RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 NUDT11Q96G61 164 aa6.33□□□□□ -1.4
CHD4-208ENST00000540960 LINC00477Q96M19 166 aa6.33□□□□□ -1.4
CHD4-208ENST00000540960 KLK15Q9H2R5 256 aa6.33□□□□□ -1.4
CHD4-208ENST00000540960 TRAV2A0A0B4J234 112 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 C19orf71A6NCJ1 209 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 PGPEP1LA6NFU8 196 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 FABP5P3A8MUU1 101 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 NPIPB6E9PJ23 425 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 IGHV3-11P01762 117 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 TRGC2P03986 189 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 S100A2P29034 98 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 ZNF138P52744 262 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 FOXA3P55318 350 aaPredicted RBP6.32□□□□□ -1.4
CHD4-208ENST00000540960 SNRPD3P62318 126 aaKnown RBP6.32□□□□□ -1.4
CHD4-208ENST00000540960 RPL11P62913 178 aaKnown RBP6.32□□□□□ -1.4
CHD4-208ENST00000540960 HIST1H1AQ02539 215 aaPredicted RBP6.32□□□□□ -1.4
CHD4-208ENST00000540960 ACTL10Q5JWF8 245 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 PRR27Q6MZM9 219 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 C9orf47Q6ZRZ4 202 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 C8orf86Q6ZUL3 223 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 C4orf3Q8WVX3 66 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 LINC00479Q96M42 142 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 RHPN1-AS1Q9BWJ2 59 aa6.32□□□□□ -1.4
CHD4-208ENST00000540960 RNASE7Q9H1E1 156 aaKnown RBP6.32□□□□□ -1.4
CHD4-208ENST00000540960 IGHV3-35A0A0C4DH35 117 aa6.31□□□□□ -1.4
CHD4-208ENST00000540960 C5orf52A6NGY3 159 aa6.31□□□□□ -1.4
CHD4-208ENST00000540960 F2Z2F3 143 aa6.31□□□□□ -1.4
CHD4-208ENST00000540960 H3BTX0 84 aa6.31□□□□□ -1.4
CHD4-208ENST00000540960 SLC17A3O00476 420 aa6.31□□□□□ -1.4
CHD4-208ENST00000540960 UBE2CO00762 179 aa6.31□□□□□ -1.4
CHD4-208ENST00000540960 IGLV2-11P01706 119 aa6.31□□□□□ -1.4
CHD4-208ENST00000540960 PF4P02776 101 aa6.31□□□□□ -1.4
CHD4-208ENST00000540960 MED14OSP0DP75 135 aa6.31□□□□□ -1.4
CHD4-208ENST00000540960 CMC4P56277 68 aaPredicted RBP6.31□□□□□ -1.4
CHD4-208ENST00000540960 COA6Q5JTJ3 125 aaKnown RBP6.31□□□□□ -1.4
CHD4-208ENST00000540960 OR2D3Q8NGH3 330 aa6.31□□□□□ -1.4
CHD4-208ENST00000540960 LINC00476Q8WZB0 136 aa6.31□□□□□ -1.4
CHD4-208ENST00000540960 FRZBQ92765 325 aa6.31□□□□□ -1.4
CHD4-208ENST00000540960 SMAD5-AS1Q9Y6J3 95 aa6.31□□□□□ -1.4
CHD4-208ENST00000540960 TMEM189A5PLL7 270 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 LINC01619G3V211 115 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 HIST1H2BKO60814 126 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 LY6G6CO95867 125 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 HIST1H2BJP06899 126 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 HOXA5P20719 270 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 HIST1H2BOP23527 126 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 HIST1H2BBP33778 126 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 NDUFA6P56556 154 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 HIST1H2BDP58876 126 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 HIST1H2BCP62807 126 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 HBBP68871 147 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 FABP9Q0Z7S8 132 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 HIST2H2BEQ16778 126 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.3□□□□□ -1.4
CHD4-208ENST00000540960 TCF24Q7RTU0 167 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 ZNF738Q8NE65 137 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 HIST1H2BHQ93079 126 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 C17orf77Q96MU5 243 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 HIST1H2BNQ99877 126 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 HIST1H2BMQ99879 126 aa6.3□□□□□ -1.4
CHD4-208ENST00000540960 A0A1B0GUT8 65 aa6.29□□□□□ -1.4
CHD4-208ENST00000540960 HIGD1CA8MV81 97 aa6.29□□□□□ -1.4
CHD4-208ENST00000540960 M0R3E3 92 aa6.29□□□□□ -1.4
CHD4-208ENST00000540960 DUSP14O95147 198 aaKnown RBP6.29□□□□□ -1.4
CHD4-208ENST00000540960 APCSP02743 223 aa6.29□□□□□ -1.4
CHD4-208ENST00000540960 RPLP1P05386 114 aaKnown RBP6.29□□□□□ -1.4
CHD4-208ENST00000540960 SNRPCP09234 159 aaKnown RBP6.29□□□□□ -1.4
CHD4-208ENST00000540960 TRGC1P0CF51 173 aa6.29□□□□□ -1.4
CHD4-208ENST00000540960 TSPOP30536 169 aa6.29□□□□□ -1.4
CHD4-208ENST00000540960 RAB4BP61018 213 aa6.29□□□□□ -1.4
CHD4-208ENST00000540960 SNRPEP62304 92 aaKnown RBP6.29□□□□□ -1.4
CHD4-208ENST00000540960 Q6ZS46 218 aa6.29□□□□□ -1.4
CHD4-208ENST00000540960 ZFP82Q8N141 532 aa6.29□□□□□ -1.4
CHD4-208ENST00000540960 LINC00482Q8N8I6 264 aa6.29□□□□□ -1.4
CHD4-208ENST00000540960 NHLRC2Q8NBF2 726 aa6.29□□□□□ -1.4
CHD4-208ENST00000540960 OR1N2Q8NGR9 330 aa6.29□□□□□ -1.4
CHD4-208ENST00000540960 ODF3Q96PU9 254 aa6.29□□□□□ -1.4
CHD4-208ENST00000540960 NEU1Q99519 415 aa6.29□□□□□ -1.4
CHD4-208ENST00000540960 MRPL18Q9H0U6 180 aaKnown RBP6.29□□□□□ -1.4
CHD4-208ENST00000540960 TRAV8-1A0A0A6YYK1 113 aa6.28□□□□□ -1.4
CHD4-208ENST00000540960 TRAV25A0A0B4J276 109 aa6.28□□□□□ -1.4
CHD4-208ENST00000540960 SNURFLB1AK76 121 aa6.28□□□□□ -1.4
CHD4-208ENST00000540960 ZNF207O43670 478 aaKnown RBP6.28□□□□□ -1.4
CHD4-208ENST00000540960 CRISP2P16562 243 aa6.28□□□□□ -1.4
CHD4-208ENST00000540960 AKR1D1P51857 326 aa6.28□□□□□ -1.4
CHD4-208ENST00000540960 Q0VG73 95 aa6.28□□□□□ -1.4
CHD4-208ENST00000540960 KLF5Q13887 457 aaPredicted RBP6.28□□□□□ -1.4
CHD4-208ENST00000540960 TM4SF20Q53R12 229 aa6.28□□□□□ -1.4
CHD4-208ENST00000540960 OR10J3Q5JRS4 329 aa6.28□□□□□ -1.4
CHD4-208ENST00000540960 EBLN2Q6P2I7 272 aa6.28□□□□□ -1.4
CHD4-208ENST00000540960 UNQ9165/PRO28630Q6UXU0 137 aa6.28□□□□□ -1.4
CHD4-208ENST00000540960 SMIM15Q7Z3B0 74 aa6.28□□□□□ -1.4
CHD4-208ENST00000540960 NUP35Q8NFH5 326 aa6.28□□□□□ -1.4
CHD4-208ENST00000540960 TMEM18Q96B42 140 aa6.28□□□□□ -1.4
CHD4-208ENST00000540960 ZC2HC1AQ96GY0 325 aa6.28□□□□□ -1.4
CHD4-208ENST00000540960 PACRGQ96M98 296 aaPredicted RBP6.28□□□□□ -1.4
CHD4-208ENST00000540960 TSSC4Q9Y5U2 329 aaPredicted RBP6.28□□□□□ -1.4
CHD4-208ENST00000540960 IGHV3OR16-8A0A075B7F1 116 aa6.27□□□□□ -1.41
CHD4-208ENST00000540960 IGKV2-40A0A087WW87 121 aaPredicted RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms