RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 TMPRSS5Q9H3S3 457 aa9.82□□□□□ -0.84
UPF1-205ENST00000598209 hCG_2014768A0A024R1R8 64 aa9.81□□□□□ -0.84
UPF1-205ENST00000598209 TRAV8-1A0A0A6YYK1 113 aa9.81□□□□□ -0.84
UPF1-205ENST00000598209 MAP1LC3B2A6NCE7 125 aa9.81□□□□□ -0.84
UPF1-205ENST00000598209 CBY3A6NI87 242 aa9.81□□□□□ -0.84
UPF1-205ENST00000598209 GGTLC3B5MD39 225 aa9.81□□□□□ -0.84
UPF1-205ENST00000598209 RGS13O14921 159 aa9.81□□□□□ -0.84
UPF1-205ENST00000598209 TCRAP04437 139 aa9.81□□□□□ -0.84
UPF1-205ENST00000598209 SEC11BP0C7V7 166 aa9.81□□□□□ -0.84
UPF1-205ENST00000598209 ZNF680Q8NEM1 530 aa9.81□□□□□ -0.84
UPF1-205ENST00000598209 NDUFAF3Q9BU61 184 aa9.81□□□□□ -0.84
UPF1-205ENST00000598209 MAP1LC3BQ9GZQ8 125 aa9.81□□□□□ -0.84
UPF1-205ENST00000598209 IGHV1OR15-1A0A075B7D0 117 aa9.8□□□□□ -0.84
UPF1-205ENST00000598209 SERTM2A0A1B0GWG4 89 aa9.8□□□□□ -0.84
UPF1-205ENST00000598209 A0A1W2PRE2 83 aa9.8□□□□□ -0.84
UPF1-205ENST00000598209 FHITP49789 147 aa9.8□□□□□ -0.84
UPF1-205ENST00000598209 UBE2G2P60604 165 aa9.8□□□□□ -0.84
UPF1-205ENST00000598209 EIF5AP63241 154 aaKnown RBP9.8□□□□□ -0.84
UPF1-205ENST00000598209 ANXA2RQ3ZCQ2 193 aa9.8□□□□□ -0.84
UPF1-205ENST00000598209 UMAD1C9J7I0 102 aa9.79□□□□□ -0.84
UPF1-205ENST00000598209 K7EQM0 130 aa9.79□□□□□ -0.84
UPF1-205ENST00000598209 TPT1P13693 172 aaKnown RBP9.79□□□□□ -0.84
UPF1-205ENST00000598209 LGALSLQ3ZCW2 172 aaPredicted RBP9.79□□□□□ -0.84
UPF1-205ENST00000598209 Q6AWC8 147 aa9.79□□□□□ -0.84
UPF1-205ENST00000598209 LINC00612Q8N6U2 182 aa9.79□□□□□ -0.84
UPF1-205ENST00000598209 C11orf72Q8NBR9 251 aa9.79□□□□□ -0.84
UPF1-205ENST00000598209 TVP23CQ96ET8 276 aa9.79□□□□□ -0.84
UPF1-205ENST00000598209 FAM210BQ96KR6 192 aa9.79□□□□□ -0.84
UPF1-205ENST00000598209 SGK494Q96LW2 274 aa9.79□□□□□ -0.84
UPF1-205ENST00000598209 GSN-AS1Q9NRJ2 163 aa9.79□□□□□ -0.84
UPF1-205ENST00000598209 TP53TG3Q9ULZ0 132 aa9.79□□□□□ -0.84
UPF1-205ENST00000598209 EPDR1Q9UM22 224 aa9.79□□□□□ -0.84
UPF1-205ENST00000598209 FAM74A7A6NL05 159 aa9.78□□□□□ -0.84
UPF1-205ENST00000598209 F6UZH7 168 aa9.78□□□□□ -0.84
UPF1-205ENST00000598209 C1QBP02746 253 aa9.78□□□□□ -0.84
UPF1-205ENST00000598209 ATP5G1P05496 136 aa9.78□□□□□ -0.84
UPF1-205ENST00000598209 ATP5G3P48201 142 aa9.78□□□□□ -0.84
UPF1-205ENST00000598209 DAZ2Q13117 558 aaKnown RBP9.78□□□□□ -0.84
UPF1-205ENST00000598209 MUC21Q5SSG8 566 aa9.78□□□□□ -0.84
UPF1-205ENST00000598209 AKAP14Q86UN6 197 aa9.78□□□□□ -0.84
UPF1-205ENST00000598209 CYB561D1Q8N8Q1 229 aa9.78□□□□□ -0.84
UPF1-205ENST00000598209 STOML3Q8TAV4 291 aa9.78□□□□□ -0.84
UPF1-205ENST00000598209 FAM213BQ8TBF2 198 aa9.78□□□□□ -0.84
UPF1-205ENST00000598209 ATG101Q9BSB4 218 aa9.78□□□□□ -0.84
UPF1-205ENST00000598209 NDFIP1Q9BT67 221 aa9.78□□□□□ -0.84
UPF1-205ENST00000598209 TREM1Q9NP99 234 aa9.78□□□□□ -0.84
UPF1-205ENST00000598209 GAGE12BA1L429 117 aa9.77□□□□□ -0.85
UPF1-205ENST00000598209 F5H768 121 aa9.77□□□□□ -0.85
UPF1-205ENST00000598209 GAGE7O76087 117 aa9.77□□□□□ -0.85
UPF1-205ENST00000598209 IFNA7P01567 189 aa9.77□□□□□ -0.85
UPF1-205ENST00000598209 GAGE12FP0CL80 117 aa9.77□□□□□ -0.85
UPF1-205ENST00000598209 GAGE12GP0CL81 117 aa9.77□□□□□ -0.85
UPF1-205ENST00000598209 GAGE12IP0CL82 117 aa9.77□□□□□ -0.85
UPF1-205ENST00000598209 TCL1AP56279 114 aa9.77□□□□□ -0.85
UPF1-205ENST00000598209 FLI1Q01543 452 aaPredicted RBP9.77□□□□□ -0.85
UPF1-205ENST00000598209 IBA57Q5T440 356 aaKnown RBP9.77□□□□□ -0.85
UPF1-205ENST00000598209 TMEM88Q6PEY1 159 aa9.77□□□□□ -0.85
UPF1-205ENST00000598209 Q6ZTI0 123 aa9.77□□□□□ -0.85
UPF1-205ENST00000598209 NKX6-2Q9C056 277 aaPredicted RBP9.77□□□□□ -0.85
UPF1-205ENST00000598209 PSG8Q9UQ74 426 aa9.77□□□□□ -0.85
UPF1-205ENST00000598209 KLF12Q9Y4X4 402 aa9.77□□□□□ -0.85
UPF1-205ENST00000598209 IGLV2-11P01706 119 aa9.76□□□□□ -0.85
UPF1-205ENST00000598209 FAM159AQ6UWV7 190 aa9.76□□□□□ -0.85
UPF1-205ENST00000598209 DPPA3Q6W0C5 159 aa9.76□□□□□ -0.85
UPF1-205ENST00000598209 PRNTQ86SH4 94 aa9.76□□□□□ -0.85
UPF1-205ENST00000598209 TMEM75Q8N9X5 138 aa9.76□□□□□ -0.85
UPF1-205ENST00000598209 SFT2D1Q8WV19 159 aa9.76□□□□□ -0.85
UPF1-205ENST00000598209 MBD3L1Q8WWY6 194 aa9.76□□□□□ -0.85
UPF1-205ENST00000598209 NAGKQ9UJ70 344 aa9.76□□□□□ -0.85
UPF1-205ENST00000598209 TRGV1A0A0A0MS02 117 aa9.75□□□□□ -0.85
UPF1-205ENST00000598209 TRAV21A0A0B4J279 112 aa9.75□□□□□ -0.85
UPF1-205ENST00000598209 FBLL1A6NHQ2 334 aaKnown RBP9.75□□□□□ -0.85
UPF1-205ENST00000598209 PEX7O00628 323 aa9.75□□□□□ -0.85
UPF1-205ENST00000598209 ZNF415Q09FC8 603 aa9.75□□□□□ -0.85
UPF1-205ENST00000598209 C8orf49Q96NF6 230 aa9.75□□□□□ -0.85
UPF1-205ENST00000598209 TRAV34A0A0B4J273 112 aa9.74□□□□□ -0.85
UPF1-205ENST00000598209 A0A1B0GV50 99 aa9.74□□□□□ -0.85
UPF1-205ENST00000598209 SPINK4O60575 86 aa9.74□□□□□ -0.85
UPF1-205ENST00000598209 P0DMU3 169 aa9.74□□□□□ -0.85
UPF1-205ENST00000598209 FAM231AP0DMU4 169 aa9.74□□□□□ -0.85
UPF1-205ENST00000598209 FAM231CP0DMU5 169 aa9.74□□□□□ -0.85
UPF1-205ENST00000598209 TMEM183BQ1AE95 376 aa9.74□□□□□ -0.85
UPF1-205ENST00000598209 TMEM183AQ8IXX5 376 aa9.74□□□□□ -0.85
UPF1-205ENST00000598209 C15orf53Q8NAA6 179 aa9.74□□□□□ -0.85
UPF1-205ENST00000598209 HIST1H2BAQ96A08 127 aa9.74□□□□□ -0.85
UPF1-205ENST00000598209 LINC00479Q96M42 142 aa9.74□□□□□ -0.85
UPF1-205ENST00000598209 VPS13DQ5THJ4 4388 aa9.74□□□□□ -0.85
UPF1-205ENST00000598209 MUC4Q99102 2169 aa9.74□□□□□ -0.85
UPF1-205ENST00000598209 KMT2AQ03164 3969 aa9.73□□□□□ -0.85
UPF1-205ENST00000598209 TRGV11A0A075B6L2 103 aa9.73□□□□□ -0.85
UPF1-205ENST00000598209 TRGV2A0A075B6R0 118 aa9.73□□□□□ -0.85
UPF1-205ENST00000598209 H2AFB1P0C5Y9 115 aa9.73□□□□□ -0.85
UPF1-205ENST00000598209 PPT1P50897 306 aa9.73□□□□□ -0.85
UPF1-205ENST00000598209 ZNF80P51504 273 aaPredicted RBP9.73□□□□□ -0.85
UPF1-205ENST00000598209 TDRG1Q3Y452 100 aa9.73□□□□□ -0.85
UPF1-205ENST00000598209 SMUG1Q53HV7 270 aa9.73□□□□□ -0.85
UPF1-205ENST00000598209 SAPCD1Q5SSQ6 148 aa9.73□□□□□ -0.85
UPF1-205ENST00000598209 CST9LP1Q5W188 147 aa9.73□□□□□ -0.85
UPF1-205ENST00000598209 EIF5AL1Q6IS14 154 aaKnown RBP9.73□□□□□ -0.85
UPF1-205ENST00000598209 MRPL16Q9NX20 251 aaKnown RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms