RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 ZNF138P52744 262 aa12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 NANOS2P60321 138 aaKnown RBP12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 ERCC8Q13216 396 aa12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 TMEM183BQ1AE95 376 aa12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 COX19Q49B96 90 aa12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 LINC00518Q8N0U6 118 aa12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 VGLL1Q99990 258 aa12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 AGPAT4-IT1Q9H0P7 198 aa12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 PSG8Q9UQ74 426 aa12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 LENEPQ9Y5L5 61 aa12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 ALMS1Q8TCU4 4167 aa12.37□□□□□ -0.43
PRPF40A-204ENST00000450303 GCGP01275 180 aa12.36□□□□□ -0.43
PRPF40A-204ENST00000450303 IGKV3-20P01619 116 aa12.36□□□□□ -0.43
PRPF40A-204ENST00000450303 TRGC1P0CF51 173 aa12.36□□□□□ -0.43
PRPF40A-204ENST00000450303 PRB4P10163 310 aaPredicted RBP12.36□□□□□ -0.43
PRPF40A-204ENST00000450303 S100A2P29034 98 aa12.36□□□□□ -0.43
PRPF40A-204ENST00000450303 LEPP41159 167 aa12.36□□□□□ -0.43
PRPF40A-204ENST00000450303 SAPCD1Q5SSQ6 148 aa12.36□□□□□ -0.43
PRPF40A-204ENST00000450303 MORN3Q6PF18 240 aaPredicted RBP12.36□□□□□ -0.43
PRPF40A-204ENST00000450303 PHLDA1Q8WV24 401 aaPredicted RBP12.36□□□□□ -0.43
PRPF40A-204ENST00000450303 ODF3Q96PU9 254 aa12.36□□□□□ -0.43
PRPF40A-204ENST00000450303 ZNF492Q9P255 531 aa12.36□□□□□ -0.43
PRPF40A-204ENST00000450303 KLF12Q9Y4X4 402 aa12.36□□□□□ -0.43
PRPF40A-204ENST00000450303 TRAV34A0A0B4J273 112 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 TRBV7-9A0A0J9YWB2 115 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 TRBV6-1A0A0K0K1D8 114 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 A8MTW9 85 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 HIST1H2BKO60814 126 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 LY6G6CO95867 125 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 AMBPP02760 352 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 HIST1H2BJP06899 126 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 HIST1H2BOP23527 126 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 HIST1H2BBP33778 126 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 HIST1H2BDP58876 126 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 HIST1H2BCP62807 126 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 HIST2H2BEQ16778 126 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 PRNTQ86SH4 94 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 BAGE2Q86Y30 109 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 C11orf45Q8TAV5 145 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 FRZBQ92765 325 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 HIST1H2BHQ93079 126 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 IGF2BP2-AS1Q96M15 143 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 HIST1H2BNQ99877 126 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 HIST1H2BMQ99879 126 aa12.35□□□□□ -0.43
PRPF40A-204ENST00000450303 TRAV8-1A0A0A6YYK1 113 aa12.34□□□□□ -0.43
PRPF40A-204ENST00000450303 K7EN84 100 aa12.34□□□□□ -0.43
PRPF40A-204ENST00000450303 SMIM6P0DI80 62 aa12.34□□□□□ -0.43
PRPF40A-204ENST00000450303 LINC00476Q8WZB0 136 aa12.34□□□□□ -0.43
PRPF40A-204ENST00000450303 SGK494Q96LW2 274 aa12.34□□□□□ -0.43
PRPF40A-204ENST00000450303 LINC00479Q96M42 142 aa12.34□□□□□ -0.43
PRPF40A-204ENST00000450303 C11orf68Q9H3H3 251 aaKnown RBP12.34□□□□□ -0.43
PRPF40A-204ENST00000450303 ZFP30Q9Y2G7 519 aa12.34□□□□□ -0.43
PRPF40A-204ENST00000450303 KLK5Q9Y337 293 aaPredicted RBP12.34□□□□□ -0.43
PRPF40A-204ENST00000450303 CT45A10P0DMU9 189 aa12.33□□□□□ -0.44
PRPF40A-204ENST00000450303 IBA57Q5T440 356 aaKnown RBP12.33□□□□□ -0.44
PRPF40A-204ENST00000450303 C1QTNF4Q9BXJ3 329 aa12.33□□□□□ -0.44
PRPF40A-204ENST00000450303 TRAPPC1Q9Y5R8 145 aa12.33□□□□□ -0.44
PRPF40A-204ENST00000450303 IGHV4-28A0A0C4DH34 117 aa12.32□□□□□ -0.44
PRPF40A-204ENST00000450303 GATCO43716 136 aaKnown RBP12.32□□□□□ -0.44
PRPF40A-204ENST00000450303 IGLV2-11P01706 119 aa12.32□□□□□ -0.44
PRPF40A-204ENST00000450303 RBMY1A1P0DJD3 496 aaKnown RBP12.32□□□□□ -0.44
PRPF40A-204ENST00000450303 RBMY1CP0DJD4 496 aa12.32□□□□□ -0.44
PRPF40A-204ENST00000450303 CDKN1BP46527 198 aa12.32□□□□□ -0.44
PRPF40A-204ENST00000450303 OR5I1Q13606 314 aa12.32□□□□□ -0.44
PRPF40A-204ENST00000450303 RBMY1FQ15415 496 aaKnown RBP12.32□□□□□ -0.44
PRPF40A-204ENST00000450303 FAM231DQ6ZW35 169 aa12.32□□□□□ -0.44
PRPF40A-204ENST00000450303 Q86TA4 180 aa12.32□□□□□ -0.44
PRPF40A-204ENST00000450303 Q8NAQ8 132 aa12.32□□□□□ -0.44
PRPF40A-204ENST00000450303 Q8TAT8 98 aa12.32□□□□□ -0.44
PRPF40A-204ENST00000450303 ZNF705GA8MUZ8 300 aaPredicted RBP12.31□□□□□ -0.44
PRPF40A-204ENST00000450303 WDR73Q6P4I2 378 aa12.31□□□□□ -0.44
PRPF40A-204ENST00000450303 AMTNQ6UX39 209 aa12.31□□□□□ -0.44
PRPF40A-204ENST00000450303 CSNK1G2-AS1Q8NCQ2 148 aa12.31□□□□□ -0.44
PRPF40A-204ENST00000450303 C12orf57Q99622 126 aa12.31□□□□□ -0.44
PRPF40A-204ENST00000450303 XCL2Q9UBD3 114 aa12.31□□□□□ -0.44
PRPF40A-204ENST00000450303 V9GYV3 84 aa12.31□□□□□ -0.44
PRPF40A-204ENST00000450303 X6R8D5 127 aa12.31□□□□□ -0.44
PRPF40A-204ENST00000450303 LTAP01374 205 aa12.3□□□□□ -0.44
PRPF40A-204ENST00000450303 GPX1P07203 203 aa12.3□□□□□ -0.44
PRPF40A-204ENST00000450303 CRISP2P16562 243 aa12.3□□□□□ -0.44
PRPF40A-204ENST00000450303 FXYD7P58549 80 aa12.3□□□□□ -0.44
PRPF40A-204ENST00000450303 SPINK13Q1W4C9 94 aa12.3□□□□□ -0.44
PRPF40A-204ENST00000450303 FAM19A4Q96LR4 140 aa12.3□□□□□ -0.44
PRPF40A-204ENST00000450303 IGLV2-8P01709 118 aa12.29□□□□□ -0.44
PRPF40A-204ENST00000450303 MT-ND6P03923 174 aa12.29□□□□□ -0.44
PRPF40A-204ENST00000450303 TMEM183AQ8IXX5 376 aa12.29□□□□□ -0.44
PRPF40A-204ENST00000450303 XKRY2A2RUG3 117 aa12.28□□□□□ -0.44
PRPF40A-204ENST00000450303 M0R2Z0 102 aa12.28□□□□□ -0.44
PRPF40A-204ENST00000450303 PHOX2AO14813 284 aa12.28□□□□□ -0.44
PRPF40A-204ENST00000450303 MIFP14174 115 aa12.28□□□□□ -0.44
PRPF40A-204ENST00000450303 DAZAP1Q96EP5 407 aaKnown RBP12.28□□□□□ -0.44
PRPF40A-204ENST00000450303 RNASE7Q9H1E1 156 aaKnown RBP12.28□□□□□ -0.44
PRPF40A-204ENST00000450303 EPPK1P58107 5090 aaKnown RBP12.28□□□□□ -0.44
PRPF40A-204ENST00000450303 C7orf71A4D174 169 aa12.27□□□□□ -0.45
PRPF40A-204ENST00000450303 KLLNB2CW77 178 aa12.27□□□□□ -0.45
PRPF40A-204ENST00000450303 J3KRW8 73 aa12.27□□□□□ -0.45
PRPF40A-204ENST00000450303 INSP01308 110 aa12.27□□□□□ -0.45
PRPF40A-204ENST00000450303 COA6Q5JTJ3 125 aaKnown RBP12.27□□□□□ -0.45
PRPF40A-204ENST00000450303 HIST3H2BBQ8N257 126 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 119.7 ms