RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 TEX48A0A1B0GUV7 120 aa6.34□□□□□ -1.39
CIITA-201ENST00000324288 Q0VFX4 171 aa6.34□□□□□ -1.39
CIITA-201ENST00000324288 SHANK2-AS3Q9BTD1 123 aa6.34□□□□□ -1.39
CIITA-201ENST00000324288 G3V318 75 aa6.34□□□□□ -1.39
CIITA-201ENST00000324288 NDUFB8O95169 186 aa6.34□□□□□ -1.39
CIITA-201ENST00000324288 CRYGSP22914 178 aa6.34□□□□□ -1.39
CIITA-201ENST00000324288 NPYP01303 97 aa6.34□□□□□ -1.39
CIITA-201ENST00000324288 IGHG2P01859 326 aa6.34□□□□□ -1.39
CIITA-201ENST00000324288 ADAMTS7Q9UKP4 1686 aa6.34□□□□□ -1.39
CIITA-201ENST00000324288 TAL2Q16559 108 aa6.34□□□□□ -1.39
CIITA-201ENST00000324288 A0A1B0GX51 115 aa6.34□□□□□ -1.39
CIITA-201ENST00000324288 C2orf66Q6UXQ4 117 aa6.34□□□□□ -1.39
CIITA-201ENST00000324288 NAV2Q8IVL1 2488 aa6.34□□□□□ -1.4
CIITA-201ENST00000324288 RNF114Q9Y508 228 aa6.34□□□□□ -1.4
CIITA-201ENST00000324288 C9orf139Q6ZV77 190 aa6.34□□□□□ -1.4
CIITA-201ENST00000324288 A0A0J9YY99 117 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 SRRM5B3KS81 715 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 IGLL5B9A064 214 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 IGLV2-23P01705 113 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 IGLC1P0CG04 106 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 IGKV1D-17A0A075B6S4 117 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 TRAV13-2A0A0B4J235 113 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 ZNF726P1Q15940 193 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 SPTSSBQ8NFR3 76 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 KIAA1671Q9BY89 1806 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 WFDC9Q8NEX5 89 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 FLVCR1-AS1Q8TAF5 88 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 DSCR9P59020 149 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 LINC01356Q8N9X3 169 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 IGF2BP2-AS1Q96M15 143 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 DAZ1Q9NQZ3 744 aaKnown RBP6.33□□□□□ -1.4
CIITA-201ENST00000324288 THSD7AQ9UPZ6 1657 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 TRBV25-1A0A075B6N4 114 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 ATP6V0E1O15342 81 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 WDR90Q96KV7 1748 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.33□□□□□ -1.4
CIITA-201ENST00000324288 J3QQQ9 107 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 TMEM141Q96I45 108 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 KLF5Q13887 457 aaPredicted RBP6.33□□□□□ -1.4
CIITA-201ENST00000324288 USMG5Q96IX5 58 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 C22orf46C9J442 243 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 NDUFC2O95298 119 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 IGKV1-39P01597 117 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 IGKV1D-39P04432 117 aa6.33□□□□□ -1.4
CIITA-201ENST00000324288 IGLC7A0M8Q6 106 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 CMC4P56277 68 aaPredicted RBP6.32□□□□□ -1.4
CIITA-201ENST00000324288 Q6ZQT7 251 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 MDS2Q8NDY4 140 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 Q9HAA7 133 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 FAM223BA6NKX1 122 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 PRSS46E5RG02 174 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 FAM223AQ8IWN6 122 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 MRPS18CQ9Y3D5 142 aaKnown RBP6.32□□□□□ -1.4
CIITA-201ENST00000324288 CRYGCP07315 174 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 GATA1P15976 413 aaPredicted RBP6.32□□□□□ -1.4
CIITA-201ENST00000324288 BAALCQ8WXS3 180 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 IGKV1OR2-108A0A075B7D4 117 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 QRFPP83859 136 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 TRPT1Q86TN4 253 aaKnown RBP6.32□□□□□ -1.4
CIITA-201ENST00000324288 TEX36Q5VZQ5 186 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 COL4A6Q14031 1691 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 SIP14410 1827 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 SMIM27A0A1W2PRY6 76 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 XCL1P47992 114 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 SPANXA1Q9NS26 97 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 MINOS1Q5TGZ0 78 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 MINOS1-NBL1R4GNA1 71 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 TRAV26-1A0A087WT03 109 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 TDRG1Q3Y452 100 aa6.32□□□□□ -1.4
CIITA-201ENST00000324288 CT83Q5H943 113 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 RNF166Q96A37 237 aaPredicted RBP6.31□□□□□ -1.4
CIITA-201ENST00000324288 V9GYV3 84 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 NUPR1O60356 82 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 F8VRH5 84 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 ANGP03950 147 aaKnown RBP6.31□□□□□ -1.4
CIITA-201ENST00000324288 CD59P13987 128 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 Q96MF0 132 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 FAM236AA0A1B0GUQ0 79 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 FAM236BA0A1B0GV22 79 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 E7EQL1 145 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 NTN3O00634 580 aaPredicted RBP6.31□□□□□ -1.4
CIITA-201ENST00000324288 TMEM75Q8N9X5 138 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 FNDC10F2Z333 226 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 HLA-DMBP28068 263 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 IGLV3-32A0A0A0MS00 114 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 K7EN84 100 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 COX7B2Q8TF08 81 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 I3L3M4 83 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 J3KT08 172 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 ZNRF2Q8NHG8 242 aa6.31□□□□□ -1.4
CIITA-201ENST00000324288 UBE2BP63146 152 aa6.3□□□□□ -1.4
CIITA-201ENST00000324288 IGLV3-12A0A075B6K2 115 aa6.3□□□□□ -1.4
CIITA-201ENST00000324288 C10orf91Q5T1B1 145 aa6.3□□□□□ -1.4
CIITA-201ENST00000324288 LINC01619G3V211 115 aa6.3□□□□□ -1.4
CIITA-201ENST00000324288 CR1LQ2VPA4 569 aa6.3□□□□□ -1.4
CIITA-201ENST00000324288 WDR86Q86TI4 376 aa6.3□□□□□ -1.4
CIITA-201ENST00000324288 C8orf86Q6ZUL3 223 aa6.3□□□□□ -1.4
CIITA-201ENST00000324288 CFC1BP0CG36 223 aa6.3□□□□□ -1.4
CIITA-201ENST00000324288 CFC1P0CG37 223 aa6.3□□□□□ -1.4
CIITA-201ENST00000324288 RPL18AQ02543 176 aaKnown RBP6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms