RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 K7EN84 100 aa9.32□□□□□ -0.92
UPF1-208ENST00000600012 LTAP01374 205 aa9.32□□□□□ -0.92
UPF1-208ENST00000600012 MGST1P10620 155 aaKnown RBP9.32□□□□□ -0.92
UPF1-208ENST00000600012 ZNF124Q15973 351 aa9.32□□□□□ -0.92
UPF1-208ENST00000600012 ODF3L2Q3SX64 289 aa9.32□□□□□ -0.92
UPF1-208ENST00000600012 ATRAIDQ6UW56 229 aa9.32□□□□□ -0.92
UPF1-208ENST00000600012 LINC01551Q86U37 167 aa9.32□□□□□ -0.92
UPF1-208ENST00000600012 CLRN3Q8NCR9 226 aa9.32□□□□□ -0.92
UPF1-208ENST00000600012 OR10J6PQ8NGY7 276 aa9.32□□□□□ -0.92
UPF1-208ENST00000600012 AGPAT4-IT1Q9H0P7 198 aa9.32□□□□□ -0.92
UPF1-208ENST00000600012 KNCNA6PVL3 124 aa9.31□□□□□ -0.92
UPF1-208ENST00000600012 PNRC1Q12796 327 aaPredicted RBP9.31□□□□□ -0.92
UPF1-208ENST00000600012 OR5I1Q13606 314 aa9.31□□□□□ -0.92
UPF1-208ENST00000600012 TMEM78Q5T7P6 136 aa9.31□□□□□ -0.92
UPF1-208ENST00000600012 C9orf47Q6ZRZ4 202 aa9.31□□□□□ -0.92
UPF1-208ENST00000600012 C8orf49Q96NF6 230 aa9.31□□□□□ -0.92
UPF1-208ENST00000600012 A0A0J9YX75 114 aa9.3□□□□□ -0.92
UPF1-208ENST00000600012 FBLL1A6NHQ2 334 aaKnown RBP9.3□□□□□ -0.92
UPF1-208ENST00000600012 SNAPINO95295 136 aa9.3□□□□□ -0.92
UPF1-208ENST00000600012 IGKV3-20P01619 116 aa9.3□□□□□ -0.92
UPF1-208ENST00000600012 ZNF138P52744 262 aa9.3□□□□□ -0.92
UPF1-208ENST00000600012 PRR27Q6MZM9 219 aa9.3□□□□□ -0.92
UPF1-208ENST00000600012 EBLN2Q6P2I7 272 aa9.3□□□□□ -0.92
UPF1-208ENST00000600012 APRG1Q8IVJ8 170 aa9.3□□□□□ -0.92
UPF1-208ENST00000600012 TMEM183AQ8IXX5 376 aa9.3□□□□□ -0.92
UPF1-208ENST00000600012 ISOC2Q96AB3 205 aa9.3□□□□□ -0.92
UPF1-208ENST00000600012 ZC2HC1AQ96GY0 325 aa9.3□□□□□ -0.92
UPF1-208ENST00000600012 MLST8Q9BVC4 326 aa9.3□□□□□ -0.92
UPF1-208ENST00000600012 SAV1Q9H4B6 383 aaPredicted RBP9.3□□□□□ -0.92
UPF1-208ENST00000600012 LY96Q9Y6Y9 160 aa9.3□□□□□ -0.92
UPF1-208ENST00000600012 ALMS1Q8TCU4 4167 aa9.3□□□□□ -0.92
UPF1-208ENST00000600012 C7orf77A4D0Y5 90 aa9.29□□□□□ -0.92
UPF1-208ENST00000600012 SCO1O75880 301 aa9.29□□□□□ -0.92
UPF1-208ENST00000600012 CT45A10P0DMU9 189 aa9.29□□□□□ -0.92
UPF1-208ENST00000600012 ACTL10Q5JWF8 245 aa9.29□□□□□ -0.92
UPF1-208ENST00000600012 FOXI2Q6ZQN5 318 aa9.29□□□□□ -0.92
UPF1-208ENST00000600012 LINC00476Q8WZB0 136 aa9.29□□□□□ -0.92
UPF1-208ENST00000600012 NDFIP1Q9BT67 221 aa9.29□□□□□ -0.92
UPF1-208ENST00000600012 ZNF492Q9P255 531 aa9.29□□□□□ -0.92
UPF1-208ENST00000600012 ZFP30Q9Y2G7 519 aa9.29□□□□□ -0.92
UPF1-208ENST00000600012 PLECQ15149 4684 aaKnown RBP9.29□□□□□ -0.92
UPF1-208ENST00000600012 LOC102724200A0A096LPH7 203 aaPredicted RBP9.28□□□□□ -0.92
UPF1-208ENST00000600012 J3KRW8 73 aa9.28□□□□□ -0.92
UPF1-208ENST00000600012 GCGP01275 180 aa9.28□□□□□ -0.92
UPF1-208ENST00000600012 OR4B1Q8NGF8 309 aa9.28□□□□□ -0.92
UPF1-208ENST00000600012 SMIM12Q96EX1 92 aa9.28□□□□□ -0.92
UPF1-208ENST00000600012 LINC00477Q96M19 166 aa9.28□□□□□ -0.92
UPF1-208ENST00000600012 OVOL2Q9BRP0 275 aa9.28□□□□□ -0.92
UPF1-208ENST00000600012 RNASE7Q9H1E1 156 aaKnown RBP9.28□□□□□ -0.92
UPF1-208ENST00000600012 RPS10P5Q9NQ39 176 aa9.28□□□□□ -0.92
UPF1-208ENST00000600012 DUSP14O95147 198 aaKnown RBP9.27□□□□□ -0.93
UPF1-208ENST00000600012 HLA-DRB4P13762 266 aa9.27□□□□□ -0.93
UPF1-208ENST00000600012 RHEBQ15382 184 aa9.27□□□□□ -0.93
UPF1-208ENST00000600012 RNF212Q495C1 297 aa9.27□□□□□ -0.93
UPF1-208ENST00000600012 SAPCD1Q5SSQ6 148 aa9.27□□□□□ -0.93
UPF1-208ENST00000600012 PRR9Q5T870 116 aa9.27□□□□□ -0.93
UPF1-208ENST00000600012 HLA-DRB4X5D2U9 266 aa9.27□□□□□ -0.93
UPF1-208ENST00000600012 CXorf65A6NEN9 183 aa9.26□□□□□ -0.93
UPF1-208ENST00000600012 H3BMM0 161 aa9.26□□□□□ -0.93
UPF1-208ENST00000600012 ZNF80P51504 273 aaPredicted RBP9.26□□□□□ -0.93
UPF1-208ENST00000600012 SMUG1Q53HV7 270 aa9.26□□□□□ -0.93
UPF1-208ENST00000600012 SFRP2Q96HF1 295 aa9.26□□□□□ -0.93
UPF1-208ENST00000600012 FAM19A4Q96LR4 140 aa9.26□□□□□ -0.93
UPF1-208ENST00000600012 PPP1R14DQ9NXH3 145 aa9.26□□□□□ -0.93
UPF1-208ENST00000600012 NUPR2A6NF83 97 aa9.25□□□□□ -0.93
UPF1-208ENST00000600012 B4DEV8 164 aa9.25□□□□□ -0.93
UPF1-208ENST00000600012 SH2D1AO60880 128 aa9.25□□□□□ -0.93
UPF1-208ENST00000600012 LY6G6CO95867 125 aa9.25□□□□□ -0.93
UPF1-208ENST00000600012 CRIP1P50238 77 aa9.25□□□□□ -0.93
UPF1-208ENST00000600012 CMC4P56277 68 aaPredicted RBP9.25□□□□□ -0.93
UPF1-208ENST00000600012 FXYD7P58549 80 aa9.25□□□□□ -0.93
UPF1-208ENST00000600012 ERVFC1-1P60608 527 aa9.25□□□□□ -0.93
UPF1-208ENST00000600012 KIR3DS1Q14943 382 aa9.25□□□□□ -0.93
UPF1-208ENST00000600012 IBA57Q5T440 356 aaKnown RBP9.25□□□□□ -0.93
UPF1-208ENST00000600012 AMTNQ6UX39 209 aa9.25□□□□□ -0.93
UPF1-208ENST00000600012 COX8CQ7Z4L0 72 aa9.25□□□□□ -0.93
UPF1-208ENST00000600012 ZFAND2AQ8N6M9 145 aa9.25□□□□□ -0.93
UPF1-208ENST00000600012 OR10G8Q8NGN5 311 aa9.25□□□□□ -0.93
UPF1-208ENST00000600012 TP53TG1Q9Y2A0 90 aa9.25□□□□□ -0.93
UPF1-208ENST00000600012 LENEPQ9Y5L5 61 aa9.25□□□□□ -0.93
UPF1-208ENST00000600012 C19orf71A6NCJ1 209 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 A8MTW9 85 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 H7BYZ3 331 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 MT-ND4LP03901 98 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 CRISP2P16562 243 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 LEPP41159 167 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 APOC4P55056 127 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 BTN1A1Q13410 526 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 SPINK13Q1W4C9 94 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 Q6ZWC4 215 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 CBLN2Q8IUK8 224 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 NUDT10Q8NFP7 164 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 NUDT11Q96G61 164 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 ODF3Q96PU9 254 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 BIN3Q9NQY0 253 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 OSTCQ9NRP0 149 aa9.24□□□□□ -0.93
UPF1-208ENST00000600012 A0A087WWC5 75 aa9.23□□□□□ -0.93
UPF1-208ENST00000600012 A0A0J9YWU9 116 aa9.23□□□□□ -0.93
UPF1-208ENST00000600012 M0R2Z0 102 aa9.23□□□□□ -0.93
UPF1-208ENST00000600012 GATCO43716 136 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms