RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 IGKV1-5P01602 117 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 SERPINE1P05121 402 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 KDELR1P24390 212 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 SSR2P43308 183 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 GNG10P50151 68 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 HBA1P69905 142 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 LHFPL1Q86WI0 220 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 GDPD1Q8N9F7 314 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 ACOT12Q8WYK0 555 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 IMMP2LQ96T52 175 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 ZNF682O95780 498 aa2.4□□□□□ -2.03
VPS13C-210ENST00000561258 BPGMP07738 259 aa2.4□□□□□ -2.03
VPS13C-210ENST00000561258 MPC1LP0DKB6 136 aa2.4□□□□□ -2.03
VPS13C-210ENST00000561258 GZMHP20718 246 aa2.4□□□□□ -2.03
VPS13C-210ENST00000561258 RPS3P23396 243 aaKnown RBP eCLIP2.4□□□□□ -2.03
VPS13C-210ENST00000561258 HLA-DMBP28068 263 aa2.4□□□□□ -2.03
VPS13C-210ENST00000561258 RPL18Q07020 188 aaKnown RBP2.4□□□□□ -2.03
VPS13C-210ENST00000561258 SLC36A1Q7Z2H8 476 aa2.4□□□□□ -2.03
VPS13C-210ENST00000561258 TOMM6Q96B49 74 aa2.4□□□□□ -2.03
VPS13C-210ENST00000561258 PRRT1Q99946 306 aa2.4□□□□□ -2.03
VPS13C-210ENST00000561258 DERL1Q9BUN8 251 aa2.4□□□□□ -2.03
VPS13C-210ENST00000561258 ENY2Q9NPA8 101 aa2.4□□□□□ -2.03
VPS13C-210ENST00000561258 OPTCQ9UBM4 332 aa2.4□□□□□ -2.03
VPS13C-210ENST00000561258 FLG2Q5D862 2391 aaPredicted RBP2.4□□□□□ -2.03
VPS13C-210ENST00000561258 MYCBP2O75592 4640 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 NUPR2A6NF83 97 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 C8GP07360 202 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 HIST1H2BOP23527 126 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 G0S2P27469 103 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 HIST1H2BBP33778 126 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 FUSP35637 526 aaKnown RBP eCLIP2.39□□□□□ -2.03
VPS13C-210ENST00000561258 HIST1H2BDP58876 126 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 HIST1H2BCP62807 126 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 PSPHP78330 225 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 KRR1Q13601 381 aaKnown RBP2.39□□□□□ -2.03
VPS13C-210ENST00000561258 HIST2H2BEQ16778 126 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.39□□□□□ -2.03
VPS13C-210ENST00000561258 IBA57Q5T440 356 aaKnown RBP2.39□□□□□ -2.03
VPS13C-210ENST00000561258 AADACL3Q5VUY0 350 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 ZNF705AQ6ZN79 300 aaPredicted RBP2.39□□□□□ -2.03
VPS13C-210ENST00000561258 ZNF767PQ75MW2 155 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 LYG2Q86SG7 212 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 PDZD9Q8IXQ8 264 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 OR52R1Q8NGF1 315 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 HIST1H2BHQ93079 126 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 ZHX1-C8orf76Q96EF9 292 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 HIST1H2BNQ99877 126 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 HIST1H2BMQ99879 126 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 Q9BRP9 147 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 PARVBQ9HBI1 364 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 TIMM22Q9Y584 194 aa2.39□□□□□ -2.03
VPS13C-210ENST00000561258 TRAV9-1A0A075B6T8 112 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 hCG_1818297A0A087WSY0 165 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 GGT3PA6NGU5 568 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 A8MT66 165 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 H3BT86 120 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 H3BUX3 64 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 IGF2P01344 180 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 IGKV4-1P06312 121 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 LGALS1P09382 135 aaKnown RBP2.38□□□□□ -2.03
VPS13C-210ENST00000561258 RBP1P09455 135 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 CBR1P16152 277 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 GLRXP35754 106 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 RPL28P46779 137 aaKnown RBP2.38□□□□□ -2.03
VPS13C-210ENST00000561258 RAB14P61106 215 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 RPL19P84098 196 aaKnown RBP2.38□□□□□ -2.03
VPS13C-210ENST00000561258 SS18Q15532 418 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 MOGQ16653 247 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 TMEM155Q4W5P6 130 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 RPL22L1Q6P5R6 122 aaKnown RBP2.38□□□□□ -2.03
VPS13C-210ENST00000561258 LRRC28Q86X40 367 aaPredicted RBP2.38□□□□□ -2.03
VPS13C-210ENST00000561258 DYNAPQ8N1N2 210 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 OR11H6Q8NGC7 330 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 OR4X2Q8NGF9 303 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 OR51T1Q8NGJ9 327 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 OR5J2Q8NH18 312 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 H1FXQ92522 213 aaKnown RBP2.38□□□□□ -2.03
VPS13C-210ENST00000561258 HHLA3Q9XRX5 114 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 DSPPQ9NZW4 1301 aa2.38□□□□□ -2.03
VPS13C-210ENST00000561258 IGLV3-32A0A0A0MS00 114 aa2.37□□□□□ -2.03
VPS13C-210ENST00000561258 FABP5P3A8MUU1 101 aa2.37□□□□□ -2.03
VPS13C-210ENST00000561258 CREBL2O60519 120 aaPredicted RBP2.37□□□□□ -2.03
VPS13C-210ENST00000561258 CST8O60676 142 aa2.37□□□□□ -2.03
VPS13C-210ENST00000561258 HIST1H4AP62805 103 aaKnown RBP2.37□□□□□ -2.03
VPS13C-210ENST00000561258 MEF2BQ02080 365 aaPredicted RBP2.37□□□□□ -2.03
VPS13C-210ENST00000561258 ARHGAP11BQ3KRB8 267 aa2.37□□□□□ -2.03
VPS13C-210ENST00000561258 PABPC1L2AQ5JQF8 200 aa2.37□□□□□ -2.03
VPS13C-210ENST00000561258 SLC35E3Q7Z769 313 aa2.37□□□□□ -2.03
VPS13C-210ENST00000561258 TMED4Q7Z7H5 227 aa2.37□□□□□ -2.03
VPS13C-210ENST00000561258 OR8B3Q8NGG8 313 aa2.37□□□□□ -2.03
VPS13C-210ENST00000561258 SLC7A6Q92536 515 aa2.37□□□□□ -2.03
VPS13C-210ENST00000561258 CCDC90BQ9GZT6 254 aa2.37□□□□□ -2.03
VPS13C-210ENST00000561258 NAT8Q9UHE5 227 aa2.37□□□□□ -2.03
VPS13C-210ENST00000561258 CYSLTR1Q9Y271 337 aa2.37□□□□□ -2.03
VPS13C-210ENST00000561258 MUC2Q02817 5179 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 TRAV7A0A075B6U4 112 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 PROSCO94903 275 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 IGHV3-7P01780 117 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 SULT1A3P0DMM9 295 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 SULT1A4P0DMN0 295 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms