RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 C16orf74Q96GX8 76 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 PYGO2Q9BRQ0 406 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 DKK2Q9UBU2 259 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 EPDR1Q9UM22 224 aa9.73□□□□□ -0.85
SHMT2-228ENST00000557302 A0A1B0GV50 99 aa9.72□□□□□ -0.85
SHMT2-228ENST00000557302 ZNF324O75467 553 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-228ENST00000557302 C12orf74Q32Q52 190 aa9.72□□□□□ -0.85
SHMT2-228ENST00000557302 Q6ZTC4 211 aa9.72□□□□□ -0.85
SHMT2-228ENST00000557302 ZNF767PQ75MW2 155 aa9.72□□□□□ -0.85
SHMT2-228ENST00000557302 ATG101Q9BSB4 218 aa9.72□□□□□ -0.85
SHMT2-228ENST00000557302 KLK5Q9Y337 293 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-228ENST00000557302 C11orf94C9JXX5 98 aa9.71□□□□□ -0.86
SHMT2-228ENST00000557302 SULT1A2P50226 295 aa9.71□□□□□ -0.86
SHMT2-228ENST00000557302 RNASE8Q8TDE3 154 aaKnown RBP9.71□□□□□ -0.86
SHMT2-228ENST00000557302 SGK494Q96LW2 274 aa9.71□□□□□ -0.86
SHMT2-228ENST00000557302 NDFIP1Q9BT67 221 aa9.71□□□□□ -0.86
SHMT2-228ENST00000557302 ARL2-SNX15V9GYD0 113 aa9.71□□□□□ -0.86
SHMT2-228ENST00000557302 RYR2Q92736 4967 aa9.71□□□□□ -0.86
SHMT2-228ENST00000557302 TRAV10A0A0B4J240 114 aa9.7□□□□□ -0.86
SHMT2-228ENST00000557302 PLAC8L1A1L4L8 177 aa9.7□□□□□ -0.86
SHMT2-228ENST00000557302 FBLL1A6NHQ2 334 aaKnown RBP9.7□□□□□ -0.86
SHMT2-228ENST00000557302 LYRM9A8MSI8 78 aa9.7□□□□□ -0.86
SHMT2-228ENST00000557302 PEX7O00628 323 aa9.7□□□□□ -0.86
SHMT2-228ENST00000557302 RGS13O14921 159 aa9.7□□□□□ -0.86
SHMT2-228ENST00000557302 PPT1P50897 306 aa9.7□□□□□ -0.86
SHMT2-228ENST00000557302 NKX2-5P52952 324 aaPredicted RBP9.7□□□□□ -0.86
SHMT2-228ENST00000557302 FLI1Q01543 452 aaPredicted RBP9.7□□□□□ -0.86
SHMT2-228ENST00000557302 CST9LP1Q5W188 147 aa9.7□□□□□ -0.86
SHMT2-228ENST00000557302 EIF4E3Q8N5X7 224 aaKnown RBP9.7□□□□□ -0.86
SHMT2-228ENST00000557302 TMEM75Q8N9X5 138 aa9.7□□□□□ -0.86
SHMT2-228ENST00000557302 HIST1H2BAQ96A08 127 aa9.7□□□□□ -0.86
SHMT2-228ENST00000557302 LINC00467Q9BRT7 94 aa9.7□□□□□ -0.86
SHMT2-228ENST00000557302 TREM1Q9NP99 234 aa9.7□□□□□ -0.86
SHMT2-228ENST00000557302 PSG8Q9UQ74 426 aa9.7□□□□□ -0.86
SHMT2-228ENST00000557302 IGHV1OR15-1A0A075B7D0 117 aa9.69□□□□□ -0.86
SHMT2-228ENST00000557302 CBY3A6NI87 242 aa9.69□□□□□ -0.86
SHMT2-228ENST00000557302 TEX46H3BTG2 121 aa9.69□□□□□ -0.86
SHMT2-228ENST00000557302 PAGE4O60829 102 aa9.69□□□□□ -0.86
SHMT2-228ENST00000557302 DAD1P61803 113 aa9.69□□□□□ -0.86
SHMT2-228ENST00000557302 PLECQ15149 4684 aaKnown RBP9.69□□□□□ -0.86
SHMT2-228ENST00000557302 Q6AWC8 147 aa9.69□□□□□ -0.86
SHMT2-228ENST00000557302 ZNF680Q8NEM1 530 aa9.69□□□□□ -0.86
SHMT2-228ENST00000557302 C2CD4CQ8TF44 421 aa9.69□□□□□ -0.86
SHMT2-228ENST00000557302 TVP23CQ96ET8 276 aa9.69□□□□□ -0.86
SHMT2-228ENST00000557302 TCEAL7Q9BRU2 100 aa9.69□□□□□ -0.86
SHMT2-228ENST00000557302 TIMM8BQ9Y5J9 83 aaPredicted RBP9.69□□□□□ -0.86
SHMT2-228ENST00000557302 SACSQ9NZJ4 4579 aa9.68□□□□□ -0.86
SHMT2-228ENST00000557302 DYNC2H1Q8NCM8 4307 aaKnown RBP9.68□□□□□ -0.86
SHMT2-228ENST00000557302 DEFB131BA0A096LNP1 70 aa9.68□□□□□ -0.86
SHMT2-228ENST00000557302 TRAV1-1A0A0B4J248 108 aa9.68□□□□□ -0.86
SHMT2-228ENST00000557302 SNURFLB1AK76 121 aa9.68□□□□□ -0.86
SHMT2-228ENST00000557302 F6UZH7 168 aa9.68□□□□□ -0.86
SHMT2-228ENST00000557302 IGLV2-11P01706 119 aa9.68□□□□□ -0.86
SHMT2-228ENST00000557302 ATP5G3P48201 142 aa9.68□□□□□ -0.86
SHMT2-228ENST00000557302 ANXA2RQ3ZCQ2 193 aa9.68□□□□□ -0.86
SHMT2-228ENST00000557302 Q6ZQT7 251 aa9.68□□□□□ -0.86
SHMT2-228ENST00000557302 PRNTQ86SH4 94 aa9.68□□□□□ -0.86
SHMT2-228ENST00000557302 NOP10Q9NPE3 64 aaKnown RBP9.68□□□□□ -0.86
SHMT2-228ENST00000557302 TRAV34A0A0B4J273 112 aa9.67□□□□□ -0.86
SHMT2-228ENST00000557302 DEFB130BP0DP73 79 aa9.67□□□□□ -0.86
SHMT2-228ENST00000557302 DEFB130AP0DP74 79 aa9.67□□□□□ -0.86
SHMT2-228ENST00000557302 MUC21Q5SSG8 566 aa9.67□□□□□ -0.86
SHMT2-228ENST00000557302 SAPCD1Q5SSQ6 148 aa9.67□□□□□ -0.86
SHMT2-228ENST00000557302 LINC00479Q96M42 142 aa9.67□□□□□ -0.86
SHMT2-228ENST00000557302 TRAV21A0A0B4J279 112 aa9.66□□□□□ -0.86
SHMT2-228ENST00000557302 CCL20P78556 96 aa9.66□□□□□ -0.86
SHMT2-228ENST00000557302 SMUG1Q53HV7 270 aa9.66□□□□□ -0.86
SHMT2-228ENST00000557302 FAM159AQ6UWV7 190 aa9.66□□□□□ -0.86
SHMT2-228ENST00000557302 ALKAL2Q6UX46 152 aa9.66□□□□□ -0.86
SHMT2-228ENST00000557302 C8orf49Q96NF6 230 aa9.66□□□□□ -0.86
SHMT2-228ENST00000557302 MANBALQ9NQG1 85 aa9.66□□□□□ -0.86
SHMT2-228ENST00000557302 NAGKQ9UJ70 344 aa9.66□□□□□ -0.86
SHMT2-228ENST00000557302 IGLL5B9A064 214 aa9.65□□□□□ -0.86
SHMT2-228ENST00000557302 GCGP01275 180 aa9.65□□□□□ -0.86
SHMT2-228ENST00000557302 HTN3P15516 51 aa9.65□□□□□ -0.86
SHMT2-228ENST00000557302 AKR1C3P42330 323 aa9.65□□□□□ -0.86
SHMT2-228ENST00000557302 UBE2G1P62253 170 aa9.65□□□□□ -0.86
SHMT2-228ENST00000557302 DAZ2Q13117 558 aaKnown RBP9.65□□□□□ -0.86
SHMT2-228ENST00000557302 IBA57Q5T440 356 aaKnown RBP9.65□□□□□ -0.86
SHMT2-228ENST00000557302 Q86TA4 180 aa9.65□□□□□ -0.86
SHMT2-228ENST00000557302 C11orf72Q8NBR9 251 aa9.65□□□□□ -0.86
SHMT2-228ENST00000557302 FMC1Q96HJ9 113 aa9.65□□□□□ -0.86
SHMT2-228ENST00000557302 GSN-AS1Q9NRJ2 163 aa9.65□□□□□ -0.86
SHMT2-228ENST00000557302 GNG13Q9P2W3 67 aa9.65□□□□□ -0.86
SHMT2-228ENST00000557302 TP53TG3Q9ULZ0 132 aa9.65□□□□□ -0.86
SHMT2-228ENST00000557302 TRGV11A0A075B6L2 103 aa9.64□□□□□ -0.87
SHMT2-228ENST00000557302 LCE6AA0A183 80 aa9.64□□□□□ -0.87
SHMT2-228ENST00000557302 TCL1AP56279 114 aa9.64□□□□□ -0.87
SHMT2-228ENST00000557302 TCTAP57738 103 aa9.64□□□□□ -0.87
SHMT2-228ENST00000557302 ZNF415Q09FC8 603 aa9.64□□□□□ -0.87
SHMT2-228ENST00000557302 TDRG1Q3Y452 100 aa9.64□□□□□ -0.87
SHMT2-228ENST00000557302 LYSTQ99698 3801 aa9.64□□□□□ -0.87
SHMT2-228ENST00000557302 KLF12Q9Y4X4 402 aa9.64□□□□□ -0.87
SHMT2-228ENST00000557302 SCO2A0A1W2PP80 73 aa9.63□□□□□ -0.87
SHMT2-228ENST00000557302 IFNA1P01562 189 aa9.63□□□□□ -0.87
SHMT2-228ENST00000557302 PFN1P07737 140 aaKnown RBP9.63□□□□□ -0.87
SHMT2-228ENST00000557302 ZNF80P51504 273 aaPredicted RBP9.63□□□□□ -0.87
SHMT2-228ENST00000557302 TMEM183BQ1AE95 376 aa9.63□□□□□ -0.87
SHMT2-228ENST00000557302 TMEM183AQ8IXX5 376 aa9.63□□□□□ -0.87
SHMT2-228ENST00000557302 LINC00612Q8N6U2 182 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms