RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 LDLRAD1Q5T700 205 aa7□□□□□ -1.29
LIG3-202ENST00000378526 HRCT1Q6UXD1 115 aa7□□□□□ -1.29
LIG3-202ENST00000378526 MRPL36Q9P0J6 103 aaKnown RBP7□□□□□ -1.29
LIG3-202ENST00000378526 ZSWIM8A7E2V4 1837 aa7□□□□□ -1.29
LIG3-202ENST00000378526 C17orf100A8MU93 164 aa7□□□□□ -1.29
LIG3-202ENST00000378526 RBX1P62877 108 aa7□□□□□ -1.29
LIG3-202ENST00000378526 C9orf47Q6ZRZ4 202 aa7□□□□□ -1.29
LIG3-202ENST00000378526 TMEM14BQ9NUH8 114 aa7□□□□□ -1.29
LIG3-202ENST00000378526 H0Y9J4 135 aa7□□□□□ -1.29
LIG3-202ENST00000378526 IL9P15248 144 aa7□□□□□ -1.29
LIG3-202ENST00000378526 SP5Q6BEB4 398 aaPredicted RBP7□□□□□ -1.29
LIG3-202ENST00000378526 LINC00114Q6XXX2 140 aa7□□□□□ -1.29
LIG3-202ENST00000378526 COX7A2LO14548 114 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 NDUFA11Q86Y39 141 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 PRR25Q96S07 402 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 TMEM200BQ69YZ2 307 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 ZNF524Q96C55 264 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 KLK9Q9UKQ9 250 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 C3orf36Q3SXR2 165 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 C16orf54Q6UWD8 224 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 TCL1BO95988 128 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 IGHV3-53P01767 116 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 GNLYP22749 145 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 AGPAT4-IT1Q9H0P7 198 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 PRORYQ9H606 182 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 ZNF106Q9H2Y7 1883 aaKnown RBP6.99□□□□□ -1.29
LIG3-202ENST00000378526 PAX9P55771 341 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 IGHV1-58A0A0C4DH39 117 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 RBAKDNA6NC62 111 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 K7ENP7 123 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 PIK3CD-AS1Q5SR53 167 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 FAM19A5Q7Z5A7 132 aaPredicted RBP6.99□□□□□ -1.29
LIG3-202ENST00000378526 CREBBPQ92793 2442 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 FAM216BQ8N7L0 139 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 COL24A1Q17RW2 1714 aa6.99□□□□□ -1.29
LIG3-202ENST00000378526 TEX49A0A1B0GTD5 131 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 WBP1Q96G27 269 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 CCL4P13236 92 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 CDPF1Q6NVV7 123 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 DEFB104AQ8WTQ1 72 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 LENEPQ9Y5L5 61 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 IGHV1OR15-9A0A0B4J2B8 117 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 IGKV1-8A0A0C4DH67 115 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 TIMM17AQ99595 171 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 PTPRQQ9UMZ3 2332 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 C11orf86A6NJI1 115 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 DAZ2Q13117 558 aaKnown RBP6.98□□□□□ -1.29
LIG3-202ENST00000378526 DAZ4Q86SG3 579 aaKnown RBP6.98□□□□□ -1.29
LIG3-202ENST00000378526 DIRC1Q969H9 104 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 DAZ3Q9NR90 486 aaKnown RBP6.98□□□□□ -1.29
LIG3-202ENST00000378526 TRAV26-2A0A0B4J265 109 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 DKK1O94907 266 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 FAM201AQ5SY85 155 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 PTPRBP23467 1997 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 LECT2O14960 151 aa6.98□□□□□ -1.29
LIG3-202ENST00000378526 WIPF3A6NGB9 483 aa6.97□□□□□ -1.29
LIG3-202ENST00000378526 Q6ZS92 163 aa6.97□□□□□ -1.29
LIG3-202ENST00000378526 MSRB2Q9Y3D2 182 aa6.97□□□□□ -1.29
LIG3-202ENST00000378526 CNOT1A5YKK6 2376 aaKnown RBP6.97□□□□□ -1.29
LIG3-202ENST00000378526 IGHV1-8P0DP01 117 aa6.97□□□□□ -1.29
LIG3-202ENST00000378526 CXCL6P80162 114 aa6.97□□□□□ -1.29
LIG3-202ENST00000378526 ZNF501Q96CX3 271 aaPredicted RBP6.97□□□□□ -1.29
LIG3-202ENST00000378526 SIGLEC9Q9Y336 463 aa6.97□□□□□ -1.29
LIG3-202ENST00000378526 KIF26AQ9ULI4 1882 aaPredicted RBP6.97□□□□□ -1.29
LIG3-202ENST00000378526 ANGP03950 147 aaKnown RBP6.97□□□□□ -1.29
LIG3-202ENST00000378526 P0DMU3 169 aa6.97□□□□□ -1.29
LIG3-202ENST00000378526 FAM231AP0DMU4 169 aa6.97□□□□□ -1.29
LIG3-202ENST00000378526 FAM231CP0DMU5 169 aa6.97□□□□□ -1.29
LIG3-202ENST00000378526 GFI1Q99684 422 aa6.97□□□□□ -1.29
LIG3-202ENST00000378526 C4orf48Q5BLP8 95 aa6.97□□□□□ -1.29
LIG3-202ENST00000378526 C7orf69Q9H7B7 122 aa6.97□□□□□ -1.29
LIG3-202ENST00000378526 THSD7AQ9UPZ6 1657 aa6.97□□□□□ -1.29
LIG3-202ENST00000378526 IGHV1-3A0A0C4DH29 117 aa6.96□□□□□ -1.29
LIG3-202ENST00000378526 IGKV1-9A0A0C4DH69 117 aa6.96□□□□□ -1.29
LIG3-202ENST00000378526 CD24P25063 80 aa6.96□□□□□ -1.29
LIG3-202ENST00000378526 BSPH1Q075Z2 132 aa6.96□□□□□ -1.29
LIG3-202ENST00000378526 CLEC2BQ92478 149 aa6.96□□□□□ -1.29
LIG3-202ENST00000378526 ZC2HC1AQ96GY0 325 aa6.96□□□□□ -1.29
LIG3-202ENST00000378526 CCDC179H3BU77 68 aa6.96□□□□□ -1.29
LIG3-202ENST00000378526 GATA1P15976 413 aaPredicted RBP6.96□□□□□ -1.29
LIG3-202ENST00000378526 C17orf77Q96MU5 243 aa6.96□□□□□ -1.29
LIG3-202ENST00000378526 ZNRF2Q8NHG8 242 aa6.96□□□□□ -1.3
LIG3-202ENST00000378526 FGFBP3Q8TAT2 258 aa6.96□□□□□ -1.3
LIG3-202ENST00000378526 SMIM10L1P0DMW3 83 aa6.96□□□□□ -1.3
LIG3-202ENST00000378526 LOXL1Q08397 574 aaPredicted RBP6.96□□□□□ -1.3
LIG3-202ENST00000378526 NRGNQ92686 78 aa6.96□□□□□ -1.3
LIG3-202ENST00000378526 SMIM10Q96HG1 83 aa6.96□□□□□ -1.3
LIG3-202ENST00000378526 ADAMTSL1Q8N6G6 1762 aa6.96□□□□□ -1.3
LIG3-202ENST00000378526 ENHOQ6UWT2 76 aa6.96□□□□□ -1.3
LIG3-202ENST00000378526 GTSF1Q8WW33 167 aa6.96□□□□□ -1.3
LIG3-202ENST00000378526 NBASA2RRP1 2371 aa6.96□□□□□ -1.3
LIG3-202ENST00000378526 PCOLCEQ15113 449 aa6.96□□□□□ -1.3
LIG3-202ENST00000378526 PRR31Q5SQ13 230 aa6.96□□□□□ -1.3
LIG3-202ENST00000378526 K7EM74 188 aa6.96□□□□□ -1.3
LIG3-202ENST00000378526 NANOS2P60321 138 aaKnown RBP6.96□□□□□ -1.3
LIG3-202ENST00000378526 ZNF503Q96F45 646 aa6.96□□□□□ -1.3
LIG3-202ENST00000378526 IGKV1D-8A0A087WSZ0 117 aa6.95□□□□□ -1.3
LIG3-202ENST00000378526 NRACQ8N912 160 aa6.95□□□□□ -1.3
LIG3-202ENST00000378526 MRPL53Q96EL3 112 aaKnown RBP6.95□□□□□ -1.3
LIG3-202ENST00000378526 TDRG1Q3Y452 100 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms