RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 TMEM75Q8N9X5 138 aa10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 NDUFAF3Q9BU61 184 aa10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 STARD9Q9P2P6 4700 aa10.25□□□□□ -0.77
CCDC88C-207ENST00000554051 IGHV4-4A0A075B6R2 117 aa10.24□□□□□ -0.77
CCDC88C-207ENST00000554051 ZNF324O75467 553 aaPredicted RBP10.24□□□□□ -0.77
CCDC88C-207ENST00000554051 CD300CQ08708 224 aa10.24□□□□□ -0.77
CCDC88C-207ENST00000554051 DAZ2Q13117 558 aaKnown RBP10.24□□□□□ -0.77
CCDC88C-207ENST00000554051 LGALSLQ3ZCW2 172 aaPredicted RBP10.24□□□□□ -0.77
CCDC88C-207ENST00000554051 LGALS9CQ6DKI2 356 aa10.24□□□□□ -0.77
CCDC88C-207ENST00000554051 SSX7Q7RTT5 188 aa10.24□□□□□ -0.77
CCDC88C-207ENST00000554051 HIST1H2BAQ96A08 127 aa10.24□□□□□ -0.77
CCDC88C-207ENST00000554051 EPDR1Q9UM22 224 aa10.24□□□□□ -0.77
CCDC88C-207ENST00000554051 CSMD3Q7Z407 3707 aa10.23□□□□□ -0.77
CCDC88C-207ENST00000554051 IGHV1OR15-1A0A075B7D0 117 aa10.23□□□□□ -0.77
CCDC88C-207ENST00000554051 TRAV21A0A0B4J279 112 aa10.23□□□□□ -0.77
CCDC88C-207ENST00000554051 F6UZH7 168 aa10.23□□□□□ -0.77
CCDC88C-207ENST00000554051 TEX46H3BTG2 121 aa10.23□□□□□ -0.77
CCDC88C-207ENST00000554051 ATP5G1P05496 136 aa10.23□□□□□ -0.77
CCDC88C-207ENST00000554051 AZU1P20160 251 aa10.23□□□□□ -0.77
CCDC88C-207ENST00000554051 ATP5G3P48201 142 aa10.23□□□□□ -0.77
CCDC88C-207ENST00000554051 FHITP49789 147 aa10.23□□□□□ -0.77
CCDC88C-207ENST00000554051 SUMO1P63165 101 aaKnown RBP10.23□□□□□ -0.77
CCDC88C-207ENST00000554051 GNG5P63218 68 aa10.23□□□□□ -0.77
CCDC88C-207ENST00000554051 SAPCD1Q5SSQ6 148 aa10.23□□□□□ -0.77
CCDC88C-207ENST00000554051 ZNF767PQ75MW2 155 aa10.23□□□□□ -0.77
CCDC88C-207ENST00000554051 FAM213BQ8TBF2 198 aa10.23□□□□□ -0.77
CCDC88C-207ENST00000554051 TRGV11A0A075B6L2 103 aa10.22□□□□□ -0.77
CCDC88C-207ENST00000554051 IFNA7P01567 189 aa10.22□□□□□ -0.77
CCDC88C-207ENST00000554051 DEFB130BP0DP73 79 aa10.22□□□□□ -0.77
CCDC88C-207ENST00000554051 DEFB130AP0DP74 79 aa10.22□□□□□ -0.77
CCDC88C-207ENST00000554051 ZNF415Q09FC8 603 aa10.22□□□□□ -0.77
CCDC88C-207ENST00000554051 SLC51BQ86UW2 128 aa10.22□□□□□ -0.77
CCDC88C-207ENST00000554051 LINC00612Q8N6U2 182 aa10.22□□□□□ -0.77
CCDC88C-207ENST00000554051 TREM1Q9NP99 234 aa10.22□□□□□ -0.77
CCDC88C-207ENST00000554051 NOP10Q9NPE3 64 aaKnown RBP10.22□□□□□ -0.77
CCDC88C-207ENST00000554051 KMT2CQ8NEZ4 4911 aaKnown RBP10.22□□□□□ -0.77
CCDC88C-207ENST00000554051 FAM74A7A6NL05 159 aa10.21□□□□□ -0.77
CCDC88C-207ENST00000554051 LY6G6CO95867 125 aa10.21□□□□□ -0.77
CCDC88C-207ENST00000554051 FGF8P55075 233 aaPredicted RBP10.21□□□□□ -0.77
CCDC88C-207ENST00000554051 TCL1AP56279 114 aa10.21□□□□□ -0.77
CCDC88C-207ENST00000554051 TDRG1Q3Y452 100 aa10.21□□□□□ -0.77
CCDC88C-207ENST00000554051 PRR9Q5T870 116 aa10.21□□□□□ -0.77
CCDC88C-207ENST00000554051 FAM159AQ6UWV7 190 aa10.21□□□□□ -0.77
CCDC88C-207ENST00000554051 C15orf53Q8NAA6 179 aa10.21□□□□□ -0.77
CCDC88C-207ENST00000554051 C11orf72Q8NBR9 251 aa10.21□□□□□ -0.77
CCDC88C-207ENST00000554051 MBD3L1Q8WWY6 194 aa10.21□□□□□ -0.77
CCDC88C-207ENST00000554051 KCNS1Q96KK3 526 aa10.21□□□□□ -0.77
CCDC88C-207ENST00000554051 C18orf15Q96N68 181 aa10.21□□□□□ -0.77
CCDC88C-207ENST00000554051 APLNQ9ULZ1 77 aa10.21□□□□□ -0.77
CCDC88C-207ENST00000554051 hCG_2014768A0A024R1R8 64 aa10.2□□□□□ -0.78
CCDC88C-207ENST00000554051 PEX7O00628 323 aa10.2□□□□□ -0.78
CCDC88C-207ENST00000554051 H2AFB1P0C5Y9 115 aa10.2□□□□□ -0.78
CCDC88C-207ENST00000554051 FLI1Q01543 452 aaPredicted RBP10.2□□□□□ -0.78
CCDC88C-207ENST00000554051 SFT2D1Q8WV19 159 aa10.2□□□□□ -0.78
CCDC88C-207ENST00000554051 PSG8Q9UQ74 426 aa10.2□□□□□ -0.78
CCDC88C-207ENST00000554051 DYNC2H1Q8NCM8 4307 aaKnown RBP10.19□□□□□ -0.78
CCDC88C-207ENST00000554051 TRAV8-1A0A0A6YYK1 113 aa10.19□□□□□ -0.78
CCDC88C-207ENST00000554051 P0DMU3 169 aa10.19□□□□□ -0.78
CCDC88C-207ENST00000554051 FAM231AP0DMU4 169 aa10.19□□□□□ -0.78
CCDC88C-207ENST00000554051 FAM231CP0DMU5 169 aa10.19□□□□□ -0.78
CCDC88C-207ENST00000554051 HTN3P15516 51 aa10.19□□□□□ -0.78
CCDC88C-207ENST00000554051 UBE2G2P60604 165 aa10.19□□□□□ -0.78
CCDC88C-207ENST00000554051 LGALS9BQ3B8N2 356 aa10.19□□□□□ -0.78
CCDC88C-207ENST00000554051 SMUG1Q53HV7 270 aa10.19□□□□□ -0.78
CCDC88C-207ENST00000554051 TMPRSS5Q9H3S3 457 aa10.19□□□□□ -0.78
CCDC88C-207ENST00000554051 PRM2P04554 102 aa10.18□□□□□ -0.78
CCDC88C-207ENST00000554051 PFN1P07737 140 aaKnown RBP10.18□□□□□ -0.78
CCDC88C-207ENST00000554051 Q86TA4 180 aa10.18□□□□□ -0.78
CCDC88C-207ENST00000554051 FMC1Q96HJ9 113 aa10.18□□□□□ -0.78
CCDC88C-207ENST00000554051 SDF2L1Q9HCN8 221 aa10.18□□□□□ -0.78
CCDC88C-207ENST00000554051 MANBALQ9NQG1 85 aa10.18□□□□□ -0.78
CCDC88C-207ENST00000554051 GSN-AS1Q9NRJ2 163 aa10.18□□□□□ -0.78
CCDC88C-207ENST00000554051 TP53TG3Q9ULZ0 132 aa10.18□□□□□ -0.78
CCDC88C-207ENST00000554051 TRGV2A0A075B6R0 118 aa10.17□□□□□ -0.78
CCDC88C-207ENST00000554051 TRAV1-1A0A0B4J248 108 aa10.17□□□□□ -0.78
CCDC88C-207ENST00000554051 F5H768 121 aa10.17□□□□□ -0.78
CCDC88C-207ENST00000554051 IGLV2-11P01706 119 aa10.17□□□□□ -0.78
CCDC88C-207ENST00000554051 S100A9P06702 114 aaKnown RBP10.17□□□□□ -0.78
CCDC88C-207ENST00000554051 UBE2G1P62253 170 aa10.17□□□□□ -0.78
CCDC88C-207ENST00000554051 CST9LP1Q5W188 147 aa10.17□□□□□ -0.78
CCDC88C-207ENST00000554051 TXNDC17Q9BRA2 123 aa10.17□□□□□ -0.78
CCDC88C-207ENST00000554051 SPXQ9BT56 116 aa10.17□□□□□ -0.78
CCDC88C-207ENST00000554051 ZFP30Q9Y2G7 519 aa10.17□□□□□ -0.78
CCDC88C-207ENST00000554051 KLF12Q9Y4X4 402 aa10.17□□□□□ -0.78
CCDC88C-207ENST00000554051 ALMS1Q8TCU4 4167 aa10.17□□□□□ -0.78
CCDC88C-207ENST00000554051 TENM2Q9NT68 2774 aa10.16□□□□□ -0.78
CCDC88C-207ENST00000554051 TRGV1A0A0A0MS02 117 aa10.16□□□□□ -0.78
CCDC88C-207ENST00000554051 TRBV6-1A0A0K0K1D8 114 aa10.16□□□□□ -0.78
CCDC88C-207ENST00000554051 SPINK4O60575 86 aa10.16□□□□□ -0.78
CCDC88C-207ENST00000554051 IFNA1P01562 189 aa10.16□□□□□ -0.78
CCDC88C-207ENST00000554051 AKR1C3P42330 323 aa10.16□□□□□ -0.78
CCDC88C-207ENST00000554051 SULT1A2P50226 295 aa10.16□□□□□ -0.78
CCDC88C-207ENST00000554051 TMEM88Q6PEY1 159 aa10.16□□□□□ -0.78
CCDC88C-207ENST00000554051 PRNTQ86SH4 94 aa10.16□□□□□ -0.78
CCDC88C-207ENST00000554051 C9orf62Q8N4C0 152 aa10.16□□□□□ -0.78
CCDC88C-207ENST00000554051 NAGKQ9UJ70 344 aa10.16□□□□□ -0.78
CCDC88C-207ENST00000554051 GAGE12BA1L429 117 aa10.15□□□□□ -0.78
CCDC88C-207ENST00000554051 H3BNG1 76 aa10.15□□□□□ -0.78
CCDC88C-207ENST00000554051 GAGE7O76087 117 aa10.15□□□□□ -0.78
CCDC88C-207ENST00000554051 GCGP01275 180 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms