RNA–Protein interactions for RNA: ENST00000572787.1

TOPBP1-210, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 4

Gene TOPBP1, Length 402 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-210ENST00000572787 TRAV2A0A0B4J234 112 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 TRAV1-1A0A0B4J248 108 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 LOC107984156A0A0G2JMH3 177 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 C11orf86A6NJI1 115 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 IGKCP01834 107 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 CRPP02741 224 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 IL4P05112 153 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 CBLN1P23435 193 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 HCFC1P51610 2035 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 KRTDAPP60985 99 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 ZNF816Q0VGE8 651 aaPredicted RBP3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 NNATQ16517 81 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 SPANXN5Q5MJ07 72 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 COMMD6Q7Z4G1 85 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 ARL17AQ8IVW1 177 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 UBALD1Q8TB05 177 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 DYNLRB2Q8TF09 96 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 MUCL1Q96DR8 90 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 NOTCH4Q99466 2003 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 MGST2Q99735 147 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 ZC3H13Q5T200 1668 aaKnown RBP3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 ROBO1Q9Y6N7 1651 aa3.23□□□□□ -1.89
TOPBP1-210ENST00000572787 DAPK1P53355 1430 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 SBF2Q86WG5 1849 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 TRAV3A0A0B4J244 114 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 IGHV1-18A0A0C4DH31 117 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 IBA57-AS1B1ANH7 110 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 SLPIP03973 132 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 CISD3P0C7P0 127 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 DEFA4P12838 97 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 SEC11AP67812 179 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 C1orf134Q5TEV5 83 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 Q6ZR54 194 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 TMEM136Q6ZRR5 245 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 ST20-AS1Q8NBB2 130 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 MYOZ3Q8TDC0 251 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 CXCL16Q9H2A7 254 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 ST20Q9HBF5 79 aa3.22□□□□□ -1.89
TOPBP1-210ENST00000572787 PRDM15P57071 1507 aaPredicted RBP3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 IGKV2D-30A0A075B6S6 120 aa3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 A0A1B0GU33 70 aa3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 B4DSR2 109 aa3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 BAALC-AS2P0C853 105 aa3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 MGST1P10620 155 aaKnown RBP3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 CCL8P80075 99 aa3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 ARPINQ7Z6K5 226 aa3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 HMGN2P46Q86SG4 172 aa3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 LINC00269Q8N2A0 174 aa3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 FAM19A2Q8N3H0 131 aa3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 Q8NAQ8 132 aa3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 KLF14Q8TD94 323 aaPredicted RBP3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 TMEM141Q96I45 108 aa3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 C20orf78Q9BR46 151 aa3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 MYO5AQ9Y4I1 1855 aaKnown RBP3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 PARP14Q460N5 1801 aa3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 LAMC3Q9Y6N6 1575 aa3.21□□□□□ -1.9
TOPBP1-210ENST00000572787 USP54Q70EL1 1684 aa3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 TOPAZ1Q8N9V7 1692 aa3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 PPLO60437 1756 aa3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 CCDC180Q9P1Z9 1646 aa3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 hADV29S1A0JD25 119 aa3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 H3BRM9 83 aa3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 CCKP06307 115 aa3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 ADCYAP1P18509 176 aa3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 FAUP35544 74 aaKnown RBP3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 DSCR4P56555 118 aaPredicted RBP3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 Q1T7F1 81 aa3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 CASC2Q6XLA1 102 aa3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 ZNF826PQ6ZT77 177 aa3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 PPDPFLQ8WWR9 84 aa3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 MRPL35Q9NZE8 188 aaKnown RBP3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 SPCS1Q9Y6A9 102 aa3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 HELZP42694 1942 aaKnown RBP3.2□□□□□ -1.9
TOPBP1-210ENST00000572787 TRPM3Q9HCF6 1732 aaPredicted RBP3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 IGLV10-54A0A075B6I4 117 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 IGHV3-64A0A075B6Q5 118 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 A0A087WSZ3 146 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 NAP1L6A6NFF2 107 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 C16orf90A8MZG2 172 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 RBM3P98179 157 aaKnown RBP3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 RHOHQ15669 191 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 ZNF431Q8TF32 576 aaPredicted RBP3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 NDUFA12Q9UI09 145 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 NLRP1Q9C000 1473 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 SCN8AQ9UQD0 1980 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 ARID1AO14497 2285 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 MYH1P12882 1939 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 SLIT3O75094 1523 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 MAGI3Q5TCQ9 1506 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 ABCA10Q8WWZ4 1543 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 ANKARQ7Z5J8 1434 aa3.19□□□□□ -1.9
TOPBP1-210ENST00000572787 MCM3APO60318 1980 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 KIDINS220Q9ULH0 1771 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 DIP2BQ9P265 1576 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 INO80Q9ULG1 1556 aaPredicted RBP3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 NCOA2Q15596 1464 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 IGKV1D-42A0A075B6H8 117 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 IGLV4-69A0A075B6H9 119 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 E7EUB6 86 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 C5orf67F2Z3F1 127 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms