RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 GNG5P63218 68 aa11.37□□□□□ -0.59
TRIM28-213ENST00000598355 AKR1C8PQ5T2L2 129 aa11.37□□□□□ -0.59
TRIM28-213ENST00000598355 GOLT1AQ6ZVE7 132 aa11.37□□□□□ -0.59
TRIM28-213ENST00000598355 TRAV8-1A0A0A6YYK1 113 aa11.36□□□□□ -0.59
TRIM28-213ENST00000598355 A0A1W2PRE2 83 aa11.36□□□□□ -0.59
TRIM28-213ENST00000598355 BCL2L11O43521 198 aa11.36□□□□□ -0.59
TRIM28-213ENST00000598355 TCRAP04437 139 aa11.36□□□□□ -0.59
TRIM28-213ENST00000598355 ATP5G1P05496 136 aa11.36□□□□□ -0.59
TRIM28-213ENST00000598355 DEFB130BP0DP73 79 aa11.36□□□□□ -0.59
TRIM28-213ENST00000598355 DEFB130AP0DP74 79 aa11.36□□□□□ -0.59
TRIM28-213ENST00000598355 ATP5G3P48201 142 aa11.36□□□□□ -0.59
TRIM28-213ENST00000598355 TCL1AP56279 114 aa11.36□□□□□ -0.59
TRIM28-213ENST00000598355 TCTE3Q8IZS6 198 aa11.36□□□□□ -0.59
TRIM28-213ENST00000598355 TVP23CQ96ET8 276 aa11.36□□□□□ -0.59
TRIM28-213ENST00000598355 C18orf15Q96N68 181 aa11.36□□□□□ -0.59
TRIM28-213ENST00000598355 IGHV1OR15-1A0A075B7D0 117 aa11.35□□□□□ -0.59
TRIM28-213ENST00000598355 SNURFLB1AK76 121 aa11.35□□□□□ -0.59
TRIM28-213ENST00000598355 SEC11BP0C7V7 166 aa11.35□□□□□ -0.59
TRIM28-213ENST00000598355 HTN3P15516 51 aa11.35□□□□□ -0.59
TRIM28-213ENST00000598355 TMEM88Q6PEY1 159 aa11.35□□□□□ -0.59
TRIM28-213ENST00000598355 RPH3ALQ9UNE2 315 aa11.35□□□□□ -0.59
TRIM28-213ENST00000598355 IGLV2-11P01706 119 aa11.34□□□□□ -0.59
TRIM28-213ENST00000598355 TDRG1Q3Y452 100 aa11.34□□□□□ -0.59
TRIM28-213ENST00000598355 C15orf53Q8NAA6 179 aa11.34□□□□□ -0.59
TRIM28-213ENST00000598355 GSN-AS1Q9NRJ2 163 aa11.34□□□□□ -0.59
TRIM28-213ENST00000598355 MAP1LC3B2A6NCE7 125 aa11.33□□□□□ -0.6
TRIM28-213ENST00000598355 RGS13O14921 159 aa11.33□□□□□ -0.6
TRIM28-213ENST00000598355 P0DMU3 169 aa11.33□□□□□ -0.6
TRIM28-213ENST00000598355 FAM231AP0DMU4 169 aa11.33□□□□□ -0.6
TRIM28-213ENST00000598355 FAM231CP0DMU5 169 aa11.33□□□□□ -0.6
TRIM28-213ENST00000598355 SUMO1P63165 101 aaKnown RBP11.33□□□□□ -0.6
TRIM28-213ENST00000598355 TMEM75Q8N9X5 138 aa11.33□□□□□ -0.6
TRIM28-213ENST00000598355 STOML3Q8TAV4 291 aa11.33□□□□□ -0.6
TRIM28-213ENST00000598355 ATG101Q9BSB4 218 aa11.33□□□□□ -0.6
TRIM28-213ENST00000598355 MAP1LC3BQ9GZQ8 125 aa11.33□□□□□ -0.6
TRIM28-213ENST00000598355 TMPRSS5Q9H3S3 457 aa11.33□□□□□ -0.6
TRIM28-213ENST00000598355 TP53TG3Q9ULZ0 132 aa11.33□□□□□ -0.6
TRIM28-213ENST00000598355 EPDR1Q9UM22 224 aa11.33□□□□□ -0.6
TRIM28-213ENST00000598355 KANTRA0A1W2PQU2 76 aa11.32□□□□□ -0.6
TRIM28-213ENST00000598355 UMAD1C9J7I0 102 aa11.32□□□□□ -0.6
TRIM28-213ENST00000598355 SPINK4O60575 86 aa11.32□□□□□ -0.6
TRIM28-213ENST00000598355 Q6ZTI0 123 aa11.32□□□□□ -0.6
TRIM28-213ENST00000598355 CYB561D1Q8N8Q1 229 aa11.32□□□□□ -0.6
TRIM28-213ENST00000598355 ZNF471Q9BX82 626 aaPredicted RBP11.32□□□□□ -0.6
TRIM28-213ENST00000598355 KLF12Q9Y4X4 402 aa11.32□□□□□ -0.6
TRIM28-213ENST00000598355 ARL2-SNX15V9GYD0 113 aa11.32□□□□□ -0.6
TRIM28-213ENST00000598355 FRAS1Q86XX4 4008 aa11.31□□□□□ -0.6
TRIM28-213ENST00000598355 GAGE12BA1L429 117 aa11.31□□□□□ -0.6
TRIM28-213ENST00000598355 FBLL1A6NHQ2 334 aaKnown RBP11.31□□□□□ -0.6
TRIM28-213ENST00000598355 FAM74A7A6NL05 159 aa11.31□□□□□ -0.6
TRIM28-213ENST00000598355 GAGE7O76087 117 aa11.31□□□□□ -0.6
TRIM28-213ENST00000598355 GAGE12FP0CL80 117 aa11.31□□□□□ -0.6
TRIM28-213ENST00000598355 GAGE12GP0CL81 117 aa11.31□□□□□ -0.6
TRIM28-213ENST00000598355 GAGE12IP0CL82 117 aa11.31□□□□□ -0.6
TRIM28-213ENST00000598355 FHITP49789 147 aa11.31□□□□□ -0.6
TRIM28-213ENST00000598355 FGF8P55075 233 aaPredicted RBP11.31□□□□□ -0.6
TRIM28-213ENST00000598355 TMUB2Q71RG4 321 aa11.31□□□□□ -0.6
TRIM28-213ENST00000598355 NKX6-2Q9C056 277 aaPredicted RBP11.31□□□□□ -0.6
TRIM28-213ENST00000598355 TREM1Q9NP99 234 aa11.31□□□□□ -0.6
TRIM28-213ENST00000598355 F5H768 121 aa11.3□□□□□ -0.6
TRIM28-213ENST00000598355 F6UZH7 168 aa11.3□□□□□ -0.6
TRIM28-213ENST00000598355 K7EQM0 130 aa11.3□□□□□ -0.6
TRIM28-213ENST00000598355 EIF5AP63241 154 aaKnown RBP11.3□□□□□ -0.6
TRIM28-213ENST00000598355 FLI1Q01543 452 aaPredicted RBP11.3□□□□□ -0.6
TRIM28-213ENST00000598355 ZNF415Q09FC8 603 aa11.3□□□□□ -0.6
TRIM28-213ENST00000598355 LGALS9BQ3B8N2 356 aa11.3□□□□□ -0.6
TRIM28-213ENST00000598355 POM121L12Q8N7R1 296 aa11.3□□□□□ -0.6
TRIM28-213ENST00000598355 MBD3L1Q8WWY6 194 aa11.3□□□□□ -0.6
TRIM28-213ENST00000598355 PSG8Q9UQ74 426 aa11.3□□□□□ -0.6
TRIM28-213ENST00000598355 TRAV21A0A0B4J279 112 aa11.29□□□□□ -0.6
TRIM28-213ENST00000598355 C1QBP02746 253 aa11.29□□□□□ -0.6
TRIM28-213ENST00000598355 HOXA5P20719 270 aa11.29□□□□□ -0.6
TRIM28-213ENST00000598355 MUC21Q5SSG8 566 aa11.29□□□□□ -0.6
TRIM28-213ENST00000598355 DPPA3Q6W0C5 159 aa11.29□□□□□ -0.6
TRIM28-213ENST00000598355 IQCF2Q8IXL9 164 aa11.29□□□□□ -0.6
TRIM28-213ENST00000598355 NDFIP1Q9BT67 221 aa11.29□□□□□ -0.6
TRIM28-213ENST00000598355 TRGV11A0A075B6L2 103 aa11.28□□□□□ -0.6
TRIM28-213ENST00000598355 H3BNG1 76 aa11.28□□□□□ -0.6
TRIM28-213ENST00000598355 TPT1P13693 172 aaKnown RBP11.28□□□□□ -0.6
TRIM28-213ENST00000598355 LGALSLQ3ZCW2 172 aaPredicted RBP11.28□□□□□ -0.6
TRIM28-213ENST00000598355 RNF212Q495C1 297 aa11.28□□□□□ -0.6
TRIM28-213ENST00000598355 SGK494Q96LW2 274 aa11.28□□□□□ -0.6
TRIM28-213ENST00000598355 C8orf49Q96NF6 230 aa11.28□□□□□ -0.6
TRIM28-213ENST00000598355 TCEAL7Q9BRU2 100 aa11.28□□□□□ -0.6
TRIM28-213ENST00000598355 TRGV1A0A0A0MS02 117 aa11.27□□□□□ -0.61
TRIM28-213ENST00000598355 PEX7O00628 323 aa11.27□□□□□ -0.61
TRIM28-213ENST00000598355 PFDN1O60925 122 aa11.27□□□□□ -0.61
TRIM28-213ENST00000598355 ZNF80P51504 273 aaPredicted RBP11.27□□□□□ -0.61
TRIM28-213ENST00000598355 UBE2G2P60604 165 aa11.27□□□□□ -0.61
TRIM28-213ENST00000598355 FAM159AQ6UWV7 190 aa11.27□□□□□ -0.61
TRIM28-213ENST00000598355 HIST1H2BAQ96A08 127 aa11.27□□□□□ -0.61
TRIM28-213ENST00000598355 MDFICQ9P1T7 246 aa11.27□□□□□ -0.61
TRIM28-213ENST00000598355 TMEM183BQ1AE95 376 aa11.26□□□□□ -0.61
TRIM28-213ENST00000598355 COX8CQ7Z4L0 72 aa11.26□□□□□ -0.61
TRIM28-213ENST00000598355 Q86TA4 180 aa11.26□□□□□ -0.61
TRIM28-213ENST00000598355 TMEM183AQ8IXX5 376 aa11.26□□□□□ -0.61
TRIM28-213ENST00000598355 FAM213BQ8TBF2 198 aa11.26□□□□□ -0.61
TRIM28-213ENST00000598355 SPXQ9BT56 116 aa11.26□□□□□ -0.61
TRIM28-213ENST00000598355 C11orf21Q9P2W6 132 aa11.26□□□□□ -0.61
TRIM28-213ENST00000598355 EPPK1P58107 5090 aaKnown RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 171 ms