RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 UBE2DNLQ8IWF7 75 aa9.3□□□□□ -0.92
COL9A1-202ENST00000357250 TMEM243Q9BU79 118 aa9.3□□□□□ -0.92
COL9A1-202ENST00000357250 TPSG1Q9NRR2 321 aa9.3□□□□□ -0.92
COL9A1-202ENST00000357250 F8W1H4 67 aa9.29□□□□□ -0.92
COL9A1-202ENST00000357250 TRAV8-3A0A0A6YYJ7 113 aa9.29□□□□□ -0.92
COL9A1-202ENST00000357250 NPC2P61916 151 aa9.29□□□□□ -0.92
COL9A1-202ENST00000357250 RHOHQ15669 191 aa9.29□□□□□ -0.92
COL9A1-202ENST00000357250 PRR31Q5SQ13 230 aa9.29□□□□□ -0.92
COL9A1-202ENST00000357250 VWC2LB2RUY7 222 aa9.29□□□□□ -0.92
COL9A1-202ENST00000357250 GAGE1Q13065 139 aa9.29□□□□□ -0.92
COL9A1-202ENST00000357250 IGLL1P15814 213 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 AZU1P20160 251 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 OCIAD2Q56VL3 154 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 IGFBPL1Q8WX77 278 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 FOXI2Q6ZQN5 318 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 PPDPFLQ8WWR9 84 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 XCL2Q9UBD3 114 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 HIVEP3Q5T1R4 2406 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 NAV2Q8IVL1 2488 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 H3BMM0 161 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 NPYP01303 97 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 DEFB130BP0DP73 79 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 DEFB130AP0DP74 79 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 A0A1B0GUS0 222 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 HERVK_113P63121 156 aa9.28□□□□□ -0.92
COL9A1-202ENST00000357250 PRUNE2Q8WUY3 3088 aa9.27□□□□□ -0.92
COL9A1-202ENST00000357250 SHISA9B4DS77 424 aa9.27□□□□□ -0.92
COL9A1-202ENST00000357250 INS-IGF2F8WCM5 200 aa9.27□□□□□ -0.92
COL9A1-202ENST00000357250 APOC4P55056 127 aa9.27□□□□□ -0.92
COL9A1-202ENST00000357250 CR1LQ2VPA4 569 aa9.27□□□□□ -0.92
COL9A1-202ENST00000357250 EML6Q6ZMW3 1958 aa9.27□□□□□ -0.93
COL9A1-202ENST00000357250 NPBQ8NG41 125 aa9.27□□□□□ -0.93
COL9A1-202ENST00000357250 COL4A4P53420 1690 aaPredicted RBP9.27□□□□□ -0.93
COL9A1-202ENST00000357250 GRNP28799 593 aaKnown RBP9.27□□□□□ -0.93
COL9A1-202ENST00000357250 UTF1Q5T230 341 aa9.27□□□□□ -0.93
COL9A1-202ENST00000357250 NDUFA12Q9UI09 145 aa9.27□□□□□ -0.93
COL9A1-202ENST00000357250 UNC80Q8N2C7 3258 aa9.27□□□□□ -0.93
COL9A1-202ENST00000357250 GAGE12JA6NER3 117 aa9.27□□□□□ -0.93
COL9A1-202ENST00000357250 SOCS3O14543 225 aa9.27□□□□□ -0.93
COL9A1-202ENST00000357250 DAD1P61803 113 aa9.27□□□□□ -0.93
COL9A1-202ENST00000357250 GAGE4Q13068 117 aa9.27□□□□□ -0.93
COL9A1-202ENST00000357250 GAGE5Q13069 117 aa9.27□□□□□ -0.93
COL9A1-202ENST00000357250 RNF152Q8N8N0 203 aa9.27□□□□□ -0.93
COL9A1-202ENST00000357250 UBE2WQ96B02 151 aa9.27□□□□□ -0.93
COL9A1-202ENST00000357250 MRPL35Q9NZE8 188 aaKnown RBP9.27□□□□□ -0.93
COL9A1-202ENST00000357250 SETD2Q9BYW2 2564 aaPredicted RBP9.26□□□□□ -0.93
COL9A1-202ENST00000357250 C22orf46C9J442 243 aa9.26□□□□□ -0.93
COL9A1-202ENST00000357250 LINC01545Q5VT33 79 aa9.26□□□□□ -0.93
COL9A1-202ENST00000357250 PRO1854Q9UHT4 67 aa9.26□□□□□ -0.93
COL9A1-202ENST00000357250 DYSFO75923 2080 aa9.26□□□□□ -0.93
COL9A1-202ENST00000357250 K7EP34 96 aa9.26□□□□□ -0.93
COL9A1-202ENST00000357250 HIST1H4AP62805 103 aaKnown RBP9.26□□□□□ -0.93
COL9A1-202ENST00000357250 CTSZQ9UBR2 303 aa9.26□□□□□ -0.93
COL9A1-202ENST00000357250 SPINK8P0C7L1 97 aa9.25□□□□□ -0.93
COL9A1-202ENST00000357250 FGF23Q9GZV9 251 aaPredicted RBP9.25□□□□□ -0.93
COL9A1-202ENST00000357250 KLK9Q9UKQ9 250 aa9.25□□□□□ -0.93
COL9A1-202ENST00000357250 KIAA1549LQ6ZVL6 1849 aa9.25□□□□□ -0.93
COL9A1-202ENST00000357250 KNCNA6PVL3 124 aa9.25□□□□□ -0.93
COL9A1-202ENST00000357250 FOXE3Q13461 319 aa9.25□□□□□ -0.93
COL9A1-202ENST00000357250 ZNF747Q9BV97 191 aa9.25□□□□□ -0.93
COL9A1-202ENST00000357250 ZFYVE26Q68DK2 2539 aa9.25□□□□□ -0.93
COL9A1-202ENST00000357250 TRAV13-2A0A0B4J235 113 aa9.25□□□□□ -0.93
COL9A1-202ENST00000357250 K7EN84 100 aa9.25□□□□□ -0.93
COL9A1-202ENST00000357250 DIAPH2-AS1Q14236 149 aa9.25□□□□□ -0.93
COL9A1-202ENST00000357250 PTPRSQ13332 1948 aa9.25□□□□□ -0.93
COL9A1-202ENST00000357250 ZNF561-AS1K7EIQ3 104 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 NDUFS7O75251 213 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 BVES-AS1Q5T3Y7 98 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 ZNRF2Q8NHG8 242 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 J3QQQ9 107 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 CDK2AP2O75956 126 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 HOXB4P17483 251 aaPredicted RBP9.24□□□□□ -0.93
COL9A1-202ENST00000357250 SPRNQ5BIV9 151 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 SPAG8Q99932 426 aaPredicted RBP9.24□□□□□ -0.93
COL9A1-202ENST00000357250 GTSF1LQ9H1H1 148 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 TNCP24821 2201 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 ZNF106Q9H2Y7 1883 aaKnown RBP9.24□□□□□ -0.93
COL9A1-202ENST00000357250 CENPVL3A0A0U1RRI6 287 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 PSCAO43653 123 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 HLA-DMBP28068 263 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 CEND1Q8N111 149 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 MAPK1IP1LQ8NDC0 245 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 AGPAT4-IT1Q9H0P7 198 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 VPREB3Q9UKI3 123 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 Q96MF0 132 aa9.24□□□□□ -0.93
COL9A1-202ENST00000357250 MED12LQ86YW9 2145 aa9.23□□□□□ -0.93
COL9A1-202ENST00000357250 C3orf56Q8N813 242 aa9.23□□□□□ -0.93
COL9A1-202ENST00000357250 RMI2Q96E14 147 aa9.23□□□□□ -0.93
COL9A1-202ENST00000357250 GAGE2AQ6NT46 116 aa9.23□□□□□ -0.93
COL9A1-202ENST00000357250 SPRY4Q9C004 299 aa9.23□□□□□ -0.93
COL9A1-202ENST00000357250 DKK4Q9UBT3 224 aa9.23□□□□□ -0.93
COL9A1-202ENST00000357250 A0A1W2PPM0 123 aa9.23□□□□□ -0.93
COL9A1-202ENST00000357250 GP9P14770 177 aa9.23□□□□□ -0.93
COL9A1-202ENST00000357250 I3L2K1 104 aa9.22□□□□□ -0.93
COL9A1-202ENST00000357250 DEFB104AQ8WTQ1 72 aa9.22□□□□□ -0.93
COL9A1-202ENST00000357250 IGLV11-55A0A075B6I3 123 aa9.22□□□□□ -0.93
COL9A1-202ENST00000357250 F5H768 121 aa9.22□□□□□ -0.93
COL9A1-202ENST00000357250 K7EP13 123 aa9.22□□□□□ -0.93
COL9A1-202ENST00000357250 KLF2Q9Y5W3 355 aaPredicted RBP9.22□□□□□ -0.93
COL9A1-202ENST00000357250 USP9YO00507 2555 aaPredicted RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms