RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 TRAV34A0A0B4J273 112 aa13.79□□□□□ -0.2
SQSTM1-216ENST00000626660 LOC102723971A0A1B0GUV8 181 aa13.79□□□□□ -0.2
SQSTM1-216ENST00000626660 TMEM189A5PLL7 270 aa13.79□□□□□ -0.2
SQSTM1-216ENST00000626660 ZNF705GA8MUZ8 300 aaPredicted RBP13.79□□□□□ -0.2
SQSTM1-216ENST00000626660 IGLV2-11P01706 119 aa13.79□□□□□ -0.2
SQSTM1-216ENST00000626660 BCL2P10415 239 aa13.79□□□□□ -0.2
SQSTM1-216ENST00000626660 HTN1P15515 57 aa13.79□□□□□ -0.2
SQSTM1-216ENST00000626660 SAPCD1Q5SSQ6 148 aa13.79□□□□□ -0.2
SQSTM1-216ENST00000626660 PRR9Q5T870 116 aa13.79□□□□□ -0.2
SQSTM1-216ENST00000626660 FMC1Q96HJ9 113 aa13.79□□□□□ -0.2
SQSTM1-216ENST00000626660 LINC00479Q96M42 142 aa13.79□□□□□ -0.2
SQSTM1-216ENST00000626660 PYGO2Q9BRQ0 406 aa13.78□□□□□ -0.2
SQSTM1-216ENST00000626660 SCO2A0A1W2PP80 73 aa13.77□□□□□ -0.21
SQSTM1-216ENST00000626660 ZNF324O75467 553 aaPredicted RBP13.77□□□□□ -0.21
SQSTM1-216ENST00000626660 S100A9P06702 114 aaKnown RBP13.77□□□□□ -0.21
SQSTM1-216ENST00000626660 MEF2BQ02080 365 aaPredicted RBP13.77□□□□□ -0.21
SQSTM1-216ENST00000626660 Q86TA4 180 aa13.77□□□□□ -0.21
SQSTM1-216ENST00000626660 LYPD6BQ8NI32 183 aa13.77□□□□□ -0.21
SQSTM1-216ENST00000626660 IL17DQ8TAD2 202 aa13.77□□□□□ -0.21
SQSTM1-216ENST00000626660 TVP23CQ96ET8 276 aa13.77□□□□□ -0.21
SQSTM1-216ENST00000626660 VAX2Q9UIW0 290 aa13.77□□□□□ -0.21
SQSTM1-216ENST00000626660 KLF12Q9Y4X4 402 aa13.77□□□□□ -0.21
SQSTM1-216ENST00000626660 RGS13O14921 159 aa13.76□□□□□ -0.21
SQSTM1-216ENST00000626660 EMP1P54849 157 aa13.76□□□□□ -0.21
SQSTM1-216ENST00000626660 TMEM183BQ1AE95 376 aa13.76□□□□□ -0.21
SQSTM1-216ENST00000626660 SMUG1Q53HV7 270 aa13.76□□□□□ -0.21
SQSTM1-216ENST00000626660 TRBV6-1A0A0K0K1D8 114 aa13.75□□□□□ -0.21
SQSTM1-216ENST00000626660 PDE6DO43924 150 aa13.75□□□□□ -0.21
SQSTM1-216ENST00000626660 Q6AWC8 147 aa13.75□□□□□ -0.21
SQSTM1-216ENST00000626660 ZNF493Q6ZR52 646 aa13.75□□□□□ -0.21
SQSTM1-216ENST00000626660 C2CD4CQ8TF44 421 aa13.75□□□□□ -0.21
SQSTM1-216ENST00000626660 C16orf74Q96GX8 76 aa13.75□□□□□ -0.21
SQSTM1-216ENST00000626660 ZFP30Q9Y2G7 519 aa13.75□□□□□ -0.21
SQSTM1-216ENST00000626660 TRAV21A0A0B4J279 112 aa13.74□□□□□ -0.21
SQSTM1-216ENST00000626660 EIF4E3Q8N5X7 224 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-216ENST00000626660 C11orf45Q8TAV5 145 aa13.74□□□□□ -0.21
SQSTM1-216ENST00000626660 TMEM263Q8WUH6 116 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-216ENST00000626660 C11orf52Q96A22 123 aa13.74□□□□□ -0.21
SQSTM1-216ENST00000626660 C8orf49Q96NF6 230 aa13.74□□□□□ -0.21
SQSTM1-216ENST00000626660 LINC00467Q9BRT7 94 aa13.74□□□□□ -0.21
SQSTM1-216ENST00000626660 KMT2CQ8NEZ4 4911 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-216ENST00000626660 IGHV1OR15-1A0A075B7D0 117 aa13.73□□□□□ -0.21
SQSTM1-216ENST00000626660 TEX48A0A1B0GUV7 120 aa13.73□□□□□ -0.21
SQSTM1-216ENST00000626660 RBFOX3A6NFN3 312 aa13.73□□□□□ -0.21
SQSTM1-216ENST00000626660 CBY3A6NI87 242 aa13.73□□□□□ -0.21
SQSTM1-216ENST00000626660 GCGP01275 180 aa13.73□□□□□ -0.21
SQSTM1-216ENST00000626660 PRM2P04554 102 aa13.73□□□□□ -0.21
SQSTM1-216ENST00000626660 AZU1P20160 251 aa13.73□□□□□ -0.21
SQSTM1-216ENST00000626660 MUC7Q8TAX7 377 aa13.73□□□□□ -0.21
SQSTM1-216ENST00000626660 CXorf65A6NEN9 183 aa13.72□□□□□ -0.21
SQSTM1-216ENST00000626660 SPART-AS1P0CW21 52 aa13.72□□□□□ -0.21
SQSTM1-216ENST00000626660 FAM159AQ6UWV7 190 aa13.72□□□□□ -0.21
SQSTM1-216ENST00000626660 LTAP01374 205 aa13.71□□□□□ -0.21
SQSTM1-216ENST00000626660 ANXA2RQ3ZCQ2 193 aa13.71□□□□□ -0.21
SQSTM1-216ENST00000626660 ZNF506Q5JVG8 444 aa13.71□□□□□ -0.21
SQSTM1-216ENST00000626660 MUC21Q5SSG8 566 aa13.71□□□□□ -0.21
SQSTM1-216ENST00000626660 Q6ZQT7 251 aa13.71□□□□□ -0.21
SQSTM1-216ENST00000626660 RNASE8Q8TDE3 154 aaKnown RBP13.71□□□□□ -0.21
SQSTM1-216ENST00000626660 PCNPQ8WW12 178 aaKnown RBP13.71□□□□□ -0.21
SQSTM1-216ENST00000626660 EIF5A2Q9GZV4 153 aaKnown RBP13.71□□□□□ -0.21
SQSTM1-216ENST00000626660 MED9Q9NWA0 146 aa13.71□□□□□ -0.21
SQSTM1-216ENST00000626660 NAGKQ9UJ70 344 aa13.71□□□□□ -0.21
SQSTM1-216ENST00000626660 SNURFLB1AK76 121 aa13.7□□□□□ -0.22
SQSTM1-216ENST00000626660 PFN1P07737 140 aaKnown RBP13.7□□□□□ -0.22
SQSTM1-216ENST00000626660 RPL35P42766 123 aaKnown RBP13.7□□□□□ -0.22
SQSTM1-216ENST00000626660 RAB14P61106 215 aa13.7□□□□□ -0.22
SQSTM1-216ENST00000626660 TOR2AQ5JU69 321 aa13.7□□□□□ -0.22
SQSTM1-216ENST00000626660 LYRM9A8MSI8 78 aa13.69□□□□□ -0.22
SQSTM1-216ENST00000626660 ZNF80P51504 273 aaPredicted RBP13.69□□□□□ -0.22
SQSTM1-216ENST00000626660 NANOS2P60321 138 aaKnown RBP13.69□□□□□ -0.22
SQSTM1-216ENST00000626660 FAM222AQ5U5X8 452 aa13.69□□□□□ -0.22
SQSTM1-216ENST00000626660 BAGE2Q86Y30 109 aa13.69□□□□□ -0.22
SQSTM1-216ENST00000626660 TMEM183AQ8IXX5 376 aa13.69□□□□□ -0.22
SQSTM1-216ENST00000626660 KCNS1Q96KK3 526 aa13.69□□□□□ -0.22
SQSTM1-216ENST00000626660 FAM210AQ96ND0 272 aa13.69□□□□□ -0.22
SQSTM1-216ENST00000626660 DKK2Q9UBU2 259 aa13.69□□□□□ -0.22
SQSTM1-216ENST00000626660 CELA1Q9UNI1 258 aa13.69□□□□□ -0.22
SQSTM1-216ENST00000626660 TIMM8BQ9Y5J9 83 aaPredicted RBP13.69□□□□□ -0.22
SQSTM1-216ENST00000626660 TRGV11A0A075B6L2 103 aa13.68□□□□□ -0.22
SQSTM1-216ENST00000626660 ZNF767PQ75MW2 155 aa13.68□□□□□ -0.22
SQSTM1-216ENST00000626660 COX8CQ7Z4L0 72 aa13.68□□□□□ -0.22
SQSTM1-216ENST00000626660 ZC2HC1AQ96GY0 325 aa13.68□□□□□ -0.22
SQSTM1-216ENST00000626660 DERL1Q9BUN8 251 aa13.68□□□□□ -0.22
SQSTM1-216ENST00000626660 PLAC8L1A1L4L8 177 aa13.67□□□□□ -0.22
SQSTM1-216ENST00000626660 FABP5P3A8MUU1 101 aa13.67□□□□□ -0.22
SQSTM1-216ENST00000626660 C3orf84H3BNL1 204 aa13.67□□□□□ -0.22
SQSTM1-216ENST00000626660 TDRG1Q3Y452 100 aa13.67□□□□□ -0.22
SQSTM1-216ENST00000626660 IBA57Q5T440 356 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-216ENST00000626660 FAM162BQ5T6X4 162 aa13.67□□□□□ -0.22
SQSTM1-216ENST00000626660 NHLRC2Q8NBF2 726 aa13.67□□□□□ -0.22
SQSTM1-216ENST00000626660 SDF2L1Q9HCN8 221 aa13.67□□□□□ -0.22
SQSTM1-216ENST00000626660 NOP10Q9NPE3 64 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-216ENST00000626660 TMEM250H0YL14 139 aa13.66□□□□□ -0.22
SQSTM1-216ENST00000626660 ZNF415Q09FC8 603 aa13.66□□□□□ -0.22
SQSTM1-216ENST00000626660 GSN-AS1Q9NRJ2 163 aa13.66□□□□□ -0.22
SQSTM1-216ENST00000626660 TP53TG3Q9ULZ0 132 aa13.66□□□□□ -0.22
SQSTM1-216ENST00000626660 GNG4P50150 75 aa13.65□□□□□ -0.22
SQSTM1-216ENST00000626660 DAD1P61803 113 aa13.65□□□□□ -0.22
SQSTM1-216ENST00000626660 CENPWQ5EE01 88 aa13.65□□□□□ -0.22
SQSTM1-216ENST00000626660 ZFAND6Q6FIF0 208 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms