RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 IGHV3-33P01772 117 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 IGHV3-30-3P0DP02 117 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 IGHV3-30-5P0DP03 117 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 ORM2P19652 201 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 SDC2P34741 201 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 RND3P61587 244 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 REG3GQ6UW15 175 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 UQCC3Q6UW78 93 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 C10orf67Q8IYJ2 551 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 Q8NBF4 154 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 OR1L4Q8NGR5 311 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 LHFPL5Q8TAF8 219 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 RBPMSQ93062 196 aaKnown RBP4.2□□□□□ -1.74
LIMA1-204ENST00000549064 RPUSD4Q96CM3 377 aaKnown RBP4.2□□□□□ -1.74
LIMA1-204ENST00000549064 SLC35E1Q96K37 410 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 MRPL16Q9NX20 251 aaKnown RBP4.2□□□□□ -1.74
LIMA1-204ENST00000549064 HHLA3Q9XRX5 114 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 FAT4Q6V0I7 4981 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 IGLV4-3A0A075B6K6 122 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 RBFOX3A6NFN3 312 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 H3BMQ9 156 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 GABARAPH6UMI1 98 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 SPINK4O60575 86 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 ATG12O94817 140 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 GABARAPO95166 117 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 FABP1P07148 127 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 SNRPCP09234 159 aaKnown RBP4.19□□□□□ -1.74
LIMA1-204ENST00000549064 SFTA3P0C7M3 94 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 CFC1BP0CG36 223 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 CFC1P0CG37 223 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 ACOT6Q3I5F7 207 aaPredicted RBP4.19□□□□□ -1.74
LIMA1-204ENST00000549064 LINC01556Q5JQF7 62 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 Q6ZRU5 148 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 BLNKQ8WV28 456 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 BAALCQ8WXS3 180 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 TRGV9Q99603 122 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 C8orf4Q9NR00 106 aa4.19□□□□□ -1.74
LIMA1-204ENST00000549064 IGLV7-46A0A075B6I9 117 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 TRGV4A0A0C4DH28 118 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 LOC100131303A0A0U1RQF7 123 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 RPL37AP8A6NKH3 93 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 H3BRN7 92 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 RCVRNP35243 200 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 TCL1AP56279 114 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 ASAH1Q13510 395 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 LAGE3Q14657 143 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 LGI3Q8N145 548 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 ZNF680Q8NEM1 530 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 LRRC20Q8TCA0 184 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 ZNF431Q8TF32 576 aaPredicted RBP4.18□□□□□ -1.74
LIMA1-204ENST00000549064 GPR82Q96P67 336 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 VGLL1Q99990 258 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 PYGO2Q9BRQ0 406 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 TMEM147Q9BVK8 224 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 MRPL32Q9BYC8 188 aaKnown RBP4.18□□□□□ -1.74
LIMA1-204ENST00000549064 TP53TG3Q9ULZ0 132 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 TMEM56-RWDD3S4R434 201 aa4.18□□□□□ -1.74
LIMA1-204ENST00000549064 KRTAP4-8A0A0G2JLE6 195 aa4.17□□□□□ -1.74
LIMA1-204ENST00000549064 CDS2O95674 445 aa4.17□□□□□ -1.74
LIMA1-204ENST00000549064 CT45A10P0DMU9 189 aa4.17□□□□□ -1.74
LIMA1-204ENST00000549064 PRSS3P35030 304 aa4.17□□□□□ -1.74
LIMA1-204ENST00000549064 GPX4P36969 197 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-204ENST00000549064 SLAQ13239 276 aa4.17□□□□□ -1.74
LIMA1-204ENST00000549064 SELENOHQ8IZQ5 122 aaKnown RBP4.17□□□□□ -1.74
LIMA1-204ENST00000549064 DTD1Q8TEA8 209 aa4.17□□□□□ -1.74
LIMA1-204ENST00000549064 GPX8Q8TED1 209 aa4.17□□□□□ -1.74
LIMA1-204ENST00000549064 S100A16Q96FQ6 103 aaKnown RBP4.17□□□□□ -1.74
LIMA1-204ENST00000549064 SHANK2-AS3Q9BTD1 123 aa4.17□□□□□ -1.74
LIMA1-204ENST00000549064 RBKSQ9H477 322 aa4.17□□□□□ -1.74
LIMA1-204ENST00000549064 COPZ2Q9P299 210 aa4.17□□□□□ -1.74
LIMA1-204ENST00000549064 RNF24Q9Y225 148 aa4.17□□□□□ -1.74
LIMA1-204ENST00000549064 U3KQ87 197 aa4.17□□□□□ -1.74
LIMA1-204ENST00000549064 RPL7P18124 248 aaKnown RBP4.16□□□□□ -1.74
LIMA1-204ENST00000549064 CD300CQ08708 224 aa4.16□□□□□ -1.74
LIMA1-204ENST00000549064 BTN1A1Q13410 526 aa4.16□□□□□ -1.74
LIMA1-204ENST00000549064 CNPY1Q3B7I2 92 aa4.16□□□□□ -1.74
LIMA1-204ENST00000549064 Q6ZQT7 251 aa4.16□□□□□ -1.74
LIMA1-204ENST00000549064 LHFPL1Q86WI0 220 aa4.16□□□□□ -1.74
LIMA1-204ENST00000549064 EIF4E3Q8N5X7 224 aaKnown RBP4.16□□□□□ -1.74
LIMA1-204ENST00000549064 BPIFCQ8NFQ6 507 aa4.16□□□□□ -1.74
LIMA1-204ENST00000549064 OR13C8Q8NGS7 320 aa4.16□□□□□ -1.74
LIMA1-204ENST00000549064 GLYATL2Q8WU03 294 aa4.16□□□□□ -1.74
LIMA1-204ENST00000549064 TXNDC17Q9BRA2 123 aa4.16□□□□□ -1.74
LIMA1-204ENST00000549064 CHCHD5Q9BSY4 110 aa4.16□□□□□ -1.74
LIMA1-204ENST00000549064 TMEM222Q9H0R3 208 aa4.16□□□□□ -1.74
LIMA1-204ENST00000549064 PAIP2BQ9ULR5 123 aaKnown RBP4.16□□□□□ -1.74
LIMA1-204ENST00000549064 C7orf71A4D174 169 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 SLC17A3O00476 420 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 CFDP00746 253 aaPredicted RBP4.15□□□□□ -1.75
LIMA1-204ENST00000549064 ORM1P02763 201 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 SULT1A3P0DMM9 295 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 SULT1A4P0DMN0 295 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 LEPP41159 167 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 ZNF846Q147U1 533 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 TDRG1Q3Y452 100 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 OR10J3Q5JRS4 329 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 UBE2NLQ5JXB2 153 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 SNX29P2Q8IUI4 249 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 CCDC71LQ8N9Z2 235 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 PAXXQ9BUH6 204 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms