y82 276 aa11.83□□□□□ -0.52
SHH-205ENST00000472308 THAP6Q8TBB0 222 aa11.83□□□□□ -0.52
SHH-205ENST00000472308 KCNS1Q96KK3 526 aa11.83□□□□□ -0.52
SHH-205ENST00000472308 C11orf21Q9P2W6 132 aa11.83□□□□□ -0.52
SHH-205ENST00000472308 KLK12Q9UKR0 248 aa11.83□□□□□ -0.52
SHH-205ENST00000472308 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.83□□□□□ -0.52
SHH-205ENST00000472308 PGPEP1LA6NFU8 196 aa11.82□□□□□ -0.52
SHH-205ENST00000472308 FAM25EA8MYX2 175 aa11.82□□□□□ -0.52
SHH-205ENST00000472308 OR7C2O60412 319 aa11.82□□□□□ -0.52
SHH-205ENST00000472308 ATP6V1FQ16864 119 aa11.82□□□□□ -0.52
SHH-205ENST00000472308 SPANXN2Q5MJ10 180 aa11.82□□□□□ -0.52
SHH-205ENST00000472308 NIT1Q86X76 327 aa11.82□□□□□ -0.52
SHH-205ENST00000472308 CYB561D1Q8N8Q1 229 aa11.82□□□□□ -0.52
SHH-205ENST00000472308 C9orf85Q96MD7 179 aa11.82□□□□□ -0.52
SHH-205ENST00000472308 UBE2L3P68036 154 aaKnown RBP11.81□□□□□ -0.52
SHH-205ENST00000472308 UBE2WQ96B02 151 aa11.81□□□□□ -0.52
SHH-205ENST00000472308 HYLS1Q96M11 299 aa11.81□□□□□ -0.52
SHH-205ENST00000472308 SH3BGRL3Q9H299 93 aa11.81□□□□□ -0.52
SHH-205ENST00000472308 A0A087WWC5 75 aa11.8□□□□□ -0.52
SHH-205ENST00000472308 PVALBP20472 110 aaPredicted RBP11.8□□□□□ -0.52
SHH-205ENST00000472308 S100A10P60903 97 aa11.8□□□□□ -0.52
SHH-205ENST00000472308 ODF1Q14990 250 aa11.8□□□□□ -0.52
SHH-205ENST00000472308 PTH2Q96A98 100 aa11.8□□□□□ -0.52
SHH-205ENST00000472308 TREM1Q9NP99 234 aa11.8□□□□□ -0.52
SHH-205ENST00000472308 IL15RAQ13261 267 aa11.79□□□□□ -0.52
SHH-205ENST00000472308 SAMD10Q9BYL1 202 aa11.79□□□□□ -0.52
SHH-205ENST00000472308 PARLQ9H300 379 aa11.79□□□□□ -0.52
SHH-205ENST00000472308 URGCP-MRPS24S4R325 110 aa11.79□□□□□ -0.52
SHH-205ENST00000472308 RNASE3P12724 160 aaKnown RBP11.78□□□□□ -0.52
SHH-205ENST00000472308 ZNF80P51504 273 aaPredicted RBP11.78□□□□□ -0.52
SHH-205ENST00000472308 RAB32Q13637 225 aa11.78□□□□□ -0.52
SHH-205ENST00000472308 C14orf177Q52M58 125 aa11.78□□□□□ -0.52
SHH-205ENST00000472308 GOLT1AQ6ZVE7 132 aa11.78□□□□□ -0.52
SHH-205ENST00000472308 TMEM75Q8N9X5 138 aa11.78□□□□□ -0.52
SHH-205ENST00000472308 C2orf50Q96LR7 162 aa11.78□□□□□ -0.52
SHH-205ENST00000472308 LINC00479Q96M42 142 aa11.78□□□□□ -0.52
SHH-205ENST00000472308 SEC11BP0C7V7 166 aa11.77□□□□□ -0.53
SHH-205ENST00000472308 NHLH2Q02577 135 aa11.77□□□□□ -0.53
SHH-205ENST00000472308 C14orf178Q8N769 122 aaPredicted RBP11.77□□□□□ -0.53
SHH-205ENST00000472308 OR2T35Q8NGX2 323 aa11.77□□□□□ -0.53
SHH-205ENST00000472308 OTORQ9NRC9 128 aa11.77□□□□□ -0.53
SHH-205ENST00000472308 TRIQKQ629K1 86 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms