RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 FAM162BQ5T6X4 162 aa15.83■□□□□ 0.13
SHMT1-203ENST00000354098 CXorf65A6NEN9 183 aa15.83■□□□□ 0.12
SHMT1-203ENST00000354098 NOP10Q9NPE3 64 aaKnown RBP15.83■□□□□ 0.12
SHMT1-203ENST00000354098 MDFICQ9P1T7 246 aa15.83■□□□□ 0.12
SHMT1-203ENST00000354098 IGKV3D-20A0A0C4DH25 116 aa15.82■□□□□ 0.12
SHMT1-203ENST00000354098 NDUFS6O75380 124 aaKnown RBP15.82■□□□□ 0.12
SHMT1-203ENST00000354098 SPART-AS1P0CW21 52 aa15.82■□□□□ 0.12
SHMT1-203ENST00000354098 TIMM8BQ9Y5J9 83 aaPredicted RBP15.82■□□□□ 0.12
SHMT1-203ENST00000354098 TYMSP04818 313 aa15.81■□□□□ 0.12
SHMT1-203ENST00000354098 PEA15Q15121 130 aa15.81■□□□□ 0.12
SHMT1-203ENST00000354098 PRR27Q6MZM9 219 aa15.81■□□□□ 0.12
SHMT1-203ENST00000354098 SNURFLB1AK76 121 aa15.8■□□□□ 0.12
SHMT1-203ENST00000354098 MGST1P10620 155 aaKnown RBP15.8■□□□□ 0.12
SHMT1-203ENST00000354098 KCNS1Q96KK3 526 aa15.8■□□□□ 0.12
SHMT1-203ENST00000354098 SDF2L1Q9HCN8 221 aa15.8■□□□□ 0.12
SHMT1-203ENST00000354098 M0R036 132 aa15.79■□□□□ 0.12
SHMT1-203ENST00000354098 ORM1P02763 201 aa15.79■□□□□ 0.12
SHMT1-203ENST00000354098 C12orf74Q32Q52 190 aa15.79■□□□□ 0.12
SHMT1-203ENST00000354098 IBA57Q5T440 356 aaKnown RBP15.79■□□□□ 0.12
SHMT1-203ENST00000354098 TRGV11A0A075B6L2 103 aa15.79■□□□□ 0.12
SHMT1-203ENST00000354098 C9JCJ5 164 aa15.79■□□□□ 0.12
SHMT1-203ENST00000354098 OCC1Q8TAD7 63 aa15.79■□□□□ 0.12
SHMT1-203ENST00000354098 IGHV3-16A0A0C4DH30 117 aa15.78■□□□□ 0.12
SHMT1-203ENST00000354098 LYRM9A8MSI8 78 aa15.78■□□□□ 0.12
SHMT1-203ENST00000354098 TCL1AP56279 114 aa15.78■□□□□ 0.12
SHMT1-203ENST00000354098 ZNF575Q86XF7 245 aa15.78■□□□□ 0.12
SHMT1-203ENST00000354098 MUC7Q8TAX7 377 aa15.78■□□□□ 0.12
SHMT1-203ENST00000354098 SMIM12Q96EX1 92 aa15.78■□□□□ 0.12
SHMT1-203ENST00000354098 DNAH7Q8WXX0 4024 aa15.78■□□□□ 0.12
SHMT1-203ENST00000354098 ZNF415Q09FC8 603 aa15.77■□□□□ 0.12
SHMT1-203ENST00000354098 DAZ2Q13117 558 aaKnown RBP15.77■□□□□ 0.12
SHMT1-203ENST00000354098 OR5I1Q13606 314 aa15.77■□□□□ 0.12
SHMT1-203ENST00000354098 Q6ZTC4 211 aa15.77■□□□□ 0.12
SHMT1-203ENST00000354098 SMIM7Q9BQ49 75 aa15.77■□□□□ 0.12
SHMT1-203ENST00000354098 SMDT1Q9H4I9 107 aa15.77■□□□□ 0.12
SHMT1-203ENST00000354098 B4DEV8 164 aa15.76■□□□□ 0.11
SHMT1-203ENST00000354098 KRBOX1C9JBD0 128 aa15.76■□□□□ 0.11
SHMT1-203ENST00000354098 DEFB130BP0DP73 79 aa15.76■□□□□ 0.11
SHMT1-203ENST00000354098 DEFB130AP0DP74 79 aa15.76■□□□□ 0.11
SHMT1-203ENST00000354098 TMSB15BA0A087X1C1 80 aa15.76■□□□□ 0.11
SHMT1-203ENST00000354098 ZNF727A8MUV8 499 aa15.76■□□□□ 0.11
SHMT1-203ENST00000354098 K7EN84 100 aa15.76■□□□□ 0.11
SHMT1-203ENST00000354098 TEX48A0A1B0GUV7 120 aa15.75■□□□□ 0.11
SHMT1-203ENST00000354098 RPL19P84098 196 aaKnown RBP15.75■□□□□ 0.11
SHMT1-203ENST00000354098 LINC01559Q495D7 138 aa15.75■□□□□ 0.11
SHMT1-203ENST00000354098 ZFAND6Q6FIF0 208 aa15.75■□□□□ 0.11
SHMT1-203ENST00000354098 Q6ZTI0 123 aa15.75■□□□□ 0.11
SHMT1-203ENST00000354098 GRIFINA4D1Z8 144 aa15.74■□□□□ 0.11
SHMT1-203ENST00000354098 DAD1P61803 113 aa15.74■□□□□ 0.11
SHMT1-203ENST00000354098 C19orf71A6NCJ1 209 aa15.73■□□□□ 0.11
SHMT1-203ENST00000354098 SPINK4O60575 86 aa15.73■□□□□ 0.11
SHMT1-203ENST00000354098 CSMD3Q7Z407 3707 aa15.73■□□□□ 0.11
SHMT1-203ENST00000354098 TRGV1A0A0A0MS02 117 aa15.73■□□□□ 0.11
SHMT1-203ENST00000354098 GAGE12BA1L429 117 aa15.73■□□□□ 0.11
SHMT1-203ENST00000354098 GAGE7O76087 117 aa15.73■□□□□ 0.11
SHMT1-203ENST00000354098 GAGE12FP0CL80 117 aa15.73■□□□□ 0.11
SHMT1-203ENST00000354098 GAGE12GP0CL81 117 aa15.73■□□□□ 0.11
SHMT1-203ENST00000354098 GAGE12IP0CL82 117 aa15.73■□□□□ 0.11
SHMT1-203ENST00000354098 RNASE3P12724 160 aaKnown RBP15.73■□□□□ 0.11
SHMT1-203ENST00000354098 LINC00612Q8N6U2 182 aa15.73■□□□□ 0.11
SHMT1-203ENST00000354098 MRPL16Q9NX20 251 aaKnown RBP15.73■□□□□ 0.11
SHMT1-203ENST00000354098 PHLDA1Q8WV24 401 aaPredicted RBP15.72■□□□□ 0.11
SHMT1-203ENST00000354098 DAZAP1Q96EP5 407 aaKnown RBP15.71■□□□□ 0.11
SHMT1-203ENST00000354098 SPXQ9BT56 116 aa15.71■□□□□ 0.11
SHMT1-203ENST00000354098 ASIPP42127 132 aa15.7■□□□□ 0.1
SHMT1-203ENST00000354098 LINC01551Q86U37 167 aa15.7■□□□□ 0.1
SHMT1-203ENST00000354098 C9orf85Q96MD7 179 aa15.7■□□□□ 0.1
SHMT1-203ENST00000354098 RNASE7Q9H1E1 156 aaKnown RBP15.7■□□□□ 0.1
SHMT1-203ENST00000354098 BIN3Q9NQY0 253 aa15.7■□□□□ 0.1
SHMT1-203ENST00000354098 LY96Q9Y6Y9 160 aa15.7■□□□□ 0.1
SHMT1-203ENST00000354098 S100A4P26447 101 aaKnown RBP15.7■□□□□ 0.1
SHMT1-203ENST00000354098 FAM74A3Q4VXF1 159 aa15.7■□□□□ 0.1
SHMT1-203ENST00000354098 SOHLH1Q5JUK2 328 aa15.7■□□□□ 0.1
SHMT1-203ENST00000354098 NUDT10Q8NFP7 164 aa15.7■□□□□ 0.1
SHMT1-203ENST00000354098 NUDT11Q96G61 164 aa15.7■□□□□ 0.1
SHMT1-203ENST00000354098 H3BVH4 76 aa15.69■□□□□ 0.1
SHMT1-203ENST00000354098 TMEM241Q24JQ0 296 aa15.69■□□□□ 0.1
SHMT1-203ENST00000354098 LGALS9BQ3B8N2 356 aa15.69■□□□□ 0.1
SHMT1-203ENST00000354098 P01737 135 aa15.68■□□□□ 0.1
SHMT1-203ENST00000354098 SFTA3P0C7M3 94 aa15.68■□□□□ 0.1
SHMT1-203ENST00000354098 DNLZQ5SXM8 178 aa15.68■□□□□ 0.1
SHMT1-203ENST00000354098 C3orf84H3BNL1 204 aa15.67■□□□□ 0.1
SHMT1-203ENST00000354098 M0R2P5 195 aa15.67■□□□□ 0.1
SHMT1-203ENST00000354098 ARMS2P0C7Q2 107 aa15.67■□□□□ 0.1
SHMT1-203ENST00000354098 HTN3P15516 51 aa15.67■□□□□ 0.1
SHMT1-203ENST00000354098 OR2D3Q8NGH3 330 aa15.67■□□□□ 0.1
SHMT1-203ENST00000354098 IL36BQ9NZH7 164 aa15.67■□□□□ 0.1
SHMT1-203ENST00000354098 TRGV2A0A075B6R0 118 aa15.67■□□□□ 0.1
SHMT1-203ENST00000354098 DEFB131BA0A096LNP1 70 aa15.67■□□□□ 0.1
SHMT1-203ENST00000354098 TRAV10A0A0B4J240 114 aa15.67■□□□□ 0.1
SHMT1-203ENST00000354098 CASC10Q5T4H9 136 aa15.67■□□□□ 0.1
SHMT1-203ENST00000354098 CEMP1Q6PRD7 247 aaPredicted RBP15.67■□□□□ 0.1
SHMT1-203ENST00000354098 COMMD7Q86VX2 200 aa15.67■□□□□ 0.1
SHMT1-203ENST00000354098 RASL10AQ92737 203 aa15.67■□□□□ 0.1
SHMT1-203ENST00000354098 LINC00862A6NCI5 91 aa15.66■□□□□ 0.1
SHMT1-203ENST00000354098 GZMBP10144 247 aa15.66■□□□□ 0.1
SHMT1-203ENST00000354098 RPL23P62829 140 aaKnown RBP15.66■□□□□ 0.1
SHMT1-203ENST00000354098 NAT8Q9UHE5 227 aa15.66■□□□□ 0.1
SHMT1-203ENST00000354098 MUC4Q99102 2169 aa15.64■□□□□ 0.09
SHMT1-203ENST00000354098 ATP5G1P05496 136 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms