RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	GATA1	P15976	413 aa	Predicted RBP	12.51	□□□□□ -0.41
SHMT2-231	ENST00000557433	ORMDL2	Q53FV1	153 aa		12.51	□□□□□ -0.41
SHMT2-231	ENST00000557433	PRR30	Q53SZ7	412 aa	Predicted RBP	12.51	□□□□□ -0.41
SHMT2-231	ENST00000557433	FOXI2	Q6ZQN5	318 aa		12.51	□□□□□ -0.41
SHMT2-231	ENST00000557433	NHP2	Q9NX24	153 aa	Known RBP	12.51	□□□□□ -0.41
SHMT2-231	ENST00000557433	CLPSL1	A2RUU4	121 aa		12.5	□□□□□ -0.41
SHMT2-231	ENST00000557433		H7C1H1	209 aa		12.5	□□□□□ -0.41
SHMT2-231	ENST00000557433	LOC400499	M0QZD8	3231 aa		12.5	□□□□□ -0.41
SHMT2-231	ENST00000557433	IGLL5	B9A064	214 aa		12.5	□□□□□ -0.41
SHMT2-231	ENST00000557433		F8VRH5	84 aa		12.5	□□□□□ -0.41
SHMT2-231	ENST00000557433	PPIF	P30405	207 aa	Known RBP	12.5	□□□□□ -0.41
SHMT2-231	ENST00000557433	SPANXN1	Q5VSR9	72 aa		12.5	□□□□□ -0.41
SHMT2-231	ENST00000557433	C11orf71	Q6IPW1	123 aa		12.5	□□□□□ -0.41
SHMT2-231	ENST00000557433	RNF182	Q8N6D2	247 aa		12.5	□□□□□ -0.41
SHMT2-231	ENST00000557433	C11orf21	Q9P2W6	132 aa		12.5	□□□□□ -0.41
SHMT2-231	ENST00000557433		U3KQE9	123 aa		12.5	□□□□□ -0.41
SHMT2-231	ENST00000557433	TRAV8-2	A0A0B4J237	113 aa		12.49	□□□□□ -0.41
SHMT2-231	ENST00000557433	FAM90A27P	A6NNH2	459 aa		12.49	□□□□□ -0.41
SHMT2-231	ENST00000557433	TRGV3	P03979	118 aa		12.49	□□□□□ -0.41
SHMT2-231	ENST00000557433	C20orf78	Q9BR46	151 aa		12.49	□□□□□ -0.41
SHMT2-231	ENST00000557433	SMIM2	Q9BVW6	85 aa		12.49	□□□□□ -0.41
SHMT2-231	ENST00000557433		A0A1B0GWB2	263 aa		12.49	□□□□□ -0.41
SHMT2-231	ENST00000557433	RPL24	P83731	157 aa	Known RBP	12.49	□□□□□ -0.41
SHMT2-231	ENST00000557433	C12orf74	Q32Q52	190 aa		12.49	□□□□□ -0.41
SHMT2-231	ENST00000557433	C8orf86	Q6ZUL3	223 aa		12.49	□□□□□ -0.41
SHMT2-231	ENST00000557433	ZNF479	Q96JC4	524 aa		12.49	□□□□□ -0.41
SHMT2-231	ENST00000557433	TTTY13	Q9BZ97	58 aa		12.49	□□□□□ -0.41
SHMT2-231	ENST00000557433	SIRPD	Q9H106	197 aa		12.49	□□□□□ -0.41
SHMT2-231	ENST00000557433	UFC1	Q9Y3C8	167 aa		12.49	□□□□□ -0.41
SHMT2-231	ENST00000557433	C9orf139	Q6ZV77	190 aa		12.48	□□□□□ -0.41
SHMT2-231	ENST00000557433	SPEN	Q96T58	3664 aa	Known RBP	12.48	□□□□□ -0.41
SHMT2-231	ENST00000557433	CENPVL3	A0A0U1RRI6	287 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433		K7ERJ3	54 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433	PPP1R17	O96001	155 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433	MED14OS	P0DP75	135 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433	UBE2E1	P51965	193 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433	ECSCR	Q19T08	205 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433	CCDC140	Q96MF4	163 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433	TEX48	A0A1B0GUV7	120 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433	OR11H12	B2RN74	326 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433	ATP6V0E1	O15342	81 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433	OR11H1	Q8NG94	326 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433	OR11H2	Q8NH07	326 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433	TOMM6	Q96B49	74 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433	LINC00477	Q96M19	166 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433	HIST1H4G	Q99525	98 aa		12.47	□□□□□ -0.41
SHMT2-231	ENST00000557433	TRBV7-3	A0A075B6L6	115 aa		12.46	□□□□□ -0.42
SHMT2-231	ENST00000557433	IGHV3OR16-8	A0A075B7F1	116 aa		12.46	□□□□□ -0.42
SHMT2-231	ENST00000557433	IGHV3-35	A0A0C4DH35	117 aa		12.46	□□□□□ -0.42
SHMT2-231	ENST00000557433	LINC01549	A6NIU2	74 aa		12.46	□□□□□ -0.42
SHMT2-231	ENST00000557433		M0R381	172 aa		12.46	□□□□□ -0.42
SHMT2-231	ENST00000557433	CLEC19A	Q6UXS0	136 aa		12.46	□□□□□ -0.42
SHMT2-231	ENST00000557433	MAPKAPK5-AS1	Q8N8E1	139 aa		12.46	□□□□□ -0.42
SHMT2-231	ENST00000557433	CNOT1	A5YKK6	2376 aa	Known RBP	12.45	□□□□□ -0.42
SHMT2-231	ENST00000557433	MYMX	A0A1B0GTQ4	84 aa		12.45	□□□□□ -0.42
SHMT2-231	ENST00000557433		K7ENP7	123 aa		12.45	□□□□□ -0.42
SHMT2-231	ENST00000557433	LY6H	O94772	140 aa		12.45	□□□□□ -0.42
SHMT2-231	ENST00000557433	RRN3P1	Q2M238	152 aa		12.45	□□□□□ -0.42
SHMT2-231	ENST00000557433	CHTOP	Q9Y3Y2	248 aa	Known RBP	12.45	□□□□□ -0.42
SHMT2-231	ENST00000557433	ZNF318	Q5VUA4	2279 aa		12.45	□□□□□ -0.42
SHMT2-231	ENST00000557433	EP300	Q09472	2414 aa	Predicted RBP	12.45	□□□□□ -0.42
SHMT2-231	ENST00000557433	SAMD13	Q5VXD3	122 aa		12.45	□□□□□ -0.42
SHMT2-231	ENST00000557433	SPANXB1	Q9NS25	103 aa	Predicted RBP	12.45	□□□□□ -0.42
SHMT2-231	ENST00000557433	CEP250	Q9BV73	2442 aa		12.44	□□□□□ -0.42
SHMT2-231	ENST00000557433	SUMO2	P61956	95 aa	Known RBP	12.44	□□□□□ -0.42
SHMT2-231	ENST00000557433	CD300E	Q496F6	205 aa	Predicted RBP	12.44	□□□□□ -0.42
SHMT2-231	ENST00000557433	SCGB3A1	Q96QR1	104 aa		12.44	□□□□□ -0.42
SHMT2-231	ENST00000557433	SIGMAR1	Q99720	223 aa		12.44	□□□□□ -0.42
SHMT2-231	ENST00000557433	DPH3P1	Q9H4G8	78 aa		12.44	□□□□□ -0.42
SHMT2-231	ENST00000557433	POLE	Q07864	2286 aa		12.44	□□□□□ -0.42
SHMT2-231	ENST00000557433	PCNX1	Q96RV3	2341 aa		12.43	□□□□□ -0.42
SHMT2-231	ENST00000557433	TRAV26-2	A0A0B4J265	109 aa		12.43	□□□□□ -0.42
SHMT2-231	ENST00000557433	TRAV21	A0A0B4J279	112 aa		12.43	□□□□□ -0.42
SHMT2-231	ENST00000557433	OVOL1	O14753	267 aa		12.43	□□□□□ -0.42
SHMT2-231	ENST00000557433	GRN	P28799	593 aa	Known RBP	12.43	□□□□□ -0.42
SHMT2-231	ENST00000557433	ATP5G2	Q06055	141 aa		12.43	□□□□□ -0.42
SHMT2-231	ENST00000557433	NEXN-AS1	Q8NBZ9	246 aa		12.43	□□□□□ -0.42
SHMT2-231	ENST00000557433	ITLN2	Q8WWU7	325 aa	Predicted RBP	12.43	□□□□□ -0.42
SHMT2-231	ENST00000557433	C16orf92	Q96LL3	132 aa		12.43	□□□□□ -0.42
SHMT2-231	ENST00000557433	TMEM238L	A0A1B0GVL6	79 aa		12.43	□□□□□ -0.42
SHMT2-231	ENST00000557433		A6NJY4	79 aa		12.43	□□□□□ -0.42
SHMT2-231	ENST00000557433	FAM223B	A6NKX1	122 aa		12.43	□□□□□ -0.42
SHMT2-231	ENST00000557433	FAM223A	Q8IWN6	122 aa		12.43	□□□□□ -0.42
SHMT2-231	ENST00000557433	TRBV7-9	A0A0J9YWB2	115 aa		12.42	□□□□□ -0.42
SHMT2-231	ENST00000557433		H3BVH4	76 aa		12.42	□□□□□ -0.42
SHMT2-231	ENST00000557433	CCL21	O00585	134 aa		12.42	□□□□□ -0.42
SHMT2-231	ENST00000557433	CIDEA	O60543	219 aa		12.42	□□□□□ -0.42
SHMT2-231	ENST00000557433	ZFP36	P26651	326 aa	Known RBP	12.42	□□□□□ -0.42
SHMT2-231	ENST00000557433	EFNA4	P52798	201 aa		12.42	□□□□□ -0.42
SHMT2-231	ENST00000557433	GLMP	Q8WWB7	406 aa		12.42	□□□□□ -0.42
SHMT2-231	ENST00000557433	SELENOK	Q9Y6D0	94 aa		12.42	□□□□□ -0.42
SHMT2-231	ENST00000557433	IGHV3-66	A0A0C4DH42	116 aa		12.41	□□□□□ -0.42
SHMT2-231	ENST00000557433	GAGE13	Q4V321	117 aa		12.41	□□□□□ -0.42
SHMT2-231	ENST00000557433	ASIP	P42127	132 aa		12.41	□□□□□ -0.42
SHMT2-231	ENST00000557433	OR10J6P	Q8NGY7	276 aa		12.41	□□□□□ -0.42
SHMT2-231	ENST00000557433	AJUBA	Q96IF1	538 aa		12.41	□□□□□ -0.42
SHMT2-231	ENST00000557433	SPATA25	Q9BR10	227 aa		12.41	□□□□□ -0.42
SHMT2-231	ENST00000557433	APC2	O95996	2303 aa		12.4	□□□□□ -0.42
SHMT2-231	ENST00000557433	CRIP2	P52943	208 aa	Predicted RBP	12.4	□□□□□ -0.42
SHMT2-231	ENST00000557433	RPL32	P62910	135 aa	Known RBP	12.4	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms