RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 DNAJC30Q96LL9 226 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 ZNF688P0C7X2 276 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 BUB3O43684 328 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 LINC00205P59089 165 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 C11orf86A6NJI1 115 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 CD7P09564 240 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 CNTFRP26992 372 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 KLK15Q9H2R5 256 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 PIK3CD-AS1Q5SR53 167 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 K7EMT4 169 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 RNASE4P34096 147 aaKnown RBP5.51□□□□□ -1.53
SYNE1-216ENST00000461872 BEX4Q9NWD9 120 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-216ENST00000461872 IGKV3OR2-268A0A0C4DH90 116 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 E7EQL1 145 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 WFDC3Q8IUB2 231 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 CARD19Q96LW7 228 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 EGR2P11161 476 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-216ENST00000461872 Q8N976 141 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 SPXQ9BT56 116 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 GTSF1LQ9H1H1 148 aa5.51□□□□□ -1.53
SYNE1-216ENST00000461872 COLQQ9Y215 455 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-216ENST00000461872 J3QQQ9 107 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 BRI3O95415 125 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 MEIG1Q5JSS6 88 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 H3BMM0 161 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 ZNF415Q09FC8 603 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 OR13C6PQ8NH95 151 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 UBE2WQ96B02 151 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 PRADC1Q9BSG0 188 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 ANKRD11Q6UB99 2663 aaPredicted RBP5.5□□□□□ -1.53
SYNE1-216ENST00000461872 CTSGP08311 255 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 AZU1P20160 251 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 SPATA25Q9BR10 227 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 LINC01546A6NGU7 62 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 JMJD8Q96S16 334 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 IGHV3OR16-12A0A075B7B8 117 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 CD28P10747 220 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 MLANAQ16655 118 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 PF4P02776 101 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 UFSP1Q6NVU6 142 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 J3QLI3 93 aa5.5□□□□□ -1.53
SYNE1-216ENST00000461872 TRAV2A0A0B4J234 112 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 RNF183Q96D59 192 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 TFF1P04155 84 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 C2orf82Q6UX34 121 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 IGLV2-11P01706 119 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 Q8TAT8 98 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 TP53TG1Q9Y2A0 90 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 TSSC4Q9Y5U2 329 aaPredicted RBP5.49□□□□□ -1.53
SYNE1-216ENST00000461872 ODF3BA8MYP8 253 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 LYPD2Q6UXB3 125 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 AGRNO00468 2067 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 ZNHIT1O43257 154 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 FAM74A4Q5TZK3 123 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 C8orf49Q96NF6 230 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 MAJINQ3KP22 176 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 INSP01308 110 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 TMEM86BQ8N661 226 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 AGPAT4-IT1Q9H0P7 198 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 ZNF580Q9UK33 172 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 ZFHX2Q9C0A1 2572 aaPredicted RBP5.49□□□□□ -1.53
SYNE1-216ENST00000461872 A0A0B4J2C4 111 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 TEX48A0A1B0GUV7 120 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 GAGE12JA6NER3 117 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 GAGE7O76087 117 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 GAGE12FP0CL80 117 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 GAGE12GP0CL81 117 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 GAGE12IP0CL82 117 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 SRD5A1P18405 259 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 GAGE4Q13068 117 aa5.49□□□□□ -1.53
SYNE1-216ENST00000461872 LEPROTO15243 131 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 C14orf178Q8N769 122 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-216ENST00000461872 CFC1BP0CG36 223 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 CFC1P0CG37 223 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 FOXC1Q12948 553 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 HERV-K104P63124 156 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 GAGE5Q13069 117 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 GAGE6Q13070 117 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 B4DSR2 109 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 SLC25A20O43772 301 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 CTSZQ9UBR2 303 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 DKK2Q9UBU2 259 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 HERVK_113P63121 156 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 FOXI1Q12951 378 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 IMUPQ9GZP8 106 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 TMEM126AQ9H061 195 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 ZMAT4Q9H898 229 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 IGHV7-4-1A0A0J9YVY3 117 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 GDF5OSQ5U4N7 250 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 RHPN1-AS1Q9BWJ2 59 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 FAM240AA0A1B0GVK7 77 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 P0DMU3 169 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 FAM231AP0DMU4 169 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 FAM231CP0DMU5 169 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 C2orf91Q6ZV80 131 aa5.48□□□□□ -1.53
SYNE1-216ENST00000461872 PCP2Q8IVA1 136 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 IGHV4OR15-8A0A075B7B6 117 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 A0A087WW49 117 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 C1orf159Q96HA4 380 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 A0A0J9YX75 114 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms