RNA–Protein interactions for RNA: ENST00000584908.5

ERBB2-222, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 1 (best)

Gene ERBB2, Length 1,316 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-222	ENST00000584908	DAZ2	Q13117	558 aa	Known RBP	11.5	□□□□□ -0.57
ERBB2-222	ENST00000584908	C11orf72	Q8NBR9	251 aa		11.5	□□□□□ -0.57
ERBB2-222	ENST00000584908	ZNF680	Q8NEM1	530 aa		11.5	□□□□□ -0.57
ERBB2-222	ENST00000584908	ZNF471	Q9BX82	626 aa	Predicted RBP	11.5	□□□□□ -0.57
ERBB2-222	ENST00000584908	NOP10	Q9NPE3	64 aa	Known RBP	11.5	□□□□□ -0.57
ERBB2-222	ENST00000584908	CBY3	A6NI87	242 aa		11.49	□□□□□ -0.57
ERBB2-222	ENST00000584908	C1QB	P02746	253 aa		11.49	□□□□□ -0.57
ERBB2-222	ENST00000584908	SUMO1	P63165	101 aa	Known RBP	11.49	□□□□□ -0.57
ERBB2-222	ENST00000584908		Q6ZQT7	251 aa		11.49	□□□□□ -0.57
ERBB2-222	ENST00000584908	STOML3	Q8TAV4	291 aa		11.49	□□□□□ -0.57
ERBB2-222	ENST00000584908	NDUFAF3	Q9BU61	184 aa		11.49	□□□□□ -0.57
ERBB2-222	ENST00000584908	NKX6-2	Q9C056	277 aa	Predicted RBP	11.49	□□□□□ -0.57
ERBB2-222	ENST00000584908	TMPRSS5	Q9H3S3	457 aa		11.49	□□□□□ -0.57
ERBB2-222	ENST00000584908	RPH3AL	Q9UNE2	315 aa		11.49	□□□□□ -0.57
ERBB2-222	ENST00000584908	IGHV1OR15-1	A0A075B7D0	117 aa		11.48	□□□□□ -0.57
ERBB2-222	ENST00000584908	TRAV8-1	A0A0A6YYK1	113 aa		11.48	□□□□□ -0.57
ERBB2-222	ENST00000584908	MAP1LC3B2	A6NCE7	125 aa		11.48	□□□□□ -0.57
ERBB2-222	ENST00000584908	SNURFL	B1AK76	121 aa		11.48	□□□□□ -0.57
ERBB2-222	ENST00000584908	DEFB130B	P0DP73	79 aa		11.48	□□□□□ -0.57
ERBB2-222	ENST00000584908	DEFB130A	P0DP74	79 aa		11.48	□□□□□ -0.57
ERBB2-222	ENST00000584908	LGALSL	Q3ZCW2	172 aa	Predicted RBP	11.48	□□□□□ -0.57
ERBB2-222	ENST00000584908	IBA57	Q5T440	356 aa	Known RBP	11.48	□□□□□ -0.57
ERBB2-222	ENST00000584908	TVP23C	Q96ET8	276 aa		11.48	□□□□□ -0.57
ERBB2-222	ENST00000584908	MAP1LC3B	Q9GZQ8	125 aa		11.48	□□□□□ -0.57
ERBB2-222	ENST00000584908	EPDR1	Q9UM22	224 aa		11.48	□□□□□ -0.57
ERBB2-222	ENST00000584908	FBLL1	A6NHQ2	334 aa	Known RBP	11.47	□□□□□ -0.57
ERBB2-222	ENST00000584908		K7EQM0	130 aa		11.47	□□□□□ -0.57
ERBB2-222	ENST00000584908	RGS13	O14921	159 aa		11.47	□□□□□ -0.57
ERBB2-222	ENST00000584908	PFDN1	O60925	122 aa		11.47	□□□□□ -0.57
ERBB2-222	ENST00000584908	IGLV2-11	P01706	119 aa		11.47	□□□□□ -0.57
ERBB2-222	ENST00000584908	TPT1	P13693	172 aa	Known RBP	11.47	□□□□□ -0.57
ERBB2-222	ENST00000584908	FHIT	P49789	147 aa		11.47	□□□□□ -0.57
ERBB2-222	ENST00000584908	FGF8	P55075	233 aa	Predicted RBP	11.47	□□□□□ -0.57
ERBB2-222	ENST00000584908	DPPA3	Q6W0C5	159 aa		11.47	□□□□□ -0.57
ERBB2-222	ENST00000584908	CYB561D1	Q8N8Q1	229 aa		11.47	□□□□□ -0.57
ERBB2-222	ENST00000584908	MBD3L1	Q8WWY6	194 aa		11.47	□□□□□ -0.57
ERBB2-222	ENST00000584908	ATG101	Q9BSB4	218 aa		11.47	□□□□□ -0.57
ERBB2-222	ENST00000584908	FAM74A7	A6NL05	159 aa		11.46	□□□□□ -0.57
ERBB2-222	ENST00000584908	ATP5G1	P05496	136 aa		11.46	□□□□□ -0.57
ERBB2-222	ENST00000584908	ATP5G3	P48201	142 aa		11.46	□□□□□ -0.57
ERBB2-222	ENST00000584908	TCL1A	P56279	114 aa		11.46	□□□□□ -0.57
ERBB2-222	ENST00000584908	TDRG1	Q3Y452	100 aa		11.46	□□□□□ -0.57
ERBB2-222	ENST00000584908	IQCF2	Q8IXL9	164 aa		11.46	□□□□□ -0.57
ERBB2-222	ENST00000584908	TMEM75	Q8N9X5	138 aa		11.46	□□□□□ -0.57
ERBB2-222	ENST00000584908	C18orf15	Q96N68	181 aa		11.46	□□□□□ -0.57
ERBB2-222	ENST00000584908	ARL2-SNX15	V9GYD0	113 aa		11.46	□□□□□ -0.57
ERBB2-222	ENST00000584908	KMT2A	Q03164	3969 aa		11.46	□□□□□ -0.57
ERBB2-222	ENST00000584908	HTN3	P15516	51 aa		11.45	□□□□□ -0.58
ERBB2-222	ENST00000584908	AKAP14	Q86UN6	197 aa		11.45	□□□□□ -0.58
ERBB2-222	ENST00000584908	TREM1	Q9NP99	234 aa		11.45	□□□□□ -0.58
ERBB2-222	ENST00000584908	GSN-AS1	Q9NRJ2	163 aa		11.45	□□□□□ -0.58
ERBB2-222	ENST00000584908	TP53TG3	Q9ULZ0	132 aa		11.45	□□□□□ -0.58
ERBB2-222	ENST00000584908	FLI1	Q01543	452 aa	Predicted RBP	11.44	□□□□□ -0.58
ERBB2-222	ENST00000584908	PSG8	Q9UQ74	426 aa		11.44	□□□□□ -0.58
ERBB2-222	ENST00000584908	KLF12	Q9Y4X4	402 aa		11.44	□□□□□ -0.58
ERBB2-222	ENST00000584908	MUC4	Q99102	2169 aa		11.43	□□□□□ -0.58
ERBB2-222	ENST00000584908	TRAV21	A0A0B4J279	112 aa		11.43	□□□□□ -0.58
ERBB2-222	ENST00000584908	SPINK4	O60575	86 aa		11.43	□□□□□ -0.58
ERBB2-222	ENST00000584908	UBE2G2	P60604	165 aa		11.43	□□□□□ -0.58
ERBB2-222	ENST00000584908	TMEM88	Q6PEY1	159 aa		11.43	□□□□□ -0.58
ERBB2-222	ENST00000584908		Q6ZTI0	123 aa		11.43	□□□□□ -0.58
ERBB2-222	ENST00000584908	FAM213B	Q8TBF2	198 aa		11.43	□□□□□ -0.58
ERBB2-222	ENST00000584908	HIST1H2BA	Q96A08	127 aa		11.43	□□□□□ -0.58
ERBB2-222	ENST00000584908	SGK494	Q96LW2	274 aa		11.43	□□□□□ -0.58
ERBB2-222	ENST00000584908	TCEAL7	Q9BRU2	100 aa		11.43	□□□□□ -0.58
ERBB2-222	ENST00000584908	NDFIP1	Q9BT67	221 aa		11.43	□□□□□ -0.58
ERBB2-222	ENST00000584908	hCG_2014768	A0A024R1R8	64 aa		11.42	□□□□□ -0.58
ERBB2-222	ENST00000584908	GAGE12B	A1L429	117 aa		11.42	□□□□□ -0.58
ERBB2-222	ENST00000584908	GAGE7	O76087	117 aa		11.42	□□□□□ -0.58
ERBB2-222	ENST00000584908	GAGE12F	P0CL80	117 aa		11.42	□□□□□ -0.58
ERBB2-222	ENST00000584908	GAGE12G	P0CL81	117 aa		11.42	□□□□□ -0.58
ERBB2-222	ENST00000584908	GAGE12I	P0CL82	117 aa		11.42	□□□□□ -0.58
ERBB2-222	ENST00000584908	LGALS9B	Q3B8N2	356 aa		11.42	□□□□□ -0.58
ERBB2-222	ENST00000584908	FAM159A	Q6UWV7	190 aa		11.42	□□□□□ -0.58
ERBB2-222	ENST00000584908	C15orf53	Q8NAA6	179 aa		11.42	□□□□□ -0.58
ERBB2-222	ENST00000584908	SFT2D1	Q8WV19	159 aa		11.42	□□□□□ -0.58
ERBB2-222	ENST00000584908	DNAH6	Q9C0G6	4158 aa		11.42	□□□□□ -0.58
ERBB2-222	ENST00000584908		F5H768	121 aa		11.41	□□□□□ -0.58
ERBB2-222	ENST00000584908		F6UZH7	168 aa		11.41	□□□□□ -0.58
ERBB2-222	ENST00000584908	PEX7	O00628	323 aa		11.41	□□□□□ -0.58
ERBB2-222	ENST00000584908	IFNA7	P01567	189 aa		11.41	□□□□□ -0.58
ERBB2-222	ENST00000584908		P0DMU3	169 aa		11.41	□□□□□ -0.58
ERBB2-222	ENST00000584908	FAM231A	P0DMU4	169 aa		11.41	□□□□□ -0.58
ERBB2-222	ENST00000584908	FAM231C	P0DMU5	169 aa		11.41	□□□□□ -0.58
ERBB2-222	ENST00000584908	RAB5C	P51148	216 aa		11.41	□□□□□ -0.58
ERBB2-222	ENST00000584908	ZNF415	Q09FC8	603 aa		11.41	□□□□□ -0.58
ERBB2-222	ENST00000584908	MUC21	Q5SSG8	566 aa		11.41	□□□□□ -0.58
ERBB2-222	ENST00000584908	SAPCD1	Q5SSQ6	148 aa		11.41	□□□□□ -0.58
ERBB2-222	ENST00000584908	EIF5AL1	Q6IS14	154 aa	Known RBP	11.41	□□□□□ -0.58
ERBB2-222	ENST00000584908	TRGV11	A0A075B6L2	103 aa		11.4	□□□□□ -0.58
ERBB2-222	ENST00000584908	H2AFB1	P0C5Y9	115 aa		11.4	□□□□□ -0.58
ERBB2-222	ENST00000584908	SLC51B	Q86UW2	128 aa		11.4	□□□□□ -0.58
ERBB2-222	ENST00000584908	LINC00479	Q96M42	142 aa		11.4	□□□□□ -0.58
ERBB2-222	ENST00000584908	C8orf49	Q96NF6	230 aa		11.4	□□□□□ -0.58
ERBB2-222	ENST00000584908	TRAV1-1	A0A0B4J248	108 aa		11.39	□□□□□ -0.59
ERBB2-222	ENST00000584908	PFN1	P07737	140 aa	Known RBP	11.39	□□□□□ -0.59
ERBB2-222	ENST00000584908	PPT1	P50897	306 aa		11.39	□□□□□ -0.59
ERBB2-222	ENST00000584908	ZNF80	P51504	273 aa	Predicted RBP	11.39	□□□□□ -0.59
ERBB2-222	ENST00000584908	TMEM183B	Q1AE95	376 aa		11.39	□□□□□ -0.59
ERBB2-222	ENST00000584908	SMUG1	Q53HV7	270 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 194 ms