RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 MED14OSP0DP75 135 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 ADCYAP1P18509 176 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 ZNF138P52744 262 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 ZNF674Q2M3X9 581 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 SOHLH1Q5JUK2 328 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 PRNTQ86SH4 94 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 GTSCR1Q86UQ5 136 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 OR4B1Q8NGF8 309 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 Q8TAT8 98 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 LINC00476Q8WZB0 136 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 FMC1Q96HJ9 113 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 MLST8Q9BVC4 326 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 PGPEP1LA6NFU8 196 aa6.91□□□□□ -1.3
TRIM28-208ENST00000597172 FBLL1A6NHQ2 334 aaKnown RBP6.91□□□□□ -1.3
TRIM28-208ENST00000597172 ZNF727A8MUV8 499 aa6.91□□□□□ -1.3
TRIM28-208ENST00000597172 LY6G6CO95867 125 aa6.91□□□□□ -1.3
TRIM28-208ENST00000597172 UBE2G1P62253 170 aa6.91□□□□□ -1.3
TRIM28-208ENST00000597172 KIR3DS1Q14943 382 aa6.91□□□□□ -1.3
TRIM28-208ENST00000597172 C10orf91Q5T1B1 145 aa6.91□□□□□ -1.3
TRIM28-208ENST00000597172 TMEM78Q5T7P6 136 aa6.91□□□□□ -1.3
TRIM28-208ENST00000597172 Q86TA4 180 aa6.91□□□□□ -1.3
TRIM28-208ENST00000597172 TRPT1Q86TN4 253 aaKnown RBP6.91□□□□□ -1.3
TRIM28-208ENST00000597172 BAGE2Q86Y30 109 aa6.91□□□□□ -1.3
TRIM28-208ENST00000597172 OCC1Q8TAD7 63 aa6.91□□□□□ -1.3
TRIM28-208ENST00000597172 C8orf49Q96NF6 230 aa6.91□□□□□ -1.3
TRIM28-208ENST00000597172 CLUHP3Q96NS8 147 aa6.91□□□□□ -1.3
TRIM28-208ENST00000597172 SMIM7Q9BQ49 75 aa6.91□□□□□ -1.3
TRIM28-208ENST00000597172 C9JCJ5 164 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 GIG44P09565 113 aaPredicted RBP6.9□□□□□ -1.3
TRIM28-208ENST00000597172 GNG4P50150 75 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 CRIP1P50238 77 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 TMEM241Q24JQ0 296 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 FAM74A3Q4VXF1 159 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 CENPWQ5EE01 88 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 PRR9Q5T870 116 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 COX8CQ7Z4L0 72 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 STHQ8IWL8 128 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 TMEM183AQ8IXX5 376 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 ZFAND2AQ8N6M9 145 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 NHLRC2Q8NBF2 726 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 SEC11CQ9BY50 192 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 SDF2L1Q9HCN8 221 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 ZFP30Q9Y2G7 519 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 LENEPQ9Y5L5 61 aa6.9□□□□□ -1.3
TRIM28-208ENST00000597172 TRBV7-9A0A0J9YWB2 115 aa6.89□□□□□ -1.31
TRIM28-208ENST00000597172 F8W036 122 aa6.89□□□□□ -1.31
TRIM28-208ENST00000597172 K7EN84 100 aa6.89□□□□□ -1.31
TRIM28-208ENST00000597172 CRXO43186 299 aaPredicted RBP6.89□□□□□ -1.31
TRIM28-208ENST00000597172 CRISP2P16562 243 aa6.89□□□□□ -1.31
TRIM28-208ENST00000597172 RPL35AP18077 110 aaKnown RBP6.89□□□□□ -1.31
TRIM28-208ENST00000597172 ZNF80P51504 273 aaPredicted RBP6.89□□□□□ -1.31
TRIM28-208ENST00000597172 FXYD7P58549 80 aa6.89□□□□□ -1.31
TRIM28-208ENST00000597172 SAPCD1Q5SSQ6 148 aa6.89□□□□□ -1.31
TRIM28-208ENST00000597172 LINC00322Q6ZN03 302 aaPredicted RBP6.89□□□□□ -1.31
TRIM28-208ENST00000597172 Q6ZQT7 251 aa6.89□□□□□ -1.31
TRIM28-208ENST00000597172 ODF3Q96PU9 254 aa6.89□□□□□ -1.31
TRIM28-208ENST00000597172 SRD5A3Q9H8P0 318 aa6.89□□□□□ -1.31
TRIM28-208ENST00000597172 LY96Q9Y6Y9 160 aa6.89□□□□□ -1.31
TRIM28-208ENST00000597172 VPS13DQ5THJ4 4388 aa6.89□□□□□ -1.31
TRIM28-208ENST00000597172 AGRNO00468 2067 aa6.88□□□□□ -1.31
TRIM28-208ENST00000597172 KLLNB2CW77 178 aa6.88□□□□□ -1.31
TRIM28-208ENST00000597172 M0R2Z0 102 aa6.88□□□□□ -1.31
TRIM28-208ENST00000597172 IGHV4-30-4P0DP06 118 aa6.88□□□□□ -1.31
TRIM28-208ENST00000597172 RPL23P62829 140 aaKnown RBP6.88□□□□□ -1.31
TRIM28-208ENST00000597172 OR5I1Q13606 314 aa6.88□□□□□ -1.31
TRIM28-208ENST00000597172 SPINK13Q1W4C9 94 aa6.88□□□□□ -1.31
TRIM28-208ENST00000597172 LINC01551Q86U37 167 aa6.88□□□□□ -1.31
TRIM28-208ENST00000597172 IL17DQ8TAD2 202 aa6.88□□□□□ -1.31
TRIM28-208ENST00000597172 ZC2HC1AQ96GY0 325 aa6.88□□□□□ -1.31
TRIM28-208ENST00000597172 NAT8Q9UHE5 227 aa6.88□□□□□ -1.31
TRIM28-208ENST00000597172 CARHSP1Q9Y2V2 147 aaKnown RBP6.88□□□□□ -1.31
TRIM28-208ENST00000597172 TRAV12-2A0A075B6T6 113 aa6.87□□□□□ -1.31
TRIM28-208ENST00000597172 A8MZ25 164 aa6.87□□□□□ -1.31
TRIM28-208ENST00000597172 KRBOX1C9JBD0 128 aa6.87□□□□□ -1.31
TRIM28-208ENST00000597172 J3KRW8 73 aa6.87□□□□□ -1.31
TRIM28-208ENST00000597172 ZNF324O75467 553 aaPredicted RBP6.87□□□□□ -1.31
TRIM28-208ENST00000597172 GCGP01275 180 aa6.87□□□□□ -1.31
TRIM28-208ENST00000597172 GPX1P07203 203 aa6.87□□□□□ -1.31
TRIM28-208ENST00000597172 RNASE4P34096 147 aaKnown RBP6.87□□□□□ -1.31
TRIM28-208ENST00000597172 LEPP41159 167 aa6.87□□□□□ -1.31
TRIM28-208ENST00000597172 CDKN1BP46527 198 aa6.87□□□□□ -1.31
TRIM28-208ENST00000597172 SMUG1Q53HV7 270 aa6.87□□□□□ -1.31
TRIM28-208ENST00000597172 ZNF575Q86XF7 245 aa6.87□□□□□ -1.31
TRIM28-208ENST00000597172 SMIM12Q96EX1 92 aa6.87□□□□□ -1.31
TRIM28-208ENST00000597172 TM2D3Q9BRN9 247 aa6.87□□□□□ -1.31
TRIM28-208ENST00000597172 NIPSNAP3BQ9BS92 247 aa6.87□□□□□ -1.31
TRIM28-208ENST00000597172 TUBA4BQ9H853 241 aa6.87□□□□□ -1.31
TRIM28-208ENST00000597172 SRRM2Q9UQ35 2752 aaKnown RBP6.86□□□□□ -1.31
TRIM28-208ENST00000597172 HSPG2P98160 4391 aa6.86□□□□□ -1.31
TRIM28-208ENST00000597172 LOC102724200A0A096LPH7 203 aaPredicted RBP6.86□□□□□ -1.31
TRIM28-208ENST00000597172 C19orf71A6NCJ1 209 aa6.86□□□□□ -1.31
TRIM28-208ENST00000597172 FRMD6-AS1P0C7T7 363 aa6.86□□□□□ -1.31
TRIM28-208ENST00000597172 RBMY1A1P0DJD3 496 aaKnown RBP6.86□□□□□ -1.31
TRIM28-208ENST00000597172 RBMY1CP0DJD4 496 aa6.86□□□□□ -1.31
TRIM28-208ENST00000597172 MGST1P10620 155 aaKnown RBP6.86□□□□□ -1.31
TRIM28-208ENST00000597172 TSPOP30536 169 aa6.86□□□□□ -1.31
TRIM28-208ENST00000597172 BTN1A1Q13410 526 aa6.86□□□□□ -1.31
TRIM28-208ENST00000597172 RBMY1FQ15415 496 aaKnown RBP6.86□□□□□ -1.31
TRIM28-208ENST00000597172 GFI1BQ5VTD9 330 aa6.86□□□□□ -1.31
TRIM28-208ENST00000597172 MORN3Q6PF18 240 aaPredicted RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms