RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 UFM1P61960 85 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 ESRGQ1W209 222 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 ODF3Q96PU9 254 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 SDHCQ99643 169 aaPredicted RBP1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 LINC00467Q9BRT7 94 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 SIKE1Q9BRV8 207 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 PLCXD1Q9NUJ7 323 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 POLR3KQ9Y2Y1 108 aaPredicted RBP1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 LINC00588Q9Y4M8 146 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 VWA8A3KMH1 1905 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 IGHV3OR16-9A0A0B4J2B5 98 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 COX7A2LO14548 114 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 SLC31A2O15432 143 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 ATP6V1G2O95670 118 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 CD34P28906 385 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 HERV-K104P63124 156 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 PFN4Q8NHR9 129 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 C12orf57Q99622 126 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 SAMD10Q9BYL1 202 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 BIN3Q9NQY0 253 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 HECTD4Q9Y4D8 3996 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 TACC2O95359 2948 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 PRKDCP78527 4128 aaKnown RBP1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 A0A087WYN8 130 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 TCRBV9S1A1TA0A576 114 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 FAM90A22PA8MWA6 464 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 KRTAP29-1A8MX34 341 aaPredicted RBP1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF736B4DX44 427 aaPredicted RBP1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 H3BRM9 83 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 UCHL1P09936 223 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 LIMS3P0CW19 117 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 LIMS4P0CW20 117 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 SAA2P0DJI9 122 aaPredicted RBP1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 FHITP49789 147 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 LINC00158P58513 81 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 UBE2L3P68036 154 aaKnown RBP1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 FAM3AP98173 230 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF146Q15072 292 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 ISCA2Q86U28 154 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 OR8B4Q96RC9 309 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 HSPB9Q9BQS6 159 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 DERL1Q9BUN8 251 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 PAM16Q9Y3D7 125 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 COL12A1Q99715 3063 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 IGHV7-81A0A0B4J1V7 117 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 GAGE12HA6NDE8 117 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF727A8MUV8 499 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 SAA1P0DJI8 122 aaPredicted RBP1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 NFYAP23511 347 aaPredicted RBP1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 PSMB8P28062 276 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 SPAG11BQ08648 103 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 OR51S1Q8NGJ8 323 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 LGALS14Q8TCE9 139 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 LINC00477Q96M19 166 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 C20orf144Q9BQM9 153 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 VAPAQ9P0L0 249 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 EXPH5Q8NEV8 1989 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 MUC22E2RYF6 1773 aaPredicted RBP1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 IGHV1-58A0A0C4DH39 117 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 C7orf71A4D174 169 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 FAM90A26D6RGX4 464 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 E7EUB6 86 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 F2Z2F3 143 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 RPS25P62851 125 aaKnown RBP1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 C1orf220Q5T0J3 134 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 ZC2HC1BQ5TFG8 222 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 DLEU7Q6UYE1 221 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 TBC1D26Q86UD7 250 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 C4orf32Q8N8J7 132 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 PRR26Q8N8Z3 221 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 SLC24A4Q8NFF2 622 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 CANT1Q8WVQ1 401 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 LINC00167Q96N53 147 aa1.9□□□□□ -2.1
CCDC88A-205ENST00000426576 M0QXV9 152 aa1.9□□□□□ -2.11
CCDC88A-205ENST00000426576 HSPE1P61604 102 aaKnown RBP1.9□□□□□ -2.11
CCDC88A-205ENST00000426576 OR10G7Q8NGN6 311 aa1.9□□□□□ -2.11
CCDC88A-205ENST00000426576 ASB13Q8WXK3 278 aa1.9□□□□□ -2.11
CCDC88A-205ENST00000426576 AP3S1Q92572 193 aa1.9□□□□□ -2.11
CCDC88A-205ENST00000426576 NABP2Q9BQ15 211 aa1.9□□□□□ -2.11
CCDC88A-205ENST00000426576 PTPRBP23467 1997 aa1.9□□□□□ -2.11
CCDC88A-205ENST00000426576 H0Y8G0 127 aa1.9□□□□□ -2.11
CCDC88A-205ENST00000426576 SMIM10L1P0DMW3 83 aa1.9□□□□□ -2.11
CCDC88A-205ENST00000426576 BSXQ3C1V8 233 aa1.9□□□□□ -2.11
CCDC88A-205ENST00000426576 Q8N814 137 aa1.9□□□□□ -2.11
CCDC88A-205ENST00000426576 SMIM10Q96HG1 83 aa1.9□□□□□ -2.11
CCDC88A-205ENST00000426576 KCNE3Q9Y6H6 103 aa1.9□□□□□ -2.11
CCDC88A-205ENST00000426576 M0R2P5 195 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 BANF1O75531 89 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 ZNF705AQ6ZN79 300 aaPredicted RBP1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 FRAS1Q86XX4 4008 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 A0A0B4J2E0 115 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 A0A1B0GX12 115 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 TRDCB7Z8K6 153 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 GEMIN2O14893 280 aaKnown RBP1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 TSHBP01222 138 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 SNAI3Q3KNW1 292 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 SAPCD1Q5SSQ6 148 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 C10orf55Q5SWW7 151 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 Q6ZNX1 250 aa1.89□□□□□ -2.11
CCDC88A-205ENST00000426576 SMIM19Q96E16 107 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms