RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 LCNL1Q6ZST4 164 aa7.48□□□□□ -1.21
CD44-206ENST00000415148 C9orf139Q6ZV77 190 aa7.48□□□□□ -1.21
CD44-206ENST00000415148 FAM223AQ8IWN6 122 aa7.48□□□□□ -1.21
CD44-206ENST00000415148 LINC00477Q96M19 166 aa7.48□□□□□ -1.21
CD44-206ENST00000415148 MRPL35Q9NZE8 188 aaKnown RBP7.48□□□□□ -1.21
CD44-206ENST00000415148 ANKHD1Q8IWZ3 2542 aaKnown RBP7.48□□□□□ -1.21
CD44-206ENST00000415148 PLNP26678 52 aa7.48□□□□□ -1.21
CD44-206ENST00000415148 CRIP2P52943 208 aaPredicted RBP7.48□□□□□ -1.21
CD44-206ENST00000415148 SPANXN1Q5VSR9 72 aa7.48□□□□□ -1.21
CD44-206ENST00000415148 AMTNQ6UX39 209 aa7.48□□□□□ -1.21
CD44-206ENST00000415148 CEND1Q8N111 149 aa7.48□□□□□ -1.21
CD44-206ENST00000415148 C5orf56Q8N8D9 126 aa7.48□□□□□ -1.21
CD44-206ENST00000415148 G3V318 75 aa7.47□□□□□ -1.21
CD44-206ENST00000415148 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.47□□□□□ -1.21
CD44-206ENST00000415148 GTSF1LQ9H1H1 148 aa7.47□□□□□ -1.21
CD44-206ENST00000415148 CEP295Q9C0D2 2601 aa7.47□□□□□ -1.21
CD44-206ENST00000415148 NPFFO15130 113 aa7.47□□□□□ -1.21
CD44-206ENST00000415148 SLC25A16P16260 332 aa7.47□□□□□ -1.21
CD44-206ENST00000415148 C19orf54Q5BKX5 351 aa7.47□□□□□ -1.21
CD44-206ENST00000415148 SH2D6Q7Z4S9 175 aa7.47□□□□□ -1.21
CD44-206ENST00000415148 GLMPQ8WWB7 406 aa7.47□□□□□ -1.21
CD44-206ENST00000415148 ITLN2Q8WWU7 325 aaPredicted RBP7.47□□□□□ -1.21
CD44-206ENST00000415148 C16orf92Q96LL3 132 aa7.47□□□□□ -1.21
CD44-206ENST00000415148 C20orf78Q9BR46 151 aa7.47□□□□□ -1.21
CD44-206ENST00000415148 SPTBN4Q9H254 2564 aa7.46□□□□□ -1.21
CD44-206ENST00000415148 LINC01548A6NM66 108 aa7.46□□□□□ -1.21
CD44-206ENST00000415148 LINC01619G3V211 115 aa7.46□□□□□ -1.21
CD44-206ENST00000415148 OVOL1O14753 267 aa7.46□□□□□ -1.21
CD44-206ENST00000415148 BRI3O95415 125 aa7.46□□□□□ -1.21
CD44-206ENST00000415148 MED14OSP0DP75 135 aa7.46□□□□□ -1.21
CD44-206ENST00000415148 LMO4P61968 165 aa7.46□□□□□ -1.21
CD44-206ENST00000415148 ORMDL2Q53FV1 153 aa7.46□□□□□ -1.21
CD44-206ENST00000415148 IGLL5B9A064 214 aa7.46□□□□□ -1.22
CD44-206ENST00000415148 H3BMG7 143 aa7.46□□□□□ -1.22
CD44-206ENST00000415148 H7C1H1 209 aa7.46□□□□□ -1.22
CD44-206ENST00000415148 INSL3P51460 131 aa7.46□□□□□ -1.22
CD44-206ENST00000415148 SMIM2Q9BVW6 85 aa7.46□□□□□ -1.22
CD44-206ENST00000415148 UFC1Q9Y3C8 167 aa7.46□□□□□ -1.22
CD44-206ENST00000415148 TRAV41A0A0B4J266 112 aa7.45□□□□□ -1.22
CD44-206ENST00000415148 TRAV21A0A0B4J279 112 aa7.45□□□□□ -1.22
CD44-206ENST00000415148 IGF1P05019 195 aa7.45□□□□□ -1.22
CD44-206ENST00000415148 AZU1P20160 251 aa7.45□□□□□ -1.22
CD44-206ENST00000415148 MOB4Q9Y3A3 225 aa7.45□□□□□ -1.22
CD44-206ENST00000415148 TRBV7-9A0A0J9YWB2 115 aa7.45□□□□□ -1.22
CD44-206ENST00000415148 E9PLD3 99 aa7.45□□□□□ -1.22
CD44-206ENST00000415148 F8VRH5 84 aa7.45□□□□□ -1.22
CD44-206ENST00000415148 M0R381 172 aa7.45□□□□□ -1.22
CD44-206ENST00000415148 PPP1R17O96001 155 aa7.45□□□□□ -1.22
CD44-206ENST00000415148 PRR9Q5T870 116 aa7.45□□□□□ -1.22
CD44-206ENST00000415148 TOMM6Q96B49 74 aa7.45□□□□□ -1.22
CD44-206ENST00000415148 SPANXB1Q9NS25 103 aaPredicted RBP7.45□□□□□ -1.22
CD44-206ENST00000415148 TSSC4Q9Y5U2 329 aaPredicted RBP7.45□□□□□ -1.22
CD44-206ENST00000415148 NDUFA4O00483 81 aa7.44□□□□□ -1.22
CD44-206ENST00000415148 DEFB1P60022 68 aa7.44□□□□□ -1.22
CD44-206ENST00000415148 SMAGPQ0VAQ4 97 aa7.44□□□□□ -1.22
CD44-206ENST00000415148 OR10J6PQ8NGY7 276 aa7.44□□□□□ -1.22
CD44-206ENST00000415148 DEFB104AQ8WTQ1 72 aa7.44□□□□□ -1.22
CD44-206ENST00000415148 KLK15Q9H2R5 256 aa7.44□□□□□ -1.22
CD44-206ENST00000415148 DPH3P1Q9H4G8 78 aa7.44□□□□□ -1.22
CD44-206ENST00000415148 H3BUA1 57 aa7.44□□□□□ -1.22
CD44-206ENST00000415148 H3BVH4 76 aa7.44□□□□□ -1.22
CD44-206ENST00000415148 J3KRW8 73 aa7.44□□□□□ -1.22
CD44-206ENST00000415148 ARL3P36405 182 aa7.44□□□□□ -1.22
CD44-206ENST00000415148 SUMO2P61956 95 aaKnown RBP7.44□□□□□ -1.22
CD44-206ENST00000415148 C12orf74Q32Q52 190 aa7.44□□□□□ -1.22
CD44-206ENST00000415148 SAMD13Q5VXD3 122 aa7.44□□□□□ -1.22
CD44-206ENST00000415148 A0A1W2PPR1 153 aa7.43□□□□□ -1.22
CD44-206ENST00000415148 LINC01549A6NIU2 74 aa7.43□□□□□ -1.22
CD44-206ENST00000415148 ETDBQ3ZM63 59 aa7.43□□□□□ -1.22
CD44-206ENST00000415148 APRG1Q8IVJ8 170 aa7.43□□□□□ -1.22
CD44-206ENST00000415148 ZFAND2AQ8N6M9 145 aa7.43□□□□□ -1.22
CD44-206ENST00000415148 C20orf173Q96LM9 149 aa7.43□□□□□ -1.22
CD44-206ENST00000415148 FAM19A4Q96LR4 140 aa7.43□□□□□ -1.22
CD44-206ENST00000415148 AKAP6Q13023 2319 aa7.43□□□□□ -1.22
CD44-206ENST00000415148 F8W1H4 67 aa7.42□□□□□ -1.22
CD44-206ENST00000415148 SOCS3O14543 225 aa7.42□□□□□ -1.22
CD44-206ENST00000415148 ASIPP42127 132 aa7.42□□□□□ -1.22
CD44-206ENST00000415148 CLEC2AQ6UVW9 174 aa7.42□□□□□ -1.22
CD44-206ENST00000415148 FOXI2Q6ZQN5 318 aa7.42□□□□□ -1.22
CD44-206ENST00000415148 POM121L12Q8N7R1 296 aa7.42□□□□□ -1.22
CD44-206ENST00000415148 NEXN-AS1Q8NBZ9 246 aa7.42□□□□□ -1.22
CD44-206ENST00000415148 USMG5Q96IX5 58 aa7.42□□□□□ -1.22
CD44-206ENST00000415148 SCGB3A1Q96QR1 104 aa7.42□□□□□ -1.22
CD44-206ENST00000415148 SPAG8Q99932 426 aaPredicted RBP7.42□□□□□ -1.22
CD44-206ENST00000415148 CHTOPQ9Y3Y2 248 aaKnown RBP7.42□□□□□ -1.22
CD44-206ENST00000415148 SPTBN1Q01082 2364 aaKnown RBP7.42□□□□□ -1.22
CD44-206ENST00000415148 COL12A1Q99715 3063 aa7.42□□□□□ -1.22
CD44-206ENST00000415148 RASL10AQ92737 203 aa7.42□□□□□ -1.22
CD44-206ENST00000415148 ZNF479Q96JC4 524 aa7.42□□□□□ -1.22
CD44-206ENST00000415148 BPESC1Q9GZL8 116 aa7.42□□□□□ -1.22
CD44-206ENST00000415148 UBTD1Q9HAC8 227 aa7.42□□□□□ -1.22
CD44-206ENST00000415148 SPTA1P02549 2419 aa7.41□□□□□ -1.22
CD44-206ENST00000415148 TRBV7-3A0A075B6L6 115 aa7.41□□□□□ -1.22
CD44-206ENST00000415148 S100A4P26447 101 aaKnown RBP7.41□□□□□ -1.22
CD44-206ENST00000415148 GPHB5Q86YW7 130 aa7.41□□□□□ -1.22
CD44-206ENST00000415148 PRO0461Q9UI25 63 aa7.41□□□□□ -1.22
CD44-206ENST00000415148 PHLDA3Q9Y5J5 127 aa7.41□□□□□ -1.22
CD44-206ENST00000415148 ATRXP46100 2492 aa7.41□□□□□ -1.22
CD44-206ENST00000415148 MYMXA0A1B0GTQ4 84 aa7.41□□□□□ -1.22
CD44-206ENST00000415148 A0A1B0GWB2 263 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms