RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 ZNF138P52744 262 aa6.98□□□□□ -1.29
CLK3-220ENST00000567992 FGF8P55075 233 aaPredicted RBP6.98□□□□□ -1.29
CLK3-220ENST00000567992 AKR1C8PQ5T2L2 129 aa6.98□□□□□ -1.29
CLK3-220ENST00000567992 TMEM78Q5T7P6 136 aa6.98□□□□□ -1.29
CLK3-220ENST00000567992 Q6ZQT7 251 aa6.98□□□□□ -1.29
CLK3-220ENST00000567992 ARL6IP6Q8N6S5 226 aa6.98□□□□□ -1.29
CLK3-220ENST00000567992 RXFP4Q8TDU9 374 aa6.98□□□□□ -1.29
CLK3-220ENST00000567992 TMPRSS5Q9H3S3 457 aa6.98□□□□□ -1.29
CLK3-220ENST00000567992 TMEM167BQ9NRX6 74 aa6.98□□□□□ -1.29
CLK3-220ENST00000567992 TMA7Q9Y2S6 64 aaKnown RBP6.98□□□□□ -1.29
CLK3-220ENST00000567992 TRAV8-1A0A0A6YYK1 113 aa6.97□□□□□ -1.29
CLK3-220ENST00000567992 LOC105371267A0A1B0GV96 52 aa6.97□□□□□ -1.29
CLK3-220ENST00000567992 MAP1LC3B2A6NCE7 125 aa6.97□□□□□ -1.29
CLK3-220ENST00000567992 C11orf94C9JXX5 98 aa6.97□□□□□ -1.29
CLK3-220ENST00000567992 SPART-AS1P0CW21 52 aa6.97□□□□□ -1.29
CLK3-220ENST00000567992 GOLT1AQ6ZVE7 132 aa6.97□□□□□ -1.29
CLK3-220ENST00000567992 TMEM263Q8WUH6 116 aaKnown RBP6.97□□□□□ -1.29
CLK3-220ENST00000567992 TMED6Q8WW62 240 aa6.97□□□□□ -1.29
CLK3-220ENST00000567992 C16orf74Q96GX8 76 aa6.97□□□□□ -1.29
CLK3-220ENST00000567992 MAP1LC3BQ9GZQ8 125 aa6.97□□□□□ -1.29
CLK3-220ENST00000567992 RPH3ALQ9UNE2 315 aa6.97□□□□□ -1.29
CLK3-220ENST00000567992 TRAV10A0A0B4J240 114 aa6.96□□□□□ -1.3
CLK3-220ENST00000567992 A0A1W2PRE2 83 aa6.96□□□□□ -1.3
CLK3-220ENST00000567992 IGLV2-11P01706 119 aa6.96□□□□□ -1.3
CLK3-220ENST00000567992 TCRAP04437 139 aa6.96□□□□□ -1.3
CLK3-220ENST00000567992 RNASE4P34096 147 aaKnown RBP6.96□□□□□ -1.3
CLK3-220ENST00000567992 C10orf91Q5T1B1 145 aa6.96□□□□□ -1.3
CLK3-220ENST00000567992 C5orf17Q8NAS9 161 aa6.96□□□□□ -1.3
CLK3-220ENST00000567992 CMTM2Q8TAZ6 248 aa6.96□□□□□ -1.3
CLK3-220ENST00000567992 C2CD4CQ8TF44 421 aa6.96□□□□□ -1.3
CLK3-220ENST00000567992 TVP23CQ96ET8 276 aa6.96□□□□□ -1.3
CLK3-220ENST00000567992 PYGO2Q9BRQ0 406 aa6.96□□□□□ -1.3
CLK3-220ENST00000567992 LINC00467Q9BRT7 94 aa6.96□□□□□ -1.3
CLK3-220ENST00000567992 NIPSNAP3BQ9BS92 247 aa6.96□□□□□ -1.3
CLK3-220ENST00000567992 KLK5Q9Y337 293 aaPredicted RBP6.96□□□□□ -1.3
CLK3-220ENST00000567992 LENEPQ9Y5L5 61 aa6.96□□□□□ -1.3
CLK3-220ENST00000567992 DNAH10Q8IVF4 4471 aa6.96□□□□□ -1.3
CLK3-220ENST00000567992 TEX48A0A1B0GUV7 120 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 TMEM218A2RU14 115 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 FAM74A7A6NL05 159 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 LYRM9A8MSI8 78 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 UMAD1C9J7I0 102 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 GPX1P07203 203 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 HTN1P15515 57 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 SULT1A2P50226 295 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 BLOC1S1P78537 153 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 ZNF493Q6ZR52 646 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 IQCF2Q8IXL9 164 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 LINC00612Q8N6U2 182 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 C11orf72Q8NBR9 251 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 MBD3L1Q8WWY6 194 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 LINC00476Q8WZB0 136 aa6.95□□□□□ -1.3
CLK3-220ENST00000567992 CARHSP1Q9Y2V2 147 aaKnown RBP6.95□□□□□ -1.3
CLK3-220ENST00000567992 DNAH2Q9P225 4427 aa6.94□□□□□ -1.3
CLK3-220ENST00000567992 DEFB131BA0A096LNP1 70 aa6.94□□□□□ -1.3
CLK3-220ENST00000567992 SERTM2A0A1B0GWG4 89 aa6.94□□□□□ -1.3
CLK3-220ENST00000567992 UBE2G2P60604 165 aa6.94□□□□□ -1.3
CLK3-220ENST00000567992 SUMO1P63165 101 aaKnown RBP6.94□□□□□ -1.3
CLK3-220ENST00000567992 Q6AWC8 147 aa6.94□□□□□ -1.3
CLK3-220ENST00000567992 DPPA3Q6W0C5 159 aa6.94□□□□□ -1.3
CLK3-220ENST00000567992 LYPD6BQ8NI32 183 aa6.94□□□□□ -1.3
CLK3-220ENST00000567992 FAM213BQ8TBF2 198 aa6.94□□□□□ -1.3
CLK3-220ENST00000567992 SGK494Q96LW2 274 aa6.94□□□□□ -1.3
CLK3-220ENST00000567992 TP53TG3Q9ULZ0 132 aa6.94□□□□□ -1.3
CLK3-220ENST00000567992 APLNQ9ULZ1 77 aa6.94□□□□□ -1.3
CLK3-220ENST00000567992 EPDR1Q9UM22 224 aa6.94□□□□□ -1.3
CLK3-220ENST00000567992 IGHV4-4A0A075B6R2 117 aa6.93□□□□□ -1.3
CLK3-220ENST00000567992 IGHV1OR15-1A0A075B7D0 117 aa6.93□□□□□ -1.3
CLK3-220ENST00000567992 IGLL5B9A064 214 aa6.93□□□□□ -1.3
CLK3-220ENST00000567992 APOC3P02656 99 aa6.93□□□□□ -1.3
CLK3-220ENST00000567992 DAD1P61803 113 aa6.93□□□□□ -1.3
CLK3-220ENST00000567992 ANXA2RQ3ZCQ2 193 aa6.93□□□□□ -1.3
CLK3-220ENST00000567992 SVBPQ8N300 66 aa6.93□□□□□ -1.3
CLK3-220ENST00000567992 CYB561D1Q8N8Q1 229 aa6.93□□□□□ -1.3
CLK3-220ENST00000567992 TMEM75Q8N9X5 138 aa6.93□□□□□ -1.3
CLK3-220ENST00000567992 ATG101Q9BSB4 218 aa6.93□□□□□ -1.3
CLK3-220ENST00000567992 NOP10Q9NPE3 64 aaKnown RBP6.93□□□□□ -1.3
CLK3-220ENST00000567992 TIMM8BQ9Y5J9 83 aaPredicted RBP6.93□□□□□ -1.3
CLK3-220ENST00000567992 FRAS1Q86XX4 4008 aa6.92□□□□□ -1.3
CLK3-220ENST00000567992 F6UZH7 168 aa6.92□□□□□ -1.3
CLK3-220ENST00000567992 RAB5CP51148 216 aa6.92□□□□□ -1.3
CLK3-220ENST00000567992 ZNF80P51504 273 aaPredicted RBP6.92□□□□□ -1.3
CLK3-220ENST00000567992 TCTAP57738 103 aa6.92□□□□□ -1.3
CLK3-220ENST00000567992 ATRAIDQ6UW56 229 aa6.92□□□□□ -1.3
CLK3-220ENST00000567992 SFT2D1Q8WV19 159 aa6.92□□□□□ -1.3
CLK3-220ENST00000567992 LINC00479Q96M42 142 aa6.92□□□□□ -1.3
CLK3-220ENST00000567992 C8orf49Q96NF6 230 aa6.92□□□□□ -1.3
CLK3-220ENST00000567992 SEC11CQ9BY50 192 aa6.92□□□□□ -1.3
CLK3-220ENST00000567992 NKX6-2Q9C056 277 aaPredicted RBP6.92□□□□□ -1.3
CLK3-220ENST00000567992 TREM1Q9NP99 234 aa6.92□□□□□ -1.3
CLK3-220ENST00000567992 PSG8Q9UQ74 426 aa6.92□□□□□ -1.3
CLK3-220ENST00000567992 ARL2-SNX15V9GYD0 113 aa6.92□□□□□ -1.3
CLK3-220ENST00000567992 EPPK1P58107 5090 aaKnown RBP6.91□□□□□ -1.3
CLK3-220ENST00000567992 A0A1B0GV50 99 aa6.91□□□□□ -1.3
CLK3-220ENST00000567992 CBY3A6NI87 242 aa6.91□□□□□ -1.3
CLK3-220ENST00000567992 PEX7O00628 323 aa6.91□□□□□ -1.3
CLK3-220ENST00000567992 DEFB130BP0DP73 79 aa6.91□□□□□ -1.3
CLK3-220ENST00000567992 DEFB130AP0DP74 79 aa6.91□□□□□ -1.3
CLK3-220ENST00000567992 ATP5G3P48201 142 aa6.91□□□□□ -1.3
CLK3-220ENST00000567992 TCL1AP56279 114 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms