RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 RNF223E7ERA6 249 aa12.16□□□□□ -0.46
ARHGEF40-202ENST00000553709 NOTCH3Q9UM47 2321 aa12.16□□□□□ -0.46
ARHGEF40-202ENST00000553709 RHODO00212 210 aa12.16□□□□□ -0.46
ARHGEF40-202ENST00000553709 PRIMA1Q86XR5 153 aa12.16□□□□□ -0.46
ARHGEF40-202ENST00000553709 JPT2Q9H910 190 aa12.16□□□□□ -0.46
ARHGEF40-202ENST00000553709 TRAV26-2A0A0B4J265 109 aa12.15□□□□□ -0.46
ARHGEF40-202ENST00000553709 KNCNA6PVL3 124 aa12.15□□□□□ -0.46
ARHGEF40-202ENST00000553709 ANXA2RQ3ZCQ2 193 aa12.15□□□□□ -0.46
ARHGEF40-202ENST00000553709 C6orf226Q5I0X4 101 aa12.15□□□□□ -0.46
ARHGEF40-202ENST00000553709 CTSZQ9UBR2 303 aa12.15□□□□□ -0.46
ARHGEF40-202ENST00000553709 ZFAND6Q6FIF0 208 aa12.15□□□□□ -0.46
ARHGEF40-202ENST00000553709 NPYP01303 97 aa12.15□□□□□ -0.46
ARHGEF40-202ENST00000553709 VGLL1Q99990 258 aa12.15□□□□□ -0.46
ARHGEF40-202ENST00000553709 KLK9Q9UKQ9 250 aa12.15□□□□□ -0.46
ARHGEF40-202ENST00000553709 MALRD1Q5VYJ5 2156 aa12.15□□□□□ -0.47
ARHGEF40-202ENST00000553709 COX8AP10176 69 aa12.14□□□□□ -0.47
ARHGEF40-202ENST00000553709 ADAMTSL5Q6ZMM2 481 aa12.14□□□□□ -0.47
ARHGEF40-202ENST00000553709 CITED1Q99966 193 aa12.14□□□□□ -0.47
ARHGEF40-202ENST00000553709 GTF3C1Q12789 2109 aa12.14□□□□□ -0.47
ARHGEF40-202ENST00000553709 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.14□□□□□ -0.475e-7■■■□□ 15.8
ARHGEF40-202ENST00000553709 PMVKQ15126 192 aa12.14□□□□□ -0.47
ARHGEF40-202ENST00000553709 LEPROTO15243 131 aa12.14□□□□□ -0.47
ARHGEF40-202ENST00000553709 IGHV1OR15-1A0A075B7D0 117 aa12.14□□□□□ -0.47
ARHGEF40-202ENST00000553709 SDHAF1A6NFY7 115 aa12.14□□□□□ -0.47
ARHGEF40-202ENST00000553709 LHBP01229 141 aa12.14□□□□□ -0.47
ARHGEF40-202ENST00000553709 OCIAD2Q56VL3 154 aa12.14□□□□□ -0.47
ARHGEF40-202ENST00000553709 C22orf46C9J442 243 aa12.13□□□□□ -0.47
ARHGEF40-202ENST00000553709 NEGR1Q7Z3B1 354 aa12.13□□□□□ -0.47
ARHGEF40-202ENST00000553709 CST9LQ9H4G1 147 aa12.13□□□□□ -0.47
ARHGEF40-202ENST00000553709 I3L3M4 83 aa12.13□□□□□ -0.47
ARHGEF40-202ENST00000553709 PCDH15Q96QU1 1955 aa12.13□□□□□ -0.47
ARHGEF40-202ENST00000553709 SHISA9B4DS77 424 aa12.13□□□□□ -0.47
ARHGEF40-202ENST00000553709 XCL2Q9UBD3 114 aa12.13□□□□□ -0.47
ARHGEF40-202ENST00000553709 ARFGEF3Q5TH69 2177 aa12.13□□□□□ -0.47
ARHGEF40-202ENST00000553709 A0A1W2PNU3 283 aaPredicted RBP12.13□□□□□ -0.47
ARHGEF40-202ENST00000553709 LINC01619G3V211 115 aa12.13□□□□□ -0.47
ARHGEF40-202ENST00000553709 PLA2G2EQ9NZK7 142 aa12.13□□□□□ -0.47
ARHGEF40-202ENST00000553709 SPRNQ5BIV9 151 aa12.12□□□□□ -0.47
ARHGEF40-202ENST00000553709 WIPF2Q8TF74 440 aaPredicted RBP12.12□□□□□ -0.47
ARHGEF40-202ENST00000553709 C17orf77Q96MU5 243 aa12.12□□□□□ -0.47
ARHGEF40-202ENST00000553709 IGFL2Q6UWQ7 119 aa12.12□□□□□ -0.47
ARHGEF40-202ENST00000553709 RNF114Q9Y508 228 aa12.12□□□□□ -0.47
ARHGEF40-202ENST00000553709 WT1P19544 449 aaPredicted RBP12.12□□□□□ -0.47
ARHGEF40-202ENST00000553709 MAPK1IP1LQ8NDC0 245 aa12.12□□□□□ -0.47
ARHGEF40-202ENST00000553709 SMIM2Q9BVW6 85 aa12.12□□□□□ -0.47
ARHGEF40-202ENST00000553709 TRAV8-3A0A0A6YYJ7 113 aa12.11□□□□□ -0.47
ARHGEF40-202ENST00000553709 C9orf118A6NHY6 69 aa12.11□□□□□ -0.47
ARHGEF40-202ENST00000553709 CDKN1BP46527 198 aa12.11□□□□□ -0.47
ARHGEF40-202ENST00000553709 FAM120AOSQ5T036 256 aa12.11□□□□□ -0.47
ARHGEF40-202ENST00000553709 C9JAW5 83 aa12.11□□□□□ -0.47
ARHGEF40-202ENST00000553709 LGALS1P09382 135 aaKnown RBP12.11□□□□□ -0.47
ARHGEF40-202ENST00000553709 MED13LQ71F56 2210 aa12.11□□□□□ -0.47
ARHGEF40-202ENST00000553709 DEFB130BP0DP73 79 aa12.11□□□□□ -0.47
ARHGEF40-202ENST00000553709 DEFB130AP0DP74 79 aa12.11□□□□□ -0.47
ARHGEF40-202ENST00000553709 C1orf122Q6ZSJ8 110 aa12.11□□□□□ -0.47
ARHGEF40-202ENST00000553709 PYGO2Q9BRQ0 406 aa12.11□□□□□ -0.47
ARHGEF40-202ENST00000553709 MRPL35Q9NZE8 188 aaKnown RBP12.11□□□□□ -0.47
ARHGEF40-202ENST00000553709 CEP192Q8TEP8 1941 aa12.11□□□□□ -0.47
ARHGEF40-202ENST00000553709 OVOL2Q9BRP0 275 aa12.1□□□□□ -0.47
ARHGEF40-202ENST00000553709 C3orf56Q8N813 242 aa12.1□□□□□ -0.47
ARHGEF40-202ENST00000553709 TRAV12-2A0A075B6T6 113 aa12.1□□□□□ -0.47
ARHGEF40-202ENST00000553709 ZFHX2Q9C0A1 2572 aaPredicted RBP12.09□□□□□ -0.47
ARHGEF40-202ENST00000553709 TCTEX1D4Q5JR98 221 aa12.09□□□□□ -0.47
ARHGEF40-202ENST00000553709 SS18Q15532 418 aa12.09□□□□□ -0.47
ARHGEF40-202ENST00000553709 COA6Q5JTJ3 125 aaKnown RBP12.09□□□□□ -0.47
ARHGEF40-202ENST00000553709 IGHV7-4-1A0A0J9YVY3 117 aa12.09□□□□□ -0.47
ARHGEF40-202ENST00000553709 HLA-DRB4P13762 266 aa12.09□□□□□ -0.47
ARHGEF40-202ENST00000553709 KLF5Q13887 457 aaPredicted RBP12.09□□□□□ -0.47
ARHGEF40-202ENST00000553709 HLA-DRB4X5D2U9 266 aa12.09□□□□□ -0.47
ARHGEF40-202ENST00000553709 IGHV3-16A0A0C4DH30 117 aa12.08□□□□□ -0.48
ARHGEF40-202ENST00000553709 DEFB121Q5J5C9 76 aa12.08□□□□□ -0.48
ARHGEF40-202ENST00000553709 DKK4Q9UBT3 224 aa12.08□□□□□ -0.48
ARHGEF40-202ENST00000553709 F8VRH5 84 aa12.08□□□□□ -0.48
ARHGEF40-202ENST00000553709 ZNF625Q96I27 306 aaPredicted RBP12.08□□□□□ -0.48
ARHGEF40-202ENST00000553709 GAGE12JA6NER3 117 aa12.08□□□□□ -0.48
ARHGEF40-202ENST00000553709 SPINK8P0C7L1 97 aa12.08□□□□□ -0.48
ARHGEF40-202ENST00000553709 GAGE1Q13065 139 aa12.08□□□□□ -0.48
ARHGEF40-202ENST00000553709 GAGE4Q13068 117 aa12.08□□□□□ -0.48
ARHGEF40-202ENST00000553709 GAGE5Q13069 117 aa12.08□□□□□ -0.48
ARHGEF40-202ENST00000553709 HLA-DMBP28068 263 aa12.08□□□□□ -0.48
ARHGEF40-202ENST00000553709 HOXB4P17483 251 aaPredicted RBP12.07□□□□□ -0.48
ARHGEF40-202ENST00000553709 BVES-AS1Q5T3Y7 98 aa12.07□□□□□ -0.48
ARHGEF40-202ENST00000553709 DYNAPQ8N1N2 210 aa12.07□□□□□ -0.48
ARHGEF40-202ENST00000553709 C20orf78Q9BR46 151 aa12.07□□□□□ -0.48
ARHGEF40-202ENST00000553709 NDUFS7O75251 213 aa12.07□□□□□ -0.48
ARHGEF40-202ENST00000553709 OR11H6Q8NGC7 330 aa12.07□□□□□ -0.48
ARHGEF40-202ENST00000553709 J3QLI3 93 aa12.07□□□□□ -0.48
ARHGEF40-202ENST00000553709 EGR2P11161 476 aaPredicted RBP12.06□□□□□ -0.48
ARHGEF40-202ENST00000553709 LAMTOR3Q9UHA4 124 aa12.06□□□□□ -0.48
ARHGEF40-202ENST00000553709 Q96MF0 132 aa12.06□□□□□ -0.48
ARHGEF40-202ENST00000553709 TRBV20-1A0A075B6N2 111 aa12.06□□□□□ -0.48
ARHGEF40-202ENST00000553709 CDPF1Q6NVV7 123 aa12.06□□□□□ -0.48
ARHGEF40-202ENST00000553709 UBE2DNLQ8IWF7 75 aa12.06□□□□□ -0.48
ARHGEF40-202ENST00000553709 AGPAT4-IT1Q9H0P7 198 aa12.06□□□□□ -0.48
ARHGEF40-202ENST00000553709 H3BUA1 57 aa12.06□□□□□ -0.48
ARHGEF40-202ENST00000553709 ZNF747Q9BV97 191 aa12.06□□□□□ -0.48
ARHGEF40-202ENST00000553709 AZU1P20160 251 aa12.05□□□□□ -0.48
ARHGEF40-202ENST00000553709 KLF2Q9Y5W3 355 aaPredicted RBP12.05□□□□□ -0.48
ARHGEF40-202ENST00000553709 MED13Q9UHV7 2174 aa12.05□□□□□ -0.48
ARHGEF40-202ENST00000553709 GRNP28799 593 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms