RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 ZNF524Q96C55 264 aa14.44□□□□□ -0.1
SHANK1-202ENST00000359082 IGLV10-54A0A075B6I4 117 aa14.43□□□□□ -0.1
SHANK1-202ENST00000359082 TRAV4A0A0B4J268 109 aa14.43□□□□□ -0.1
SHANK1-202ENST00000359082 H3BUA1 57 aa14.43□□□□□ -0.1
SHANK1-202ENST00000359082 RBM3P98179 157 aaKnown RBP14.43□□□□□ -0.1
SHANK1-202ENST00000359082 GATA1P15976 413 aaPredicted RBP14.43□□□□□ -0.1
SHANK1-202ENST00000359082 FAM215AQ9Y5M1 114 aa14.43□□□□□ -0.1
SHANK1-202ENST00000359082 ETDCA0A1B0GVM5 59 aa14.42□□□□□ -0.1
SHANK1-202ENST00000359082 VWA8A3KMH1 1905 aa14.42□□□□□ -0.1
SHANK1-202ENST00000359082 TIRAPP58753 221 aa14.42□□□□□ -0.1
SHANK1-202ENST00000359082 CEP290O15078 2479 aa14.42□□□□□ -0.1
SHANK1-202ENST00000359082 RPL39LQ96EH5 51 aaKnown RBP14.42□□□□□ -0.1
SHANK1-202ENST00000359082 FER1L5A0AVI2 2057 aa14.42□□□□□ -0.1
SHANK1-202ENST00000359082 C1orf43Q9BWL3 253 aa14.41□□□□□ -0.1
SHANK1-202ENST00000359082 CHKB-CPT1BH3BT56 60 aa14.41□□□□□ -0.1
SHANK1-202ENST00000359082 SIVA1O15304 175 aa14.41□□□□□ -0.1
SHANK1-202ENST00000359082 CFC1BP0CG36 223 aa14.41□□□□□ -0.1
SHANK1-202ENST00000359082 CFC1P0CG37 223 aa14.41□□□□□ -0.1
SHANK1-202ENST00000359082 AGPAT4-IT1Q9H0P7 198 aa14.41□□□□□ -0.1
SHANK1-202ENST00000359082 SPTA1P02549 2419 aa14.41□□□□□ -0.1
SHANK1-202ENST00000359082 K7EQD1 137 aa14.41□□□□□ -0.1
SHANK1-202ENST00000359082 GYPEP15421 78 aa14.41□□□□□ -0.1
SHANK1-202ENST00000359082 GRNP28799 593 aaKnown RBP14.41□□□□□ -0.1
SHANK1-202ENST00000359082 ZNF493Q6ZR52 646 aa14.41□□□□□ -0.1
SHANK1-202ENST00000359082 SPRNQ5BIV9 151 aa14.4□□□□□ -0.1
SHANK1-202ENST00000359082 FANCMQ8IYD8 2048 aa14.4□□□□□ -0.1
SHANK1-202ENST00000359082 ZNF503Q96F45 646 aa14.4□□□□□ -0.1
SHANK1-202ENST00000359082 ETV2O00321 342 aaPredicted RBP14.4□□□□□ -0.1
SHANK1-202ENST00000359082 IGHG2P01859 326 aa14.4□□□□□ -0.1
SHANK1-202ENST00000359082 CAMK2N2Q96S95 79 aa14.4□□□□□ -0.1
SHANK1-202ENST00000359082 NCR3O14931 201 aa14.39□□□□□ -0.11
SHANK1-202ENST00000359082 CTSZQ9UBR2 303 aa14.39□□□□□ -0.11
SHANK1-202ENST00000359082 RBAKDNA6NC62 111 aa14.39□□□□□ -0.11
SHANK1-202ENST00000359082 PCP2Q8IVA1 136 aa14.39□□□□□ -0.11
SHANK1-202ENST00000359082 ESM1Q9NQ30 184 aa14.39□□□□□ -0.11
SHANK1-202ENST00000359082 ICOSQ9Y6W8 199 aa14.39□□□□□ -0.11
SHANK1-202ENST00000359082 COX7B2Q8TF08 81 aa14.38□□□□□ -0.11
SHANK1-202ENST00000359082 TIMM17AQ99595 171 aa14.38□□□□□ -0.11
SHANK1-202ENST00000359082 C9orf66Q5T8R8 295 aa14.38□□□□□ -0.11
SHANK1-202ENST00000359082 HERV-K104P63124 156 aa14.38□□□□□ -0.11
SHANK1-202ENST00000359082 C11orf52Q96A22 123 aa14.38□□□□□ -0.11
SHANK1-202ENST00000359082 C16orf74Q96GX8 76 aa14.38□□□□□ -0.11
SHANK1-202ENST00000359082 RLFQ13129 1914 aa14.38□□□□□ -0.11
SHANK1-202ENST00000359082 KMT2EQ8IZD2 1858 aa14.38□□□□□ -0.11
SHANK1-202ENST00000359082 IGLC7A0M8Q6 106 aa14.38□□□□□ -0.11
SHANK1-202ENST00000359082 TMEM258P61165 79 aa14.38□□□□□ -0.11
SHANK1-202ENST00000359082 PLA2G2CQ5R387 149 aa14.38□□□□□ -0.11
SHANK1-202ENST00000359082 PIFOQ8TCI5 191 aa14.38□□□□□ -0.11
SHANK1-202ENST00000359082 IGHV4-38-2P0DP08 117 aa14.37□□□□□ -0.11
SHANK1-202ENST00000359082 RSPO1Q2MKA7 263 aaPredicted RBP14.37□□□□□ -0.11
SHANK1-202ENST00000359082 AKAP6Q13023 2319 aa14.37□□□□□ -0.11
SHANK1-202ENST00000359082 TEX48A0A1B0GUV7 120 aa14.37□□□□□ -0.11
SHANK1-202ENST00000359082 PRR20EP86478 221 aa14.37□□□□□ -0.11
SHANK1-202ENST00000359082 PRR20CP86479 221 aa14.37□□□□□ -0.11
SHANK1-202ENST00000359082 PRR20DP86480 221 aa14.37□□□□□ -0.11
SHANK1-202ENST00000359082 PRR20BP86481 221 aa14.37□□□□□ -0.11
SHANK1-202ENST00000359082 PRR20AP86496 221 aa14.37□□□□□ -0.11
SHANK1-202ENST00000359082 RITA1Q96K30 269 aa14.37□□□□□ -0.11
SHANK1-202ENST00000359082 CCL25O15444 150 aa14.36□□□□□ -0.11
SHANK1-202ENST00000359082 WDR81Q562E7 1941 aa14.36□□□□□ -0.11
SHANK1-202ENST00000359082 GP9P14770 177 aa14.36□□□□□ -0.11
SHANK1-202ENST00000359082 WIPF2Q8TF74 440 aaPredicted RBP14.36□□□□□ -0.11
SHANK1-202ENST00000359082 SDK2Q58EX2 2172 aa14.36□□□□□ -0.11
SHANK1-202ENST00000359082 SPANXCQ9NY87 97 aa14.36□□□□□ -0.11
SHANK1-202ENST00000359082 PHF3Q92576 2039 aaKnown RBP14.36□□□□□ -0.11
SHANK1-202ENST00000359082 F8W735 103 aaPredicted RBP14.36□□□□□ -0.11
SHANK1-202ENST00000359082 ZNF747Q9BV97 191 aa14.36□□□□□ -0.11
SHANK1-202ENST00000359082 SS18L2Q9UHA2 77 aa14.36□□□□□ -0.11
SHANK1-202ENST00000359082 B5MCH6 92 aa14.35□□□□□ -0.11
SHANK1-202ENST00000359082 ZFP2Q6ZN57 461 aa14.35□□□□□ -0.11
SHANK1-202ENST00000359082 PRSS33Q8NF86 280 aa14.35□□□□□ -0.11
SHANK1-202ENST00000359082 FUSP35637 526 aaKnown RBP eCLIP14.35□□□□□ -0.11
SHANK1-202ENST00000359082 KAAG1Q9UBP8 84 aa14.35□□□□□ -0.11
SHANK1-202ENST00000359082 ZDBF2Q9HCK1 2354 aa14.35□□□□□ -0.11
SHANK1-202ENST00000359082 Q6ZVH6 145 aa14.35□□□□□ -0.11
SHANK1-202ENST00000359082 WFDC9Q8NEX5 89 aa14.34□□□□□ -0.11
SHANK1-202ENST00000359082 ATP6V0E2Q8NHE4 81 aa14.34□□□□□ -0.11
SHANK1-202ENST00000359082 K7EMI3 77 aa14.34□□□□□ -0.11
SHANK1-202ENST00000359082 MYO7BQ6PIF6 2116 aa14.34□□□□□ -0.11
SHANK1-202ENST00000359082 NPBQ8NG41 125 aa14.34□□□□□ -0.11
SHANK1-202ENST00000359082 COX7A2LO14548 114 aa14.33□□□□□ -0.11
SHANK1-202ENST00000359082 MUSTN1Q8IVN3 82 aa14.33□□□□□ -0.11
SHANK1-202ENST00000359082 PRSS47A8MTI9 375 aa14.33□□□□□ -0.12
SHANK1-202ENST00000359082 DEFB113Q30KQ7 82 aa14.33□□□□□ -0.12
SHANK1-202ENST00000359082 HIST2H2BCQ6DN03 193 aa14.33□□□□□ -0.12
SHANK1-202ENST00000359082 TCF20Q9UGU0 1960 aaKnown RBP14.33□□□□□ -0.12
SHANK1-202ENST00000359082 CENPVL3A0A0U1RRI6 287 aa14.32□□□□□ -0.12
SHANK1-202ENST00000359082 AJUBAQ96IF1 538 aa14.32□□□□□ -0.12
SHANK1-202ENST00000359082 KIAA1671Q9BY89 1806 aa14.32□□□□□ -0.12
SHANK1-202ENST00000359082 C9orf47Q6ZRZ4 202 aa14.32□□□□□ -0.12
SHANK1-202ENST00000359082 CCL18P55774 89 aa14.32□□□□□ -0.12
SHANK1-202ENST00000359082 SND1-IT1Q9HBX3 110 aa14.32□□□□□ -0.12
SHANK1-202ENST00000359082 CEP250Q9BV73 2442 aa14.32□□□□□ -0.12
SHANK1-202ENST00000359082 DAND5Q8N907 189 aa14.31□□□□□ -0.12
SHANK1-202ENST00000359082 C8orf31Q8N9H6 132 aa14.31□□□□□ -0.12
SHANK1-202ENST00000359082 IGHV4-30-2A0A087WSY4 118 aa14.31□□□□□ -0.12
SHANK1-202ENST00000359082 MRPL23Q16540 153 aaKnown RBP14.31□□□□□ -0.12
SHANK1-202ENST00000359082 MYLKQ15746 1914 aa14.31□□□□□ -0.12
SHANK1-202ENST00000359082 IGKV3D-7A0A0C4DH55 119 aa14.31□□□□□ -0.12
SHANK1-202ENST00000359082 MRPL36Q9P0J6 103 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms