RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 TRAV8-1A0A0A6YYK1 113 aa9.31□□□□□ -0.92
NEDD8-208ENST00000560427 PEX7O00628 323 aa9.31□□□□□ -0.92
NEDD8-208ENST00000560427 RNASE4P34096 147 aaKnown RBP9.31□□□□□ -0.92
NEDD8-208ENST00000560427 EMP1P54849 157 aa9.31□□□□□ -0.92
NEDD8-208ENST00000560427 FLI1Q01543 452 aaPredicted RBP9.31□□□□□ -0.92
NEDD8-208ENST00000560427 PMS2P11Q13670 270 aa9.31□□□□□ -0.92
NEDD8-208ENST00000560427 ANXA2RQ3ZCQ2 193 aa9.31□□□□□ -0.92
NEDD8-208ENST00000560427 SAPCD1Q5SSQ6 148 aa9.31□□□□□ -0.92
NEDD8-208ENST00000560427 FAM222AQ5U5X8 452 aa9.31□□□□□ -0.92
NEDD8-208ENST00000560427 CEMP1Q6PRD7 247 aaPredicted RBP9.31□□□□□ -0.92
NEDD8-208ENST00000560427 MANBALQ9NQG1 85 aa9.31□□□□□ -0.92
NEDD8-208ENST00000560427 CELA1Q9UNI1 258 aa9.31□□□□□ -0.92
NEDD8-208ENST00000560427 PSG8Q9UQ74 426 aa9.31□□□□□ -0.92
NEDD8-208ENST00000560427 KLK5Q9Y337 293 aaPredicted RBP9.31□□□□□ -0.92
NEDD8-208ENST00000560427 PLAC8L1A1L4L8 177 aa9.3□□□□□ -0.92
NEDD8-208ENST00000560427 RGS13O14921 159 aa9.3□□□□□ -0.92
NEDD8-208ENST00000560427 PRR9Q5T870 116 aa9.3□□□□□ -0.92
NEDD8-208ENST00000560427 CST9LP1Q5W188 147 aa9.3□□□□□ -0.92
NEDD8-208ENST00000560427 EIF4E3Q8N5X7 224 aaKnown RBP9.3□□□□□ -0.92
NEDD8-208ENST00000560427 PHLDA1Q8WV24 401 aaPredicted RBP9.3□□□□□ -0.92
NEDD8-208ENST00000560427 TXNDC17Q9BRA2 123 aa9.3□□□□□ -0.92
NEDD8-208ENST00000560427 TREM1Q9NP99 234 aa9.3□□□□□ -0.92
NEDD8-208ENST00000560427 TIMM8BQ9Y5J9 83 aaPredicted RBP9.3□□□□□ -0.92
NEDD8-208ENST00000560427 TRAV10A0A0B4J240 114 aa9.29□□□□□ -0.92
NEDD8-208ENST00000560427 TRAV21A0A0B4J279 112 aa9.29□□□□□ -0.92
NEDD8-208ENST00000560427 PAGE4O60829 102 aa9.29□□□□□ -0.92
NEDD8-208ENST00000560427 IGLV2-11P01706 119 aa9.29□□□□□ -0.92
NEDD8-208ENST00000560427 HTN1P15515 57 aa9.29□□□□□ -0.92
NEDD8-208ENST00000560427 AZU1P20160 251 aa9.29□□□□□ -0.92
NEDD8-208ENST00000560427 TAGLN2P37802 199 aaKnown RBP9.29□□□□□ -0.92
NEDD8-208ENST00000560427 NKX2-5P52952 324 aaPredicted RBP9.29□□□□□ -0.92
NEDD8-208ENST00000560427 C12orf74Q32Q52 190 aa9.29□□□□□ -0.92
NEDD8-208ENST00000560427 IBA57Q5T440 356 aaKnown RBP9.29□□□□□ -0.92
NEDD8-208ENST00000560427 Q6ZTC4 211 aa9.29□□□□□ -0.92
NEDD8-208ENST00000560427 FMC1Q96HJ9 113 aa9.29□□□□□ -0.92
NEDD8-208ENST00000560427 IGHV1OR15-1A0A075B7D0 117 aa9.28□□□□□ -0.92
NEDD8-208ENST00000560427 TRBV6-1A0A0K0K1D8 114 aa9.28□□□□□ -0.92
NEDD8-208ENST00000560427 A0A1B0GV50 99 aa9.28□□□□□ -0.92
NEDD8-208ENST00000560427 CBY3A6NI87 242 aa9.28□□□□□ -0.92
NEDD8-208ENST00000560427 SNURFLB1AK76 121 aa9.28□□□□□ -0.92
NEDD8-208ENST00000560427 IFNA1P01562 189 aa9.28□□□□□ -0.92
NEDD8-208ENST00000560427 TCTAP57738 103 aa9.28□□□□□ -0.92
NEDD8-208ENST00000560427 TDRG1Q3Y452 100 aa9.28□□□□□ -0.92
NEDD8-208ENST00000560427 Q86TA4 180 aa9.28□□□□□ -0.92
NEDD8-208ENST00000560427 TVP23CQ96ET8 276 aa9.28□□□□□ -0.92
NEDD8-208ENST00000560427 KLF12Q9Y4X4 402 aa9.28□□□□□ -0.92
NEDD8-208ENST00000560427 S100A9P06702 114 aaKnown RBP9.27□□□□□ -0.93
NEDD8-208ENST00000560427 AKR1C3P42330 323 aa9.27□□□□□ -0.93
NEDD8-208ENST00000560427 ATP5G3P48201 142 aa9.27□□□□□ -0.93
NEDD8-208ENST00000560427 DAD1P61803 113 aa9.27□□□□□ -0.93
NEDD8-208ENST00000560427 UBE2G1P62253 170 aa9.27□□□□□ -0.93
NEDD8-208ENST00000560427 BLOC1S1P78537 153 aa9.27□□□□□ -0.93
NEDD8-208ENST00000560427 DAZ2Q13117 558 aaKnown RBP9.27□□□□□ -0.93
NEDD8-208ENST00000560427 SMUG1Q53HV7 270 aa9.27□□□□□ -0.93
NEDD8-208ENST00000560427 FAM159AQ6UWV7 190 aa9.27□□□□□ -0.93
NEDD8-208ENST00000560427 PRNTQ86SH4 94 aa9.27□□□□□ -0.93
NEDD8-208ENST00000560427 C2CD4CQ8TF44 421 aa9.27□□□□□ -0.93
NEDD8-208ENST00000560427 GNG13Q9P2W3 67 aa9.27□□□□□ -0.93
NEDD8-208ENST00000560427 ZFP30Q9Y2G7 519 aa9.27□□□□□ -0.93
NEDD8-208ENST00000560427 CSMD3Q7Z407 3707 aa9.26□□□□□ -0.93
NEDD8-208ENST00000560427 STARD9Q9P2P6 4700 aa9.26□□□□□ -0.93
NEDD8-208ENST00000560427 TRGV11A0A075B6L2 103 aa9.26□□□□□ -0.93
NEDD8-208ENST00000560427 PRM2P04554 102 aa9.26□□□□□ -0.93
NEDD8-208ENST00000560427 PFN1P07737 140 aaKnown RBP9.26□□□□□ -0.93
NEDD8-208ENST00000560427 TMEM183BQ1AE95 376 aa9.26□□□□□ -0.93
NEDD8-208ENST00000560427 ALKAL2Q6UX46 152 aa9.26□□□□□ -0.93
NEDD8-208ENST00000560427 COX8CQ7Z4L0 72 aa9.26□□□□□ -0.93
NEDD8-208ENST00000560427 C11orf72Q8NBR9 251 aa9.26□□□□□ -0.93
NEDD8-208ENST00000560427 KCNS1Q96KK3 526 aa9.26□□□□□ -0.93
NEDD8-208ENST00000560427 SGK494Q96LW2 274 aa9.26□□□□□ -0.93
NEDD8-208ENST00000560427 DEFB131BA0A096LNP1 70 aa9.25□□□□□ -0.93
NEDD8-208ENST00000560427 TCL1AP56279 114 aa9.25□□□□□ -0.93
NEDD8-208ENST00000560427 ZNF415Q09FC8 603 aa9.25□□□□□ -0.93
NEDD8-208ENST00000560427 LINC00612Q8N6U2 182 aa9.25□□□□□ -0.93
NEDD8-208ENST00000560427 C11orf52Q96A22 123 aa9.25□□□□□ -0.93
NEDD8-208ENST00000560427 FAM210BQ96KR6 192 aa9.25□□□□□ -0.93
NEDD8-208ENST00000560427 LINC00479Q96M42 142 aa9.25□□□□□ -0.93
NEDD8-208ENST00000560427 NOP10Q9NPE3 64 aaKnown RBP9.25□□□□□ -0.93
NEDD8-208ENST00000560427 TP53TG3Q9ULZ0 132 aa9.25□□□□□ -0.93
NEDD8-208ENST00000560427 TRAV34A0A0B4J273 112 aa9.24□□□□□ -0.93
NEDD8-208ENST00000560427 GCGP01275 180 aa9.24□□□□□ -0.93
NEDD8-208ENST00000560427 LTAP01374 205 aa9.24□□□□□ -0.93
NEDD8-208ENST00000560427 BCL2P10415 239 aa9.24□□□□□ -0.93
NEDD8-208ENST00000560427 CCL20P78556 96 aa9.24□□□□□ -0.93
NEDD8-208ENST00000560427 MEF2BQ02080 365 aaPredicted RBP9.24□□□□□ -0.93
NEDD8-208ENST00000560427 ZNF767PQ75MW2 155 aa9.24□□□□□ -0.93
NEDD8-208ENST00000560427 C18orf15Q96N68 181 aa9.24□□□□□ -0.93
NEDD8-208ENST00000560427 C8orf49Q96NF6 230 aa9.24□□□□□ -0.93
NEDD8-208ENST00000560427 GSN-AS1Q9NRJ2 163 aa9.24□□□□□ -0.93
NEDD8-208ENST00000560427 BOLA1Q9Y3E2 137 aa9.24□□□□□ -0.93
NEDD8-208ENST00000560427 SCO2A0A1W2PP80 73 aa9.23□□□□□ -0.93
NEDD8-208ENST00000560427 PDE6DO43924 150 aa9.23□□□□□ -0.93
NEDD8-208ENST00000560427 DEFB130BP0DP73 79 aa9.23□□□□□ -0.93
NEDD8-208ENST00000560427 DEFB130AP0DP74 79 aa9.23□□□□□ -0.93
NEDD8-208ENST00000560427 LGALS9BQ3B8N2 356 aa9.23□□□□□ -0.93
NEDD8-208ENST00000560427 MUC21Q5SSG8 566 aa9.23□□□□□ -0.93
NEDD8-208ENST00000560427 Q6ZQT7 251 aa9.23□□□□□ -0.93
NEDD8-208ENST00000560427 LYPD6BQ8NI32 183 aa9.23□□□□□ -0.93
NEDD8-208ENST00000560427 SDF2L1Q9HCN8 221 aa9.23□□□□□ -0.93
NEDD8-208ENST00000560427 VAX2Q9UIW0 290 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms