RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 HIST3H2BBQ8N257 126 aa9.69□□□□□ -0.86
VIPAS39-206ENST00000553888 NDUFAF3Q9BU61 184 aa9.69□□□□□ -0.86
VIPAS39-206ENST00000553888 SSBP4Q9BWG4 385 aaPredicted RBP9.69□□□□□ -0.86
VIPAS39-206ENST00000553888 RHPN1-AS1Q9BWJ2 59 aa9.69□□□□□ -0.86
VIPAS39-206ENST00000553888 ZFP30Q9Y2G7 519 aa9.69□□□□□ -0.86
VIPAS39-206ENST00000553888 TRAV9-1A0A075B6T8 112 aa9.69□□□□□ -0.86
VIPAS39-206ENST00000553888 IGHV4OR15-8A0A075B7B6 117 aa9.69□□□□□ -0.86
VIPAS39-206ENST00000553888 A0A087WW49 117 aa9.69□□□□□ -0.86
VIPAS39-206ENST00000553888 TRBV6-1A0A0K0K1D8 114 aa9.69□□□□□ -0.86
VIPAS39-206ENST00000553888 CAMPP49913 170 aa9.69□□□□□ -0.86
VIPAS39-206ENST00000553888 C16orf92Q96LL3 132 aa9.69□□□□□ -0.86
VIPAS39-206ENST00000553888 DUX3Q96PT4 197 aa9.69□□□□□ -0.86
VIPAS39-206ENST00000553888 PRR25Q96S07 402 aa9.69□□□□□ -0.86
VIPAS39-206ENST00000553888 NAT8BQ9UHF3 227 aa9.69□□□□□ -0.86
VIPAS39-206ENST00000553888 F2Z2F3 143 aa9.68□□□□□ -0.86
VIPAS39-206ENST00000553888 M0QXV9 152 aa9.68□□□□□ -0.86
VIPAS39-206ENST00000553888 CDX1P47902 265 aaPredicted RBP9.68□□□□□ -0.86
VIPAS39-206ENST00000553888 IGHV7-4-1A0A0J9YVY3 117 aa9.68□□□□□ -0.86
VIPAS39-206ENST00000553888 A0A1B0GV72 72 aa9.68□□□□□ -0.86
VIPAS39-206ENST00000553888 CD5LO43866 347 aa9.68□□□□□ -0.86
VIPAS39-206ENST00000553888 Q6ZQT7 251 aa9.68□□□□□ -0.86
VIPAS39-206ENST00000553888 DAZ1Q9NQZ3 744 aaKnown RBP9.68□□□□□ -0.86
VIPAS39-206ENST00000553888 NPIPB6E9PJ23 425 aa9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 K7EP13 123 aa9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 NUPR1O60356 82 aa9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 TMEM256Q8N2U0 113 aa9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 C11orf44Q8N8P7 122 aa9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 SLC50A1Q9BRV3 221 aa9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 LOC102724200A0A096LPH7 203 aaPredicted RBP9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 SH2D1AO60880 128 aa9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 SYNJ2BPP57105 145 aa9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 FOXE3Q13461 319 aa9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 TCTEX1D4Q5JR98 221 aa9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 Q6ZSV7 163 aa9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 KLHDC1Q8N7A1 406 aa9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 ALKBH7Q9BT30 221 aaPredicted RBP9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 AGPAT4-IT1Q9H0P7 198 aa9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 AGRNO00468 2067 aa9.67□□□□□ -0.86
VIPAS39-206ENST00000553888 MUC21A0A0G2JKD1 596 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 MUC21A0A140T8X8 626 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 FABP4P15090 132 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 MUC21Q5SSG8 566 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 A8MWL6 223 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 F6UB75 175 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 KHDC1LQ5JSQ8 128 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 WFDC3Q8IUB2 231 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 Q8N2B8 174 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 MYOZ3Q8TDC0 251 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 GNB1LQ9BYB4 327 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 TMEM213A2RRL7 107 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 SOCS3O14543 225 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 LGALS1P09382 135 aaKnown RBP9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 FAM106AQ4KMX7 169 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 SMPXQ9UHP9 88 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 TP53TG3Q9ULZ0 132 aa9.66□□□□□ -0.86
VIPAS39-206ENST00000553888 HIVEP2P31629 2446 aa9.65□□□□□ -0.86
VIPAS39-206ENST00000553888 A8MWP6 167 aa9.65□□□□□ -0.86
VIPAS39-206ENST00000553888 ELANEP08246 267 aa9.65□□□□□ -0.86
VIPAS39-206ENST00000553888 CT45A10P0DMU9 189 aa9.65□□□□□ -0.86
VIPAS39-206ENST00000553888 ZNF738Q8NE65 137 aa9.65□□□□□ -0.86
VIPAS39-206ENST00000553888 TRAV25A0A0B4J276 109 aa9.65□□□□□ -0.87
VIPAS39-206ENST00000553888 TRBV7-9A0A0J9YWB2 115 aa9.65□□□□□ -0.87
VIPAS39-206ENST00000553888 HOXD3P31249 432 aaPredicted RBP9.65□□□□□ -0.87
VIPAS39-206ENST00000553888 TFPI2P48307 235 aa9.65□□□□□ -0.87
VIPAS39-206ENST00000553888 SLURP1P55000 103 aa9.65□□□□□ -0.87
VIPAS39-206ENST00000553888 OR10D4PQ8NGN7 298 aa9.65□□□□□ -0.87
VIPAS39-206ENST00000553888 RIPPLY3P57055 190 aa9.64□□□□□ -0.87
VIPAS39-206ENST00000553888 FAM110AQ9BQ89 295 aa9.64□□□□□ -0.87
VIPAS39-206ENST00000553888 TMEM89A2RUT3 159 aa9.64□□□□□ -0.87
VIPAS39-206ENST00000553888 M0R143 59 aa9.64□□□□□ -0.87
VIPAS39-206ENST00000553888 CT83Q5H943 113 aa9.64□□□□□ -0.87
VIPAS39-206ENST00000553888 UBE2E2Q96LR5 201 aa9.64□□□□□ -0.87
VIPAS39-206ENST00000553888 HIST1H2BLQ99880 126 aa9.64□□□□□ -0.87
VIPAS39-206ENST00000553888 NRN1Q9NPD7 142 aa9.64□□□□□ -0.87
VIPAS39-206ENST00000553888 A0A1B0GXF2 115 aa9.63□□□□□ -0.87
VIPAS39-206ENST00000553888 A0A1W2PS18 150 aa9.63□□□□□ -0.87
VIPAS39-206ENST00000553888 ARMS2P0C7Q2 107 aa9.63□□□□□ -0.87
VIPAS39-206ENST00000553888 LINC00310P59036 64 aa9.63□□□□□ -0.87
VIPAS39-206ENST00000553888 FAM162BQ5T6X4 162 aa9.63□□□□□ -0.87
VIPAS39-206ENST00000553888 RBPMS2Q6ZRY4 209 aaKnown RBP9.63□□□□□ -0.87
VIPAS39-206ENST00000553888 ZNF575Q86XF7 245 aa9.63□□□□□ -0.87
VIPAS39-206ENST00000553888 SETXQ7Z333 2677 aaKnown RBP9.63□□□□□ -0.87
VIPAS39-206ENST00000553888 SRSF2Q01130 221 aaKnown RBP9.63□□□□□ -0.87
VIPAS39-206ENST00000553888 C20orf202A1L168 122 aa9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 APCSP02743 223 aa9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 AMBPP02760 352 aa9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 CRISP2P16562 243 aa9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 S100A2P29034 98 aa9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 SRIP30626 198 aa9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 PRR9Q5T870 116 aa9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 OR4B1Q8NGF8 309 aa9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 RNF152Q8N8N0 203 aa9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 NIPBLQ6KC79 2804 aaeCLIP9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 TMEM189A5PLL7 270 aa9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 IQCJQ1A5X6 159 aa9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 COA6Q5JTJ3 125 aaKnown RBP9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 TMEM78Q5T7P6 136 aa9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 WIPF2Q8TF74 440 aaPredicted RBP9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 C11orf21Q9P2W6 132 aa9.62□□□□□ -0.87
VIPAS39-206ENST00000553888 A0A1W2PRX2 142 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms