RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 PRSS46E5RG02 174 aa7.96□□□□□ -1.14
COL6A3-205ENST00000392004 LY6LH3BQJ8 138 aa7.96□□□□□ -1.14
COL6A3-205ENST00000392004 SPRY2O43597 315 aa7.96□□□□□ -1.14
COL6A3-205ENST00000392004 AMMECR1LQ6DCA0 310 aa7.96□□□□□ -1.14
COL6A3-205ENST00000392004 NUP35Q8NFH5 326 aa7.96□□□□□ -1.14
COL6A3-205ENST00000392004 MAP1LC3CQ9BXW4 147 aa7.96□□□□□ -1.14
COL6A3-205ENST00000392004 IGKV3OR2-268A0A0C4DH90 116 aa7.96□□□□□ -1.14
COL6A3-205ENST00000392004 DEFB4AO15263 64 aa7.96□□□□□ -1.14
COL6A3-205ENST00000392004 PGLYRP4Q96LB8 373 aa7.96□□□□□ -1.14
COL6A3-205ENST00000392004 APOHP02749 345 aaPredicted RBP7.95□□□□□ -1.14
COL6A3-205ENST00000392004 WIPF2Q8TF74 440 aaPredicted RBP7.95□□□□□ -1.14
COL6A3-205ENST00000392004 TET2Q6N021 2002 aaPredicted RBP7.95□□□□□ -1.14
COL6A3-205ENST00000392004 IGLV11-55A0A075B6I3 123 aa7.95□□□□□ -1.14
COL6A3-205ENST00000392004 HIGD1CA8MV81 97 aa7.95□□□□□ -1.14
COL6A3-205ENST00000392004 PEX7O00628 323 aa7.95□□□□□ -1.14
COL6A3-205ENST00000392004 NDUFA3O95167 84 aa7.95□□□□□ -1.14
COL6A3-205ENST00000392004 PPBPP02775 128 aa7.95□□□□□ -1.14
COL6A3-205ENST00000392004 FOXA3P55318 350 aaPredicted RBP7.95□□□□□ -1.14
COL6A3-205ENST00000392004 RPS20P60866 119 aaKnown RBP7.95□□□□□ -1.14
COL6A3-205ENST00000392004 FOXE3Q13461 319 aa7.95□□□□□ -1.14
COL6A3-205ENST00000392004 TWIST1Q15672 202 aa7.95□□□□□ -1.14
COL6A3-205ENST00000392004 ZNF491Q8N8L2 437 aa7.95□□□□□ -1.14
COL6A3-205ENST00000392004 FNDC10F2Z333 226 aa7.95□□□□□ -1.14
COL6A3-205ENST00000392004 KLF5Q13887 457 aaPredicted RBP7.95□□□□□ -1.14
COL6A3-205ENST00000392004 CD300EQ496F6 205 aaPredicted RBP7.95□□□□□ -1.14
COL6A3-205ENST00000392004 LINC00477Q96M19 166 aa7.95□□□□□ -1.14
COL6A3-205ENST00000392004 LINC00574Q9H8X3 128 aa7.95□□□□□ -1.14
COL6A3-205ENST00000392004 hDV102S1A0JD36 115 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 HBBP68871 147 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 MORN5Q5VZ52 161 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 IGKV1OR2-108A0A075B7D4 117 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 J3QR89 54 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 PET117Q6UWS5 81 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 OR9G4Q8NGQ1 327 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 SYS1-DBNDD2H3BUS1 97 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 TMEM61Q8N0U2 210 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 ZNF702PQ9H963 129 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 KLK9Q9UKQ9 250 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 GAGE10A6NGK3 116 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 A8MWL6 223 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 I3L2K1 104 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 GP9P14770 177 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 ATP5L2Q7Z4Y8 100 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 HSPB8Q9UJY1 196 aa7.94□□□□□ -1.14
COL6A3-205ENST00000392004 IGLV2-8P01709 118 aa7.93□□□□□ -1.14
COL6A3-205ENST00000392004 PAX2Q02962 417 aa7.93□□□□□ -1.14
COL6A3-205ENST00000392004 BVES-AS1Q5T3Y7 98 aa7.93□□□□□ -1.14
COL6A3-205ENST00000392004 FAM231DQ6ZW35 169 aa7.93□□□□□ -1.14
COL6A3-205ENST00000392004 ZNF502Q8TBZ5 544 aa7.93□□□□□ -1.14
COL6A3-205ENST00000392004 IGF2BP2-AS1Q96M15 143 aa7.93□□□□□ -1.14
COL6A3-205ENST00000392004 LOC389332A0A1B0GUA5 103 aa7.93□□□□□ -1.14
COL6A3-205ENST00000392004 C2orf70A6NJV1 201 aa7.93□□□□□ -1.14
COL6A3-205ENST00000392004 TAX1BP3O14907 124 aa7.93□□□□□ -1.14
COL6A3-205ENST00000392004 CHCHD1Q96BP2 118 aaKnown RBP7.93□□□□□ -1.14
COL6A3-205ENST00000392004 NDUFA4O00483 81 aa7.93□□□□□ -1.14
COL6A3-205ENST00000392004 OR5AL1P0C617 328 aa7.93□□□□□ -1.14
COL6A3-205ENST00000392004 RPL24P83731 157 aaKnown RBP7.93□□□□□ -1.14
COL6A3-205ENST00000392004 IGHV7-4-1A0A0J9YVY3 117 aa7.92□□□□□ -1.14
COL6A3-205ENST00000392004 FSTL3O95633 263 aa7.92□□□□□ -1.14
COL6A3-205ENST00000392004 DEFB125Q8N687 156 aa7.92□□□□□ -1.14
COL6A3-205ENST00000392004 EPDR1Q9UM22 224 aa7.92□□□□□ -1.14
COL6A3-205ENST00000392004 TENM4Q6N022 2769 aa7.92□□□□□ -1.14
COL6A3-205ENST00000392004 GAGE12BA1L429 117 aa7.92□□□□□ -1.14
COL6A3-205ENST00000392004 LINC00482Q8N8I6 264 aa7.92□□□□□ -1.14
COL6A3-205ENST00000392004 SHANK2-AS3Q9BTD1 123 aa7.92□□□□□ -1.14
COL6A3-205ENST00000392004 SMPXQ9UHP9 88 aa7.92□□□□□ -1.14
COL6A3-205ENST00000392004 PSG8Q9UQ74 426 aa7.92□□□□□ -1.14
COL6A3-205ENST00000392004 RNASE1P07998 156 aaKnown RBP7.92□□□□□ -1.14
COL6A3-205ENST00000392004 ZNF56Q15929 161 aa7.92□□□□□ -1.14
COL6A3-205ENST00000392004 PIFOQ8TCI5 191 aa7.91□□□□□ -1.14
COL6A3-205ENST00000392004 ZNF503Q96F45 646 aa7.91□□□□□ -1.14
COL6A3-205ENST00000392004 CCDC140Q96MF4 163 aa7.91□□□□□ -1.14
COL6A3-205ENST00000392004 SRSF8Q9BRL6 282 aaKnown RBP7.91□□□□□ -1.14
COL6A3-205ENST00000392004 MS4A6AQ9H2W1 248 aa7.91□□□□□ -1.14
COL6A3-205ENST00000392004 CITED1Q99966 193 aa7.91□□□□□ -1.14
COL6A3-205ENST00000392004 PMCHL2Q9BQD1 86 aa7.91□□□□□ -1.14
COL6A3-205ENST00000392004 A0A087X0K7 114 aa7.91□□□□□ -1.14
COL6A3-205ENST00000392004 EDN2P20800 178 aa7.91□□□□□ -1.14
COL6A3-205ENST00000392004 SLC50A1Q9BRV3 221 aa7.91□□□□□ -1.14
COL6A3-205ENST00000392004 RPP21Q9H633 154 aaKnown RBP7.91□□□□□ -1.14
COL6A3-205ENST00000392004 A0A1B0GV72 72 aa7.9□□□□□ -1.14
COL6A3-205ENST00000392004 IGHG4P01861 327 aa7.9□□□□□ -1.14
COL6A3-205ENST00000392004 GDF5OSQ5U4N7 250 aa7.9□□□□□ -1.14
COL6A3-205ENST00000392004 DGAT2L7PQ6IED9 249 aa7.9□□□□□ -1.14
COL6A3-205ENST00000392004 WFDC10AQ9H1F0 79 aa7.9□□□□□ -1.14
COL6A3-205ENST00000392004 TRGV1A0A0A0MS02 117 aa7.9□□□□□ -1.14
COL6A3-205ENST00000392004 A6NDN8 102 aa7.9□□□□□ -1.14
COL6A3-205ENST00000392004 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.9□□□□□ -1.15
COL6A3-205ENST00000392004 IGHV1-24A0A0C4DH33 117 aa7.9□□□□□ -1.15
COL6A3-205ENST00000392004 C7orf71A4D174 169 aa7.9□□□□□ -1.15
COL6A3-205ENST00000392004 CYSRT1A8MQ03 144 aa7.9□□□□□ -1.15
COL6A3-205ENST00000392004 FA2HQ7L5A8 372 aa7.9□□□□□ -1.15
COL6A3-205ENST00000392004 CSTL1Q9H114 145 aa7.9□□□□□ -1.15
COL6A3-205ENST00000392004 H3BVH4 76 aa7.89□□□□□ -1.15
COL6A3-205ENST00000392004 TMEM75Q8N9X5 138 aa7.89□□□□□ -1.15
COL6A3-205ENST00000392004 GPR82Q96P67 336 aa7.89□□□□□ -1.15
COL6A3-205ENST00000392004 TP73-AS1Q9UF72 201 aa7.89□□□□□ -1.15
COL6A3-205ENST00000392004 TMEM86BQ8N661 226 aa7.89□□□□□ -1.15
COL6A3-205ENST00000392004 SLC25A2Q9BXI2 301 aa7.89□□□□□ -1.15
COL6A3-205ENST00000392004 PSG3Q16557 428 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 133.9 ms