RNA–Protein interactions for RNA: ENST00000561668.5

PKD1-223, Transcript of polycystin 1, transient receptor potential channel interacting, human

TSL 3

Gene PKD1, Length 665 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PKD1-223	ENST00000561668	SUMO1	P63165	101 aa	Known RBP	13.3	□□□□□ -0.28
PKD1-223	ENST00000561668	EIF5AL1	Q6IS14	154 aa	Known RBP	13.3	□□□□□ -0.28
PKD1-223	ENST00000561668	CMTM2	Q8TAZ6	248 aa		13.3	□□□□□ -0.28
PKD1-223	ENST00000561668	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	13.3	□□□□□ -0.28
PKD1-223	ENST00000561668	TRAV12-3	A0A0B4J271	114 aa		13.29	□□□□□ -0.28
PKD1-223	ENST00000561668	TCRA	P04437	139 aa		13.29	□□□□□ -0.28
PKD1-223	ENST00000561668	ZFP69	Q49AA0	526 aa		13.29	□□□□□ -0.28
PKD1-223	ENST00000561668	EPDR1	Q9UM22	224 aa		13.29	□□□□□ -0.28
PKD1-223	ENST00000561668	TRAV1-1	A0A0B4J248	108 aa		13.28	□□□□□ -0.28
PKD1-223	ENST00000561668	C7orf71	A4D174	169 aa		13.28	□□□□□ -0.28
PKD1-223	ENST00000561668	FAM74A7	A6NL05	159 aa		13.28	□□□□□ -0.28
PKD1-223	ENST00000561668	GPX1	P07203	203 aa		13.28	□□□□□ -0.28
PKD1-223	ENST00000561668	SULT1A2	P50226	295 aa		13.28	□□□□□ -0.28
PKD1-223	ENST00000561668	FGF8	P55075	233 aa	Predicted RBP	13.28	□□□□□ -0.28
PKD1-223	ENST00000561668	TMEM263	Q8WUH6	116 aa	Known RBP	13.28	□□□□□ -0.28
PKD1-223	ENST00000561668	PYGO2	Q9BRQ0	406 aa		13.28	□□□□□ -0.28
PKD1-223	ENST00000561668	FBLL1	A6NHQ2	334 aa	Known RBP	13.27	□□□□□ -0.29
PKD1-223	ENST00000561668		P0DMU3	169 aa		13.27	□□□□□ -0.29
PKD1-223	ENST00000561668	FAM231A	P0DMU4	169 aa		13.27	□□□□□ -0.29
PKD1-223	ENST00000561668	FAM231C	P0DMU5	169 aa		13.27	□□□□□ -0.29
PKD1-223	ENST00000561668	PRR9	Q5T870	116 aa		13.27	□□□□□ -0.29
PKD1-223	ENST00000561668	GOLT1A	Q6ZVE7	132 aa		13.27	□□□□□ -0.29
PKD1-223	ENST00000561668	FAM213B	Q8TBF2	198 aa		13.27	□□□□□ -0.29
PKD1-223	ENST00000561668	RNASE8	Q8TDE3	154 aa	Known RBP	13.27	□□□□□ -0.29
PKD1-223	ENST00000561668	IGLV2-11	P01706	119 aa		13.26	□□□□□ -0.29
PKD1-223	ENST00000561668	RNASE4	P34096	147 aa	Known RBP	13.26	□□□□□ -0.29
PKD1-223	ENST00000561668	GNG5	P63218	68 aa		13.26	□□□□□ -0.29
PKD1-223	ENST00000561668		Q6AWC8	147 aa		13.26	□□□□□ -0.29
PKD1-223	ENST00000561668		Q8TAT8	98 aa		13.26	□□□□□ -0.29
PKD1-223	ENST00000561668	SFT2D1	Q8WV19	159 aa		13.26	□□□□□ -0.29
PKD1-223	ENST00000561668	TVP23C	Q96ET8	276 aa		13.26	□□□□□ -0.29
PKD1-223	ENST00000561668	NOP10	Q9NPE3	64 aa	Known RBP	13.26	□□□□□ -0.29
PKD1-223	ENST00000561668	CBY3	A6NI87	242 aa		13.25	□□□□□ -0.29
PKD1-223	ENST00000561668	SNURFL	B1AK76	121 aa		13.25	□□□□□ -0.29
PKD1-223	ENST00000561668	H2AFB1	P0C5Y9	115 aa		13.25	□□□□□ -0.29
PKD1-223	ENST00000561668	BTN1A1	Q13410	526 aa		13.25	□□□□□ -0.29
PKD1-223	ENST00000561668	ANXA2R	Q3ZCQ2	193 aa		13.25	□□□□□ -0.29
PKD1-223	ENST00000561668	TCEAL7	Q9BRU2	100 aa		13.25	□□□□□ -0.29
PKD1-223	ENST00000561668	ATG101	Q9BSB4	218 aa		13.25	□□□□□ -0.29
PKD1-223	ENST00000561668	TRAV8-1	A0A0A6YYK1	113 aa		13.24	□□□□□ -0.29
PKD1-223	ENST00000561668	ATP5G1	P05496	136 aa		13.24	□□□□□ -0.29
PKD1-223	ENST00000561668	ATP5G3	P48201	142 aa		13.24	□□□□□ -0.29
PKD1-223	ENST00000561668	CYB561D1	Q8N8Q1	229 aa		13.24	□□□□□ -0.29
PKD1-223	ENST00000561668	TMEM75	Q8N9X5	138 aa		13.24	□□□□□ -0.29
PKD1-223	ENST00000561668	HIST1H2BA	Q96A08	127 aa		13.24	□□□□□ -0.29
PKD1-223	ENST00000561668	PLEC	Q15149	4684 aa	Known RBP	13.23	□□□□□ -0.29
PKD1-223	ENST00000561668		F5H768	121 aa		13.23	□□□□□ -0.29
PKD1-223	ENST00000561668	IQCF2	Q8IXL9	164 aa		13.23	□□□□□ -0.29
PKD1-223	ENST00000561668		K7EQM0	130 aa		13.22	□□□□□ -0.29
PKD1-223	ENST00000561668	PPT1	P50897	306 aa		13.22	□□□□□ -0.29
PKD1-223	ENST00000561668	TMEM88	Q6PEY1	159 aa		13.22	□□□□□ -0.29
PKD1-223	ENST00000561668	UBE2DNL	Q8IWF7	75 aa		13.22	□□□□□ -0.29
PKD1-223	ENST00000561668	LINC00612	Q8N6U2	182 aa		13.22	□□□□□ -0.29
PKD1-223	ENST00000561668	PSG8	Q9UQ74	426 aa		13.22	□□□□□ -0.29
PKD1-223	ENST00000561668	KLF12	Q9Y4X4	402 aa		13.22	□□□□□ -0.29
PKD1-223	ENST00000561668	HYDIN	Q4G0P3	5121 aa		13.21	□□□□□ -0.29
PKD1-223	ENST00000561668	RGS13	O14921	159 aa		13.21	□□□□□ -0.29
PKD1-223	ENST00000561668	UBE2G2	P60604	165 aa		13.21	□□□□□ -0.29
PKD1-223	ENST00000561668	FLI1	Q01543	452 aa	Predicted RBP	13.21	□□□□□ -0.29
PKD1-223	ENST00000561668		Q6ZQT7	251 aa		13.21	□□□□□ -0.29
PKD1-223	ENST00000561668	EIF4E3	Q8N5X7	224 aa	Known RBP	13.21	□□□□□ -0.29
PKD1-223	ENST00000561668	POM121L12	Q8N7R1	296 aa		13.21	□□□□□ -0.29
PKD1-223	ENST00000561668	C15orf53	Q8NAA6	179 aa		13.21	□□□□□ -0.29
PKD1-223	ENST00000561668	C11orf72	Q8NBR9	251 aa		13.21	□□□□□ -0.29
PKD1-223	ENST00000561668	ZNF680	Q8NEM1	530 aa		13.21	□□□□□ -0.29
PKD1-223	ENST00000561668	RPH3AL	Q9UNE2	315 aa		13.21	□□□□□ -0.29
PKD1-223	ENST00000561668	DNAH1	Q9P2D7	4330 aa		13.2	□□□□□ -0.3
PKD1-223	ENST00000561668	TRBV6-1	A0A0K0K1D8	114 aa		13.2	□□□□□ -0.3
PKD1-223	ENST00000561668	PEX7	O00628	323 aa		13.2	□□□□□ -0.3
PKD1-223	ENST00000561668	DAZ2	Q13117	558 aa	Known RBP	13.2	□□□□□ -0.3
PKD1-223	ENST00000561668	TDRG1	Q3Y452	100 aa		13.2	□□□□□ -0.3
PKD1-223	ENST00000561668	COX8C	Q7Z4L0	72 aa		13.2	□□□□□ -0.3
PKD1-223	ENST00000561668	TREM1	Q9NP99	234 aa		13.2	□□□□□ -0.3
PKD1-223	ENST00000561668	TP53TG3	Q9ULZ0	132 aa		13.2	□□□□□ -0.3
PKD1-223	ENST00000561668	IGHV1OR15-1	A0A075B7D0	117 aa		13.19	□□□□□ -0.3
PKD1-223	ENST00000561668	PAGE4	O60829	102 aa		13.19	□□□□□ -0.3
PKD1-223	ENST00000561668	CCL20	P78556	96 aa		13.19	□□□□□ -0.3
PKD1-223	ENST00000561668	IBA57	Q5T440	356 aa	Known RBP	13.19	□□□□□ -0.3
PKD1-223	ENST00000561668	ALMS1	Q8TCU4	4167 aa		13.18	□□□□□ -0.3
PKD1-223	ENST00000561668	GAGE12B	A1L429	117 aa		13.18	□□□□□ -0.3
PKD1-223	ENST00000561668	GAGE7	O76087	117 aa		13.18	□□□□□ -0.3
PKD1-223	ENST00000561668	IFNA7	P01567	189 aa		13.18	□□□□□ -0.3
PKD1-223	ENST00000561668	GAGE12F	P0CL80	117 aa		13.18	□□□□□ -0.3
PKD1-223	ENST00000561668	GAGE12G	P0CL81	117 aa		13.18	□□□□□ -0.3
PKD1-223	ENST00000561668	GAGE12I	P0CL82	117 aa		13.18	□□□□□ -0.3
PKD1-223	ENST00000561668	NKX2-5	P52952	324 aa	Predicted RBP	13.18	□□□□□ -0.3
PKD1-223	ENST00000561668	SAPCD1	Q5SSQ6	148 aa		13.18	□□□□□ -0.3
PKD1-223	ENST00000561668	LINC00479	Q96M42	142 aa		13.18	□□□□□ -0.3
PKD1-223	ENST00000561668		F6UZH7	168 aa		13.17	□□□□□ -0.3
PKD1-223	ENST00000561668	OR5I1	Q13606	314 aa		13.17	□□□□□ -0.3
PKD1-223	ENST00000561668	SGK494	Q96LW2	274 aa		13.17	□□□□□ -0.3
PKD1-223	ENST00000561668	TXNDC17	Q9BRA2	123 aa		13.17	□□□□□ -0.3
PKD1-223	ENST00000561668	NDFIP1	Q9BT67	221 aa		13.17	□□□□□ -0.3
PKD1-223	ENST00000561668	MANBAL	Q9NQG1	85 aa		13.17	□□□□□ -0.3
PKD1-223	ENST00000561668	GSN-AS1	Q9NRJ2	163 aa		13.17	□□□□□ -0.3
PKD1-223	ENST00000561668	TRAV21	A0A0B4J279	112 aa		13.16	□□□□□ -0.3
PKD1-223	ENST00000561668	TEX46	H3BTG2	121 aa		13.16	□□□□□ -0.3
PKD1-223	ENST00000561668	NUDT3	O95989	172 aa		13.16	□□□□□ -0.3
PKD1-223	ENST00000561668	TCL1A	P56279	114 aa		13.16	□□□□□ -0.3
PKD1-223	ENST00000561668	RNF212	Q495C1	297 aa		13.16	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms