RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 ZNF575Q86XF7 245 aa10.58□□□□□ -0.72
COL9A3-209ENST00000469852 C16orf74Q96GX8 76 aa10.58□□□□□ -0.72
COL9A3-209ENST00000469852 TYMSP04818 313 aa10.57□□□□□ -0.72
COL9A3-209ENST00000469852 MGST1P10620 155 aaKnown RBP10.57□□□□□ -0.72
COL9A3-209ENST00000469852 OR5I1Q13606 314 aa10.57□□□□□ -0.72
COL9A3-209ENST00000469852 FAM162BQ5T6X4 162 aa10.57□□□□□ -0.72
COL9A3-209ENST00000469852 IL17DQ8TAD2 202 aa10.57□□□□□ -0.72
COL9A3-209ENST00000469852 OCC1Q8TAD7 63 aa10.57□□□□□ -0.72
COL9A3-209ENST00000469852 SMIM7Q9BQ49 75 aa10.57□□□□□ -0.72
COL9A3-209ENST00000469852 GSN-AS1Q9NRJ2 163 aa10.57□□□□□ -0.72
COL9A3-209ENST00000469852 MDFICQ9P1T7 246 aa10.57□□□□□ -0.72
COL9A3-209ENST00000469852 M0R036 132 aa10.56□□□□□ -0.72
COL9A3-209ENST00000469852 RPL19P84098 196 aaKnown RBP10.56□□□□□ -0.72
COL9A3-209ENST00000469852 FAM222AQ5U5X8 452 aa10.56□□□□□ -0.72
COL9A3-209ENST00000469852 SMDT1Q9H4I9 107 aa10.56□□□□□ -0.72
COL9A3-209ENST00000469852 CSMD3Q7Z407 3707 aa10.56□□□□□ -0.72
COL9A3-209ENST00000469852 TMSB15BA0A087X1C1 80 aa10.55□□□□□ -0.72
COL9A3-209ENST00000469852 IGHV3-16A0A0C4DH30 117 aa10.55□□□□□ -0.72
COL9A3-209ENST00000469852 TMEM189A5PLL7 270 aa10.55□□□□□ -0.72
COL9A3-209ENST00000469852 ZNF727A8MUV8 499 aa10.55□□□□□ -0.72
COL9A3-209ENST00000469852 KRBOX1C9JBD0 128 aa10.55□□□□□ -0.72
COL9A3-209ENST00000469852 ORM1P02763 201 aa10.55□□□□□ -0.72
COL9A3-209ENST00000469852 NANOS2P60321 138 aaKnown RBP10.55□□□□□ -0.72
COL9A3-209ENST00000469852 ZNF493Q6ZR52 646 aa10.55□□□□□ -0.72
COL9A3-209ENST00000469852 COMMD7Q86VX2 200 aa10.55□□□□□ -0.72
COL9A3-209ENST00000469852 SMIM12Q96EX1 92 aa10.55□□□□□ -0.72
COL9A3-209ENST00000469852 WWC2-AS2Q96NR7 200 aa10.55□□□□□ -0.72
COL9A3-209ENST00000469852 SDF2L1Q9HCN8 221 aa10.55□□□□□ -0.72
COL9A3-209ENST00000469852 NOP10Q9NPE3 64 aaKnown RBP10.55□□□□□ -0.72
COL9A3-209ENST00000469852 DKK2Q9UBU2 259 aa10.55□□□□□ -0.72
COL9A3-209ENST00000469852 STARD9Q9P2P6 4700 aa10.55□□□□□ -0.72
COL9A3-209ENST00000469852 GRIFINA4D1Z8 144 aa10.54□□□□□ -0.72
COL9A3-209ENST00000469852 LINC00862A6NCI5 91 aa10.54□□□□□ -0.72
COL9A3-209ENST00000469852 C19orf71A6NCJ1 209 aa10.54□□□□□ -0.72
COL9A3-209ENST00000469852 B4DEV8 164 aa10.54□□□□□ -0.72
COL9A3-209ENST00000469852 TCL1AP56279 114 aa10.54□□□□□ -0.72
COL9A3-209ENST00000469852 LINC01559Q495D7 138 aa10.54□□□□□ -0.72
COL9A3-209ENST00000469852 IBA57Q5T440 356 aaKnown RBP10.54□□□□□ -0.72
COL9A3-209ENST00000469852 KCNS1Q96KK3 526 aa10.54□□□□□ -0.72
COL9A3-209ENST00000469852 TRGV11A0A075B6L2 103 aa10.53□□□□□ -0.72
COL9A3-209ENST00000469852 SFTA3P0C7M3 94 aa10.53□□□□□ -0.72
COL9A3-209ENST00000469852 ZNF415Q09FC8 603 aa10.53□□□□□ -0.72
COL9A3-209ENST00000469852 LINC01551Q86U37 167 aa10.53□□□□□ -0.72
COL9A3-209ENST00000469852 TIMM8BQ9Y5J9 83 aaPredicted RBP10.53□□□□□ -0.72
COL9A3-209ENST00000469852 DYNC2H1Q8NCM8 4307 aaKnown RBP10.53□□□□□ -0.72
COL9A3-209ENST00000469852 CXorf65A6NEN9 183 aa10.52□□□□□ -0.73
COL9A3-209ENST00000469852 SNURFLB1AK76 121 aa10.52□□□□□ -0.73
COL9A3-209ENST00000469852 SPART-AS1P0CW21 52 aa10.52□□□□□ -0.73
COL9A3-209ENST00000469852 RNASE3P12724 160 aaKnown RBP10.52□□□□□ -0.73
COL9A3-209ENST00000469852 C12orf74Q32Q52 190 aa10.52□□□□□ -0.73
COL9A3-209ENST00000469852 C11orf45Q8TAV5 145 aa10.52□□□□□ -0.73
COL9A3-209ENST00000469852 RNASE7Q9H1E1 156 aaKnown RBP10.52□□□□□ -0.73
COL9A3-209ENST00000469852 MUC4Q99102 2169 aa10.52□□□□□ -0.73
COL9A3-209ENST00000469852 RPL23P62829 140 aaKnown RBP10.51□□□□□ -0.73
COL9A3-209ENST00000469852 DAZ2Q13117 558 aaKnown RBP10.51□□□□□ -0.73
COL9A3-209ENST00000469852 FAM74A3Q4VXF1 159 aa10.51□□□□□ -0.73
COL9A3-209ENST00000469852 SOHLH1Q5JUK2 328 aa10.51□□□□□ -0.73
COL9A3-209ENST00000469852 Q6ZTC4 211 aa10.51□□□□□ -0.73
COL9A3-209ENST00000469852 Q6ZTI0 123 aa10.51□□□□□ -0.73
COL9A3-209ENST00000469852 NUDT10Q8NFP7 164 aa10.51□□□□□ -0.73
COL9A3-209ENST00000469852 NUDT11Q96G61 164 aa10.51□□□□□ -0.73
COL9A3-209ENST00000469852 C9orf85Q96MD7 179 aa10.51□□□□□ -0.73
COL9A3-209ENST00000469852 MRPL16Q9NX20 251 aaKnown RBP10.51□□□□□ -0.73
COL9A3-209ENST00000469852 LY96Q9Y6Y9 160 aa10.51□□□□□ -0.73
COL9A3-209ENST00000469852 LYRM9A8MSI8 78 aa10.5□□□□□ -0.73
COL9A3-209ENST00000469852 SPINK4O60575 86 aa10.5□□□□□ -0.73
COL9A3-209ENST00000469852 DEFB130BP0DP73 79 aa10.5□□□□□ -0.73
COL9A3-209ENST00000469852 DEFB130AP0DP74 79 aa10.5□□□□□ -0.73
COL9A3-209ENST00000469852 GZMBP10144 247 aa10.5□□□□□ -0.73
COL9A3-209ENST00000469852 ADCYAP1P18509 176 aa10.5□□□□□ -0.73
COL9A3-209ENST00000469852 TMEM241Q24JQ0 296 aa10.5□□□□□ -0.73
COL9A3-209ENST00000469852 UQCC3Q6UW78 93 aa10.5□□□□□ -0.73
COL9A3-209ENST00000469852 LINC00612Q8N6U2 182 aa10.5□□□□□ -0.73
COL9A3-209ENST00000469852 NAT8Q9UHE5 227 aa10.5□□□□□ -0.73
COL9A3-209ENST00000469852 GAGE12BA1L429 117 aa10.49□□□□□ -0.73
COL9A3-209ENST00000469852 H3BVH4 76 aa10.49□□□□□ -0.73
COL9A3-209ENST00000469852 GAGE7O76087 117 aa10.49□□□□□ -0.73
COL9A3-209ENST00000469852 GAGE12FP0CL80 117 aa10.49□□□□□ -0.73
COL9A3-209ENST00000469852 GAGE12GP0CL81 117 aa10.49□□□□□ -0.73
COL9A3-209ENST00000469852 GAGE12IP0CL82 117 aa10.49□□□□□ -0.73
COL9A3-209ENST00000469852 ASIPP42127 132 aa10.49□□□□□ -0.73
COL9A3-209ENST00000469852 DNLZQ5SXM8 178 aa10.49□□□□□ -0.73
COL9A3-209ENST00000469852 OR2D3Q8NGH3 330 aa10.49□□□□□ -0.73
COL9A3-209ENST00000469852 DAZAP1Q96EP5 407 aaKnown RBP10.49□□□□□ -0.73
COL9A3-209ENST00000469852 TRGV1A0A0A0MS02 117 aa10.48□□□□□ -0.73
COL9A3-209ENST00000469852 P01737 135 aa10.48□□□□□ -0.73
COL9A3-209ENST00000469852 ARMS2P0C7Q2 107 aa10.48□□□□□ -0.73
COL9A3-209ENST00000469852 DAD1P61803 113 aa10.48□□□□□ -0.73
COL9A3-209ENST00000469852 ADIRFQ15847 76 aa10.48□□□□□ -0.73
COL9A3-209ENST00000469852 ISOC2Q96AB3 205 aa10.48□□□□□ -0.73
COL9A3-209ENST00000469852 BIN3Q9NQY0 253 aa10.48□□□□□ -0.73
COL9A3-209ENST00000469852 PLECQ15149 4684 aaKnown RBP10.47□□□□□ -0.73
COL9A3-209ENST00000469852 TEX48A0A1B0GUV7 120 aa10.47□□□□□ -0.73
COL9A3-209ENST00000469852 TMEM218A2RU14 115 aa10.47□□□□□ -0.73
COL9A3-209ENST00000469852 S100A4P26447 101 aaKnown RBP10.47□□□□□ -0.73
COL9A3-209ENST00000469852 FAM231DQ6ZW35 169 aa10.47□□□□□ -0.73
COL9A3-209ENST00000469852 MUC7Q8TAX7 377 aa10.47□□□□□ -0.73
COL9A3-209ENST00000469852 SPXQ9BT56 116 aa10.47□□□□□ -0.73
COL9A3-209ENST00000469852 RPP21Q9H633 154 aaKnown RBP10.47□□□□□ -0.73
COL9A3-209ENST00000469852 M0R2P5 195 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms