RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 LEPP41159 167 aa6.18□□□□□ -1.42
SF3B3-212ENST00000568539 RPL35P42766 123 aaKnown RBP6.18□□□□□ -1.42
SF3B3-212ENST00000568539 CDKN1BP46527 198 aa6.18□□□□□ -1.42
SF3B3-212ENST00000568539 APOC4P55056 127 aa6.18□□□□□ -1.42
SF3B3-212ENST00000568539 FXYD7P58549 80 aa6.18□□□□□ -1.42
SF3B3-212ENST00000568539 TAS2R60P59551 318 aa6.18□□□□□ -1.42
SF3B3-212ENST00000568539 KIR3DS1Q14943 382 aa6.18□□□□□ -1.42
SF3B3-212ENST00000568539 DEFB121Q5J5C9 76 aa6.18□□□□□ -1.42
SF3B3-212ENST00000568539 SAPCD1Q5SSQ6 148 aa6.18□□□□□ -1.42
SF3B3-212ENST00000568539 PRNTQ86SH4 94 aa6.18□□□□□ -1.42
SF3B3-212ENST00000568539 ZFAND2AQ8N6M9 145 aa6.18□□□□□ -1.42
SF3B3-212ENST00000568539 MRAPQ8TCY5 172 aa6.18□□□□□ -1.42
SF3B3-212ENST00000568539 IGF2BP2-AS1Q96M15 143 aa6.18□□□□□ -1.42
SF3B3-212ENST00000568539 TRBV20OR9-2A0A075B6H5 130 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 TRAV12-2A0A075B6T6 113 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 UBE2CO00762 179 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 CA1P00915 261 aaPredicted RBP6.17□□□□□ -1.42
SF3B3-212ENST00000568539 TSPOP30536 169 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 PRR9Q5T870 116 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 UQCC3Q6UW78 93 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 COX8CQ7Z4L0 72 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 COMMD7Q86VX2 200 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 EIF4E3Q8N5X7 224 aaKnown RBP6.17□□□□□ -1.42
SF3B3-212ENST00000568539 CSNK1G2-AS1Q8NCQ2 148 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 C8orf49Q96NF6 230 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 NDFIP1Q9BT67 221 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 C1QTNF4Q9BXJ3 329 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 PARLQ9H300 379 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 TREM1Q9NP99 234 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 XCL2Q9UBD3 114 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 ZFP30Q9Y2G7 519 aa6.17□□□□□ -1.42
SF3B3-212ENST00000568539 RYR2Q92736 4967 aa6.16□□□□□ -1.42
SF3B3-212ENST00000568539 C9JCJ5 164 aa6.16□□□□□ -1.42
SF3B3-212ENST00000568539 J3KRW8 73 aa6.16□□□□□ -1.42
SF3B3-212ENST00000568539 GPX1P07203 203 aa6.16□□□□□ -1.42
SF3B3-212ENST00000568539 RBMY1A1P0DJD3 496 aaKnown RBP6.16□□□□□ -1.42
SF3B3-212ENST00000568539 RBMY1CP0DJD4 496 aa6.16□□□□□ -1.42
SF3B3-212ENST00000568539 CEBPGP53567 150 aa6.16□□□□□ -1.42
SF3B3-212ENST00000568539 BTN1A1Q13410 526 aa6.16□□□□□ -1.42
SF3B3-212ENST00000568539 RBMY1FQ15415 496 aaKnown RBP6.16□□□□□ -1.42
SF3B3-212ENST00000568539 ZNF674Q2M3X9 581 aa6.16□□□□□ -1.42
SF3B3-212ENST00000568539 CENPWQ5EE01 88 aa6.16□□□□□ -1.42
SF3B3-212ENST00000568539 GFI1BQ5VTD9 330 aa6.16□□□□□ -1.42
SF3B3-212ENST00000568539 BAGE2Q86Y30 109 aa6.16□□□□□ -1.42
SF3B3-212ENST00000568539 TMEM183AQ8IXX5 376 aa6.16□□□□□ -1.42
SF3B3-212ENST00000568539 MLST8Q9BVC4 326 aa6.16□□□□□ -1.42
SF3B3-212ENST00000568539 C7orf71A4D174 169 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 ZNF324O75467 553 aaPredicted RBP6.15□□□□□ -1.42
SF3B3-212ENST00000568539 INSP01308 110 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 IGLV2-8P01709 118 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 SFTA3P0C7M3 94 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 RNASE4P34096 147 aaKnown RBP6.15□□□□□ -1.42
SF3B3-212ENST00000568539 GNG4P50150 75 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 ZNF80P51504 273 aaPredicted RBP6.15□□□□□ -1.42
SF3B3-212ENST00000568539 SMUG1Q53HV7 270 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 Q6AWC8 147 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 Q6ZWC4 215 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 SBSPONQ8IVN8 264 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 C1orf158Q8N1D5 194 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 NHLRC2Q8NBF2 726 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 SMIM12Q96EX1 92 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 ZC2HC1AQ96GY0 325 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 SMIM7Q9BQ49 75 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 C20orf144Q9BQM9 153 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 KRTAP17-1Q9BYP8 105 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 X6R8D5 127 aa6.15□□□□□ -1.42
SF3B3-212ENST00000568539 TRAV12-3A0A0B4J271 114 aa6.14□□□□□ -1.43
SF3B3-212ENST00000568539 PGPEP1LA6NFU8 196 aa6.14□□□□□ -1.43
SF3B3-212ENST00000568539 ZNF727A8MUV8 499 aa6.14□□□□□ -1.43
SF3B3-212ENST00000568539 GCGP01275 180 aa6.14□□□□□ -1.43
SF3B3-212ENST00000568539 CRIP1P50238 77 aa6.14□□□□□ -1.43
SF3B3-212ENST00000568539 DEFB135Q30KP9 77 aa6.14□□□□□ -1.43
SF3B3-212ENST00000568539 FAM74A3Q4VXF1 159 aa6.14□□□□□ -1.43
SF3B3-212ENST00000568539 SOHLH1Q5JUK2 328 aa6.14□□□□□ -1.43
SF3B3-212ENST00000568539 ZNF705AQ6ZN79 300 aaPredicted RBP6.14□□□□□ -1.43
SF3B3-212ENST00000568539 Q6ZQT7 251 aa6.14□□□□□ -1.43
SF3B3-212ENST00000568539 RNF183Q96D59 192 aa6.14□□□□□ -1.43
SF3B3-212ENST00000568539 B9D2Q9BPU9 175 aa6.14□□□□□ -1.43
SF3B3-212ENST00000568539 DNAH3Q8TD57 4116 aa6.14□□□□□ -1.43
SF3B3-212ENST00000568539 DYNC2H1Q8NCM8 4307 aaKnown RBP6.13□□□□□ -1.43
SF3B3-212ENST00000568539 TRAV21A0A0B4J279 112 aa6.13□□□□□ -1.43
SF3B3-212ENST00000568539 TMEM218A2RU14 115 aa6.13□□□□□ -1.43
SF3B3-212ENST00000568539 ZNF561-AS1K7EIQ3 104 aa6.13□□□□□ -1.43
SF3B3-212ENST00000568539 PFN1P07737 140 aaKnown RBP6.13□□□□□ -1.43
SF3B3-212ENST00000568539 TMEM256Q8N2U0 113 aa6.13□□□□□ -1.43
SF3B3-212ENST00000568539 OCC1Q8TAD7 63 aa6.13□□□□□ -1.43
SF3B3-212ENST00000568539 RCHY1Q96PM5 261 aa6.13□□□□□ -1.43
SF3B3-212ENST00000568539 TM2D3Q9BRN9 247 aa6.13□□□□□ -1.43
SF3B3-212ENST00000568539 OVOL2Q9BRP0 275 aa6.13□□□□□ -1.43
SF3B3-212ENST00000568539 NIPSNAP3BQ9BS92 247 aa6.13□□□□□ -1.43
SF3B3-212ENST00000568539 RETNQ9HD89 108 aa6.13□□□□□ -1.43
SF3B3-212ENST00000568539 TP53TG1Q9Y2A0 90 aa6.13□□□□□ -1.43
SF3B3-212ENST00000568539 GOLT1BQ9Y3E0 138 aa6.13□□□□□ -1.43
SF3B3-212ENST00000568539 LY96Q9Y6Y9 160 aa6.13□□□□□ -1.43
SF3B3-212ENST00000568539 IGHV3OR16-12A0A075B7B8 117 aa6.12□□□□□ -1.43
SF3B3-212ENST00000568539 FABP5P3A8MUU1 101 aa6.12□□□□□ -1.43
SF3B3-212ENST00000568539 H7BYZ3 331 aa6.12□□□□□ -1.43
SF3B3-212ENST00000568539 K7EN84 100 aa6.12□□□□□ -1.43
SF3B3-212ENST00000568539 SPRY2O43597 315 aa6.12□□□□□ -1.43
SF3B3-212ENST00000568539 SH2D1AO60880 128 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms