RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 ATP5G3P48201 142 aa13.78□□□□□ -0.2
UPF1-212ENST00000601689 ANXA2RQ3ZCQ2 193 aa13.78□□□□□ -0.2
UPF1-212ENST00000601689 TMUB2Q71RG4 321 aa13.78□□□□□ -0.2
UPF1-212ENST00000601689 MAP1LC3B2A6NCE7 125 aa13.77□□□□□ -0.21
UPF1-212ENST00000601689 IFNA7P01567 189 aa13.77□□□□□ -0.21
UPF1-212ENST00000601689 ZFP69Q49AA0 526 aa13.77□□□□□ -0.21
UPF1-212ENST00000601689 FAM159AQ6UWV7 190 aa13.77□□□□□ -0.21
UPF1-212ENST00000601689 MAP1LC3BQ9GZQ8 125 aa13.77□□□□□ -0.21
UPF1-212ENST00000601689 TREM1Q9NP99 234 aa13.77□□□□□ -0.21
UPF1-212ENST00000601689 PLA2G2EQ9NZK7 142 aa13.77□□□□□ -0.21
UPF1-212ENST00000601689 APLNQ9ULZ1 77 aa13.77□□□□□ -0.21
UPF1-212ENST00000601689 IGHV1OR15-1A0A075B7D0 117 aa13.76□□□□□ -0.21
UPF1-212ENST00000601689 TCRAP04437 139 aa13.76□□□□□ -0.21
UPF1-212ENST00000601689 PPT1P50897 306 aa13.76□□□□□ -0.21
UPF1-212ENST00000601689 DPPA3Q6W0C5 159 aa13.76□□□□□ -0.21
UPF1-212ENST00000601689 EPDR1Q9UM22 224 aa13.76□□□□□ -0.21
UPF1-212ENST00000601689 TRAV21A0A0B4J279 112 aa13.75□□□□□ -0.21
UPF1-212ENST00000601689 PLAC8L1A1L4L8 177 aa13.75□□□□□ -0.21
UPF1-212ENST00000601689 F6UZH7 168 aa13.75□□□□□ -0.21
UPF1-212ENST00000601689 P0DMU3 169 aa13.75□□□□□ -0.21
UPF1-212ENST00000601689 FAM231AP0DMU4 169 aa13.75□□□□□ -0.21
UPF1-212ENST00000601689 FAM231CP0DMU5 169 aa13.75□□□□□ -0.21
UPF1-212ENST00000601689 FGF8P55075 233 aaPredicted RBP13.75□□□□□ -0.21
UPF1-212ENST00000601689 GNG5P63218 68 aa13.75□□□□□ -0.21
UPF1-212ENST00000601689 DAZ2Q13117 558 aaKnown RBP13.75□□□□□ -0.21
UPF1-212ENST00000601689 ZNF726P1Q15940 193 aa13.75□□□□□ -0.21
UPF1-212ENST00000601689 IBA57Q5T440 356 aaKnown RBP13.75□□□□□ -0.21
UPF1-212ENST00000601689 AKAP14Q86UN6 197 aa13.75□□□□□ -0.21
UPF1-212ENST00000601689 CYB561D1Q8N8Q1 229 aa13.75□□□□□ -0.21
UPF1-212ENST00000601689 ATG101Q9BSB4 218 aa13.75□□□□□ -0.21
UPF1-212ENST00000601689 PLECQ15149 4684 aaKnown RBP13.75□□□□□ -0.21
UPF1-212ENST00000601689 DYNC2H1Q8NCM8 4307 aaKnown RBP13.74□□□□□ -0.21
UPF1-212ENST00000601689 F5H768 121 aa13.74□□□□□ -0.21
UPF1-212ENST00000601689 UBE2G2P60604 165 aa13.74□□□□□ -0.21
UPF1-212ENST00000601689 ZNF415Q09FC8 603 aa13.74□□□□□ -0.21
UPF1-212ENST00000601689 Q6AWC8 147 aa13.74□□□□□ -0.21
UPF1-212ENST00000601689 SSX7Q7RTT5 188 aa13.74□□□□□ -0.21
UPF1-212ENST00000601689 C15orf53Q8NAA6 179 aa13.74□□□□□ -0.21
UPF1-212ENST00000601689 TRGV11A0A075B6L2 103 aa13.73□□□□□ -0.21
UPF1-212ENST00000601689 TEX46H3BTG2 121 aa13.73□□□□□ -0.21
UPF1-212ENST00000601689 C1QBP02746 253 aa13.73□□□□□ -0.21
UPF1-212ENST00000601689 SAPCD1Q5SSQ6 148 aa13.73□□□□□ -0.21
UPF1-212ENST00000601689 FAM213BQ8TBF2 198 aa13.73□□□□□ -0.21
UPF1-212ENST00000601689 HIST1H2BAQ96A08 127 aa13.73□□□□□ -0.21
UPF1-212ENST00000601689 hCG_2014768A0A024R1R8 64 aa13.72□□□□□ -0.21
UPF1-212ENST00000601689 TRGV2A0A075B6R0 118 aa13.72□□□□□ -0.21
UPF1-212ENST00000601689 GAGE12BA1L429 117 aa13.72□□□□□ -0.21
UPF1-212ENST00000601689 GGTLC3B5MD39 225 aa13.72□□□□□ -0.21
UPF1-212ENST00000601689 GAGE7O76087 117 aa13.72□□□□□ -0.21
UPF1-212ENST00000601689 GAGE12FP0CL80 117 aa13.72□□□□□ -0.21
UPF1-212ENST00000601689 GAGE12GP0CL81 117 aa13.72□□□□□ -0.21
UPF1-212ENST00000601689 GAGE12IP0CL82 117 aa13.72□□□□□ -0.21
UPF1-212ENST00000601689 FLI1Q01543 452 aaPredicted RBP13.72□□□□□ -0.21
UPF1-212ENST00000601689 LGALSLQ3ZCW2 172 aaPredicted RBP13.72□□□□□ -0.21
UPF1-212ENST00000601689 TMEM75Q8N9X5 138 aa13.72□□□□□ -0.21
UPF1-212ENST00000601689 SFT2D1Q8WV19 159 aa13.72□□□□□ -0.21
UPF1-212ENST00000601689 TMPRSS5Q9H3S3 457 aa13.72□□□□□ -0.21
UPF1-212ENST00000601689 GSN-AS1Q9NRJ2 163 aa13.72□□□□□ -0.21
UPF1-212ENST00000601689 NAGKQ9UJ70 344 aa13.72□□□□□ -0.21
UPF1-212ENST00000601689 PSG8Q9UQ74 426 aa13.72□□□□□ -0.21
UPF1-212ENST00000601689 TRAV8-1A0A0A6YYK1 113 aa13.71□□□□□ -0.21
UPF1-212ENST00000601689 RAB5CP51148 216 aa13.71□□□□□ -0.21
UPF1-212ENST00000601689 TCL1AP56279 114 aa13.71□□□□□ -0.21
UPF1-212ENST00000601689 MUC21Q5SSG8 566 aa13.71□□□□□ -0.21
UPF1-212ENST00000601689 PRR9Q5T870 116 aa13.71□□□□□ -0.21
UPF1-212ENST00000601689 CST9LP1Q5W188 147 aa13.71□□□□□ -0.21
UPF1-212ENST00000601689 KCNS1Q96KK3 526 aa13.71□□□□□ -0.21
UPF1-212ENST00000601689 TCEAL7Q9BRU2 100 aa13.71□□□□□ -0.21
UPF1-212ENST00000601689 ARL2-SNX15V9GYD0 113 aa13.71□□□□□ -0.21
UPF1-212ENST00000601689 SACSQ9NZJ4 4579 aa13.71□□□□□ -0.21
UPF1-212ENST00000601689 TRGV1A0A0A0MS02 117 aa13.7□□□□□ -0.22
UPF1-212ENST00000601689 FAM74A7A6NL05 159 aa13.7□□□□□ -0.22
UPF1-212ENST00000601689 H2AFB1P0C5Y9 115 aa13.7□□□□□ -0.22
UPF1-212ENST00000601689 SMUG1Q53HV7 270 aa13.7□□□□□ -0.22
UPF1-212ENST00000601689 TMEM88Q6PEY1 159 aa13.7□□□□□ -0.22
UPF1-212ENST00000601689 PRNTQ86SH4 94 aa13.7□□□□□ -0.22
UPF1-212ENST00000601689 UBE2DNLQ8IWF7 75 aa13.7□□□□□ -0.22
UPF1-212ENST00000601689 SGK494Q96LW2 274 aa13.7□□□□□ -0.22
UPF1-212ENST00000601689 FHITP49789 147 aa13.69□□□□□ -0.22
UPF1-212ENST00000601689 OR5I1Q13606 314 aa13.69□□□□□ -0.22
UPF1-212ENST00000601689 LGALS9BQ3B8N2 356 aa13.69□□□□□ -0.22
UPF1-212ENST00000601689 MBD3L1Q8WWY6 194 aa13.69□□□□□ -0.22
UPF1-212ENST00000601689 SDF2L1Q9HCN8 221 aa13.69□□□□□ -0.22
UPF1-212ENST00000601689 PEX7O00628 323 aa13.68□□□□□ -0.22
UPF1-212ENST00000601689 UBE2G1P62253 170 aa13.68□□□□□ -0.22
UPF1-212ENST00000601689 SLC51BQ86UW2 128 aa13.68□□□□□ -0.22
UPF1-212ENST00000601689 LINC00612Q8N6U2 182 aa13.68□□□□□ -0.22
UPF1-212ENST00000601689 C11orf72Q8NBR9 251 aa13.68□□□□□ -0.22
UPF1-212ENST00000601689 SPXQ9BT56 116 aa13.68□□□□□ -0.22
UPF1-212ENST00000601689 KLF12Q9Y4X4 402 aa13.68□□□□□ -0.22
UPF1-212ENST00000601689 ALMS1Q8TCU4 4167 aa13.68□□□□□ -0.22
UPF1-212ENST00000601689 RYR3Q15413 4870 aa13.67□□□□□ -0.22
UPF1-212ENST00000601689 TMEM183BQ1AE95 376 aa13.67□□□□□ -0.22
UPF1-212ENST00000601689 TMEM183AQ8IXX5 376 aa13.67□□□□□ -0.22
UPF1-212ENST00000601689 TP53TG3Q9ULZ0 132 aa13.67□□□□□ -0.22
UPF1-212ENST00000601689 SPINK4O60575 86 aa13.66□□□□□ -0.22
UPF1-212ENST00000601689 GCGP01275 180 aa13.66□□□□□ -0.22
UPF1-212ENST00000601689 TDRG1Q3Y452 100 aa13.66□□□□□ -0.22
UPF1-212ENST00000601689 Q6ZTI0 123 aa13.66□□□□□ -0.22
UPF1-212ENST00000601689 C18orf15Q96N68 181 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms