RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 CDC34P49427 236 aaPredicted RBP8.17□□□□□ -1.1
CLN3-257ENST00000637110 RNF212Q495C1 297 aa8.17□□□□□ -1.1
CLN3-257ENST00000637110 OTORQ9NRC9 128 aa8.17□□□□□ -1.1
CLN3-257ENST00000637110 DNAH17Q9UFH2 4485 aa8.17□□□□□ -1.1
CLN3-257ENST00000637110 PKD1P98161 4303 aa8.17□□□□□ -1.1
CLN3-257ENST00000637110 IGHV1OR15-1A0A075B7D0 117 aa8.16□□□□□ -1.1
CLN3-257ENST00000637110 A0A0J9YY99 117 aa8.16□□□□□ -1.1
CLN3-257ENST00000637110 ZNF324O75467 553 aaPredicted RBP8.16□□□□□ -1.1
CLN3-257ENST00000637110 MBP02144 154 aa8.16□□□□□ -1.1
CLN3-257ENST00000637110 ATP6V0CP27449 155 aa8.16□□□□□ -1.1
CLN3-257ENST00000637110 CCL18P55774 89 aa8.16□□□□□ -1.1
CLN3-257ENST00000637110 MUC21Q5SSG8 566 aa8.16□□□□□ -1.1
CLN3-257ENST00000637110 PRR9Q5T870 116 aa8.16□□□□□ -1.1
CLN3-257ENST00000637110 Q6ZTI0 123 aa8.16□□□□□ -1.1
CLN3-257ENST00000637110 IQCF2Q8IXL9 164 aa8.16□□□□□ -1.1
CLN3-257ENST00000637110 ZFAND2AQ8N6M9 145 aa8.16□□□□□ -1.1
CLN3-257ENST00000637110 OR2T35Q8NGX2 323 aa8.16□□□□□ -1.1
CLN3-257ENST00000637110 GNPNAT1Q96EK6 184 aaPredicted RBP8.16□□□□□ -1.1
CLN3-257ENST00000637110 PSMG3Q9BT73 122 aaPredicted RBP8.16□□□□□ -1.1
CLN3-257ENST00000637110 TRAV26-1A0A087WT03 109 aa8.15□□□□□ -1.1
CLN3-257ENST00000637110 ARL14EPLP0DKL9 152 aa8.15□□□□□ -1.1
CLN3-257ENST00000637110 DAZ2Q13117 558 aaKnown RBP8.15□□□□□ -1.1
CLN3-257ENST00000637110 ANXA2RQ3ZCQ2 193 aa8.15□□□□□ -1.1
CLN3-257ENST00000637110 SOHLH1Q5JUK2 328 aa8.15□□□□□ -1.1
CLN3-257ENST00000637110 GOLT1AQ6ZVE7 132 aa8.15□□□□□ -1.1
CLN3-257ENST00000637110 OR2G3Q8NGZ4 309 aa8.15□□□□□ -1.1
CLN3-257ENST00000637110 LINC00467Q9BRT7 94 aa8.15□□□□□ -1.1
CLN3-257ENST00000637110 ACTR3CQ9C0K3 210 aaPredicted RBP8.15□□□□□ -1.1
CLN3-257ENST00000637110 NAGKQ9UJ70 344 aa8.15□□□□□ -1.1
CLN3-257ENST00000637110 TP53TG3Q9ULZ0 132 aa8.15□□□□□ -1.1
CLN3-257ENST00000637110 KLF12Q9Y4X4 402 aa8.15□□□□□ -1.1
CLN3-257ENST00000637110 DMBT1Q9UGM3 2413 aaPredicted RBP8.15□□□□□ -1.1
CLN3-257ENST00000637110 TRBV7-9A0A0J9YWB2 115 aa8.14□□□□□ -1.11
CLN3-257ENST00000637110 GNG5P63218 68 aa8.14□□□□□ -1.11
CLN3-257ENST00000637110 SERF2P84101 59 aa8.14□□□□□ -1.11
CLN3-257ENST00000637110 ZNF415Q09FC8 603 aa8.14□□□□□ -1.11
CLN3-257ENST00000637110 RPL7L1Q6DKI1 246 aaKnown RBP8.14□□□□□ -1.11
CLN3-257ENST00000637110 Q6ZQT7 251 aa8.14□□□□□ -1.11
CLN3-257ENST00000637110 LINC00612Q8N6U2 182 aa8.14□□□□□ -1.11
CLN3-257ENST00000637110 C11orf72Q8NBR9 251 aa8.14□□□□□ -1.11
CLN3-257ENST00000637110 RAB24Q969Q5 203 aa8.14□□□□□ -1.11
CLN3-257ENST00000637110 SH3BGRL3Q9H299 93 aa8.14□□□□□ -1.11
CLN3-257ENST00000637110 TMPRSS5Q9H3S3 457 aa8.14□□□□□ -1.11
CLN3-257ENST00000637110 MRPL16Q9NX20 251 aaKnown RBP8.14□□□□□ -1.11
CLN3-257ENST00000637110 IGHV3-53P01767 116 aa8.13□□□□□ -1.11
CLN3-257ENST00000637110 STAG3L2P0CL84 134 aa8.13□□□□□ -1.11
CLN3-257ENST00000637110 STAG3L3P0CL85 134 aa8.13□□□□□ -1.11
CLN3-257ENST00000637110 HOXA5P20719 270 aa8.13□□□□□ -1.11
CLN3-257ENST00000637110 GCHFRP30047 84 aa8.13□□□□□ -1.11
CLN3-257ENST00000637110 TCL1AP56279 114 aa8.13□□□□□ -1.11
CLN3-257ENST00000637110 LGALS9BQ3B8N2 356 aa8.13□□□□□ -1.11
CLN3-257ENST00000637110 IBA57Q5T440 356 aaKnown RBP8.13□□□□□ -1.11
CLN3-257ENST00000637110 FAM159AQ6UWV7 190 aa8.13□□□□□ -1.11
CLN3-257ENST00000637110 Q8N1X5 172 aa8.13□□□□□ -1.11
CLN3-257ENST00000637110 SGK494Q96LW2 274 aa8.13□□□□□ -1.11
CLN3-257ENST00000637110 TNFSF18Q9UNG2 199 aa8.13□□□□□ -1.11
CLN3-257ENST00000637110 K7EQM0 130 aa8.12□□□□□ -1.11
CLN3-257ENST00000637110 ARPC5O15511 151 aa8.12□□□□□ -1.11
CLN3-257ENST00000637110 CXorf1O96002 111 aa8.12□□□□□ -1.11
CLN3-257ENST00000637110 FAM3BP58499 235 aaPredicted RBP8.12□□□□□ -1.11
CLN3-257ENST00000637110 TMEM183BQ1AE95 376 aa8.12□□□□□ -1.11
CLN3-257ENST00000637110 TMEM183AQ8IXX5 376 aa8.12□□□□□ -1.11
CLN3-257ENST00000637110 NDFIP1Q9BT67 221 aa8.12□□□□□ -1.11
CLN3-257ENST00000637110 TREM1Q9NP99 234 aa8.12□□□□□ -1.11
CLN3-257ENST00000637110 TMEM167BQ9NRX6 74 aa8.12□□□□□ -1.11
CLN3-257ENST00000637110 LENEPQ9Y5L5 61 aa8.12□□□□□ -1.11
CLN3-257ENST00000637110 TRGV11A0A075B6L2 103 aa8.11□□□□□ -1.11
CLN3-257ENST00000637110 TRAV8-1A0A0A6YYK1 113 aa8.11□□□□□ -1.11
CLN3-257ENST00000637110 RNF222A6NCQ9 220 aa8.11□□□□□ -1.11
CLN3-257ENST00000637110 C16orf90A8MZG2 172 aa8.11□□□□□ -1.11
CLN3-257ENST00000637110 F6UZH7 168 aa8.11□□□□□ -1.11
CLN3-257ENST00000637110 SPINK4O60575 86 aa8.11□□□□□ -1.11
CLN3-257ENST00000637110 AKR1C8PQ5T2L2 129 aa8.11□□□□□ -1.11
CLN3-257ENST00000637110 SSX7Q7RTT5 188 aa8.11□□□□□ -1.11
CLN3-257ENST00000637110 TMED6Q8WW62 240 aa8.11□□□□□ -1.11
CLN3-257ENST00000637110 ST6GAL2Q96JF0 529 aa8.11□□□□□ -1.11
CLN3-257ENST00000637110 TRAV21A0A0B4J279 112 aa8.1□□□□□ -1.11
CLN3-257ENST00000637110 SMLR1H3BR10 107 aa8.1□□□□□ -1.11
CLN3-257ENST00000637110 TAAR5O14804 337 aa8.1□□□□□ -1.11
CLN3-257ENST00000637110 SUMO1P63165 101 aaKnown RBP8.1□□□□□ -1.11
CLN3-257ENST00000637110 Q6AWC8 147 aa8.1□□□□□ -1.11
CLN3-257ENST00000637110 ARL6IP6Q8N6S5 226 aa8.1□□□□□ -1.11
CLN3-257ENST00000637110 C5orf17Q8NAS9 161 aa8.1□□□□□ -1.11
CLN3-257ENST00000637110 SCRT2Q9NQ03 307 aa8.1□□□□□ -1.11
CLN3-257ENST00000637110 MDFICQ9P1T7 246 aa8.1□□□□□ -1.11
CLN3-257ENST00000637110 LINC00588Q9Y4M8 146 aa8.1□□□□□ -1.11
CLN3-257ENST00000637110 NACAE9PAV3 2078 aa8.09□□□□□ -1.11
CLN3-257ENST00000637110 TRGV4A0A0C4DH28 118 aa8.09□□□□□ -1.11
CLN3-257ENST00000637110 SERTM2A0A1B0GWG4 89 aa8.09□□□□□ -1.11
CLN3-257ENST00000637110 PAX4O43316 350 aa8.09□□□□□ -1.11
CLN3-257ENST00000637110 IFNA7P01567 189 aa8.09□□□□□ -1.11
CLN3-257ENST00000637110 TCRAP04437 139 aa8.09□□□□□ -1.11
CLN3-257ENST00000637110 C1orf134Q5TEV5 83 aa8.09□□□□□ -1.11
CLN3-257ENST00000637110 PRNTQ86SH4 94 aa8.09□□□□□ -1.11
CLN3-257ENST00000637110 CTXND1A0A1B0GTU2 59 aa8.08□□□□□ -1.12
CLN3-257ENST00000637110 GNRH2O43555 120 aa8.08□□□□□ -1.12
CLN3-257ENST00000637110 FGF8P55075 233 aaPredicted RBP8.08□□□□□ -1.12
CLN3-257ENST00000637110 UBE2G2P60604 165 aa8.08□□□□□ -1.12
CLN3-257ENST00000637110 ZFP69Q49AA0 526 aa8.08□□□□□ -1.12
CLN3-257ENST00000637110 Q6ZR54 194 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms